Ss1.1-LyN1-MLN01A100025.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTCCTCCAGGGCGGGCACCATGTTGCACTCATCTTTGCCCCCAGCATCTAGCAGTGTT GGCATGTAGTAGGCACTCAAGAAATGTGTGTTCAGTGAACGATGCCTGAGCCGTGGCAGC GGCTGAGGCAAGCTGGCTGACTGGGTACCGGCTGCCCTGACGCGAGAGGGGAGTTGCCTA CGGACCTCAGCCTGAGCCGCAGGCGCTGCCGCTGCGGGGTGGACAGCTATGGCCAAGGAT ATCCTGGGTGAAGCAGGGCTGCACTTTGATGAACTGAACAAGCTGCGGGTGTTGGACCCA GAGGTTACCCAGCAGACCATAGAGCTCAAAGAAGAGTGCAAGGACTTTGTCGACAAAATC GGCCAGTTTCAGAAAATAGTTGGTGGTTTAATTGAGCTTGTTGATCAACTTGCAAAAGAA GCAGAAAATGAGAAGATGAAGGCCATTGGTGCTCGGAACTTGCTCAAATCTATAGCAAAG CAGAGAGAAGCCCAACAGCAGCAACTCCAGGCACTAATAGCAGAAAAGAAAATGCAGCTT GAAAGGTATCGGGTTGAATATGAAGCTTTGTGTAAAGTAGAAGCAGAACAAAATGAATTT ATTGACCAATTTATTTTTCAGAAATGAACTAAAAATTTCATTTTCTAAGAGGACCAAAAA AAAAAAAAAAAAAAGGAAAAAAACTCCACAACCCAAACCAAAAAGACCTCTGTACCATTT GTACCATTCCAGTGACTTGACTAAAGACCCAAGTGTGTCATGGGAGATGGTGTGAGGAAT GCAGCATCTCTGAAGGCAGTAGCACAGATCTGGGGGAGCCTCTTCCAGATGTCAGTGTGT ATCTGCAGGTGAACACCCAGCAGCCATTGCGGTCCAGGTTCTCACCTCTTGCATTTTCAG TCTGAACTGAGCAGCCTGGCAGCCTGTAAATTTTGGGGGTTGTTTTTTTTGTAAATTTGC AAAGCTTTGGAAGGCAAAGCAATAAATTAATGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTCCTCCAGGGCGGGCACCATGTTGCACTCATCTTTGCCCCCAGCATCTAGCAGTGTT GGCATGTAGTAGGCACTCAAGAAATGTGTGTTCAGTGAACGATGCCTGAGCCGTGGCAGC GGCTGAGGCAAGCTGGCTGACTGGGTACCGGCTGCCCTGACGCGAGAGGGGAGTTGCCTA CGGACCTCAGCCTGAGCCGCAGGCGCTGCCGCTGCGGGGTGGACAGCTATGGCCAAGGAT ATCCTGGGTGAAGCAGGGCTGCACTTTGATGAACTGAACAAGCTGCGGGTGTTGGACCCA GAGGTTACCCAGCAGACCATAGAGCTCAAAGAAGAGTGCAAGGACTTTGTCGACAAAATC GGCCAGTTTCAGAAAATAGTTGGTGGTTTAATTGAGCTTGTTGATCAACTTGCAAAAGAA GCAGAAAATGAGAAGATGAAGGCCATTGGTGCTCGGAACTTGCTCAAATCTATAGCAAAG CAGAGAGAAGCCCAACAGCAGCAACTCCAGGCACTAATAGCAGAAAAGAAAATGCAGCTT GAAAGGTATCGGGTTGAATATGAAGCTTTGTGTAAAGTAGAAGCAGAACAAAATGAATTT ATTGACCAATTTATTTTTCAGAAATGAACTAAAAATTTCATTTTCTAAGAGGACCAAAAA AAAAAAAAAAAAAAGGAAAAAAACTCCACAACCCAAACCAAAAAGACCTCTGTACCATTT GTACCATTCCAGTGACTTGACTAAAGACCCAAGTGTGTCATGGGAGATGGTGTGAGGAAT GCAGCATCTCTGAAGGCAGTAGCACAGATCTGGGGGAGCCTCTTCCAGATGTCAGTGTGT ATCTGCAGGTGAACACCCAGCAGCCATTGCGGTCCAGGTTCTCACCTCTTGCATTTTCAG TCTGAACTGAGCAGCCTGGCAGCCTGTAAATTTTGGGGGTTGTTTTTTTTGTAAATTTGC AAAGCTTTGGAAGGCAAAGCAATAAATTAATGTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 223-341, + strand, RNAz p=0.908545 | |
| 879-996, - strand, RNAz p=0.570237 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 223-341, + strand, RNAz p=0.908545 | |
| 879-996, - strand, RNAz p=0.570237 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr19 (13361612-13361505) | |
| 1-108, gnl|canFam2|chr9 (45909733-45909640) | |
| 1-108, gnl|dasNov1|scaffold_18871 (9891-9986) | |
| 1-108, gnl|echTel1|scaffold_311300 (1721-1796) | |
| 1-108, gnl|hg17|chr14 (30557259-30557355) | |
| 1-108, gnl|Hg17|chr17 (23683525-23683417) | |
| 1-108, gnl|loxAfr1|scaffold_147613 (4872-4954) | |
| 1-108, gnl|Mm7|chr11 (78620093-78620200) | |
| 1-108, gnl|panTro1|chr19_random (12545105-12545010) | |
| 1-108, gnl|rheMac2|chr7 (93964652-93964748) | |
| 1-108, gnl|rn3|chr10 (64662601-64662695) | |
| 223-355, gnl|bosTau2|chr19 (13361237-13361105) | |
| 223-355, gnl|canFam2|chr9 (45909361-45909233) | |
| 223-355, gnl|canFam2|chr9 (45909212-45909375) | |
| 223-355, gnl|canFam2|chr9 (45909233-45909354) | |
| 223-355, gnl|danRer3|chr16 (16506911-16507037) | |
| 223-355, gnl|danRer3|chr16 (16507046-16506908) | |
| 223-355, gnl|dasNov1|scaffold_18871 (10268-10396) | |
| 223-355, gnl|dasNov1|scaffold_18871 (10417-10254) | |
| 223-355, gnl|dasNov1|scaffold_18871 (10396-10275) | |
| 223-355, gnl|echTel1|scaffold_224155 (19316-19443) | |
| 223-355, gnl|echTel1|scaffold_224155 (19443-19310) | |
| 223-355, gnl|echTel1|scaffold_224155 (19443-19325) | |
| 223-355, gnl|fr1|chrUn (284559040-284559167) | |
| 223-355, gnl|fr1|chrUn (260678090-260678232) | |
| 223-355, gnl|galGal2|chr19 (8840239-8840395) | |
| 223-355, gnl|hg17|chr14 (30557480-30557608) | |
| 223-355, gnl|hg17|chr15 (87382401-87382528) | |
| 223-355, gnl|hg17|chr17 (23682996-23683155) | |
| 223-355, gnl|Hg17|chr17 (23683144-23683012) | |
| 223-355, gnl|loxAfr1|scaffold_147613 (5251-5371) | |
| 223-355, gnl|loxAfr1|scaffold_147613 (5391-5228) | |
| 223-355, gnl|loxAfr1|scaffold_147613 (5371-5250) | |
| 223-355, gnl|mm7|chr11 (78620410-78620538) | |
| 223-355, gnl|mm7|chr11 (78620557-78620396) | |
| 223-355, gnl|Mm7|chr11 (78620405-78620537) | |
| 223-355, gnl|mm7|chr9 (12267229-12267089) | |
| 223-355, gnl|monDom2|scaffold_16 (42951885-42952013) | |
| 223-355, gnl|monDom2|scaffold_16 (42952013-42951894) | |
| 223-355, gnl|monDom2|scaffold_44 (14126708-14126859) | |
| 223-355, gnl|oryCun1|scaffold_105275 (8926-9055) | |
| 223-355, gnl|oryCun1|scaffold_105275 (9055-8923) | |
| 223-355, gnl|oryCun1|scaffold_105275 (9055-8929) | |
| 223-355, gnl|panTro1|chr16 (88241379-88241506) | |
| 223-355, gnl|panTro1|chr19_random (12544727-12544599) | |
| 223-355, gnl|panTro1|chr19_random (12544582-12544741) | |
| 223-355, gnl|rheMac2|chr16 (23513981-23514140) | |
| 223-355, gnl|rheMac2|chr7 (93964864-93964992) | |
| 223-355, gnl|rheMac2|chr7 (68670827-68670954) | |
| 223-355, gnl|rn3|chr1 (135068471-135068586) | |
| 223-355, gnl|rn3|chr10 (64662942-64663070) | |
| 223-355, gnl|rn3|chr10 (64663089-64662928) | |
| 223-355, gnl|tetNig1|chr10 (8743480-8743366) | |
| 223-355, gnl|tetNig1|chr16 (8307789-8307929) | |
| 223-355, gnl|xenTro1|scaffold_281 (1441207-1441061) | |
| 544-996, gnl|bosTau2|chr19 (13358374-13357956) | |
| 544-996, gnl|Hg17|chr17 (23679888-23679486) | |
| 544-996, gnl|Mm7|chr11 (78622934-78623289) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr19 (13361612-13361505) | |
| 1-108, gnl|canFam2|chr9 (45909733-45909640) | |
| 1-108, gnl|dasNov1|scaffold_18871 (9891-9986) | |
| 1-108, gnl|echTel1|scaffold_311300 (1721-1796) | |
| 1-108, gnl|hg17|chr14 (30557259-30557355) | |
| 1-108, gnl|Hg17|chr17 (23683525-23683417) | |
| 1-108, gnl|loxAfr1|scaffold_147613 (4872-4954) | |
| 1-108, gnl|Mm7|chr11 (78620093-78620200) | |
| 1-108, gnl|panTro1|chr19_random (12545105-12545010) | |
| 1-108, gnl|rheMac2|chr7 (93964652-93964748) | |
| 1-108, gnl|rn3|chr10 (64662601-64662695) | |
| 223-355, gnl|bosTau2|chr19 (13361237-13361105) | |
| 223-355, gnl|canFam2|chr9 (45909361-45909233) | |
| 223-355, gnl|canFam2|chr9 (45909212-45909375) | |
| 223-355, gnl|canFam2|chr9 (45909233-45909354) | |
| 223-355, gnl|danRer3|chr16 (16506911-16507037) | |
| 223-355, gnl|danRer3|chr16 (16507046-16506908) | |
| 223-355, gnl|dasNov1|scaffold_18871 (10268-10396) | |
| 223-355, gnl|dasNov1|scaffold_18871 (10417-10254) | |
| 223-355, gnl|dasNov1|scaffold_18871 (10396-10275) | |
| 223-355, gnl|echTel1|scaffold_224155 (19316-19443) | |
| 223-355, gnl|echTel1|scaffold_224155 (19443-19310) | |
| 223-355, gnl|echTel1|scaffold_224155 (19443-19325) | |
| 223-355, gnl|fr1|chrUn (284559040-284559167) | |
| 223-355, gnl|fr1|chrUn (260678090-260678232) | |
| 223-355, gnl|galGal2|chr19 (8840239-8840395) | |
| 223-355, gnl|hg17|chr14 (30557480-30557608) | |
| 223-355, gnl|hg17|chr15 (87382401-87382528) | |
| 223-355, gnl|hg17|chr17 (23682996-23683155) | |
| 223-355, gnl|Hg17|chr17 (23683144-23683012) | |
| 223-355, gnl|loxAfr1|scaffold_147613 (5251-5371) | |
| 223-355, gnl|loxAfr1|scaffold_147613 (5391-5228) | |
| 223-355, gnl|loxAfr1|scaffold_147613 (5371-5250) | |
| 223-355, gnl|mm7|chr11 (78620410-78620538) | |
| 223-355, gnl|mm7|chr11 (78620557-78620396) | |
| 223-355, gnl|Mm7|chr11 (78620405-78620537) | |
| 223-355, gnl|mm7|chr9 (12267229-12267089) | |
| 223-355, gnl|monDom2|scaffold_16 (42951885-42952013) | |
| 223-355, gnl|monDom2|scaffold_16 (42952013-42951894) | |
| 223-355, gnl|monDom2|scaffold_44 (14126708-14126859) | |
| 223-355, gnl|oryCun1|scaffold_105275 (8926-9055) | |
| 223-355, gnl|oryCun1|scaffold_105275 (9055-8923) | |
| 223-355, gnl|oryCun1|scaffold_105275 (9055-8929) | |
| 223-355, gnl|panTro1|chr16 (88241379-88241506) | |
| 223-355, gnl|panTro1|chr19_random (12544727-12544599) | |
| 223-355, gnl|panTro1|chr19_random (12544582-12544741) | |
| 223-355, gnl|rheMac2|chr16 (23513981-23514140) | |
| 223-355, gnl|rheMac2|chr7 (93964864-93964992) | |
| 223-355, gnl|rheMac2|chr7 (68670827-68670954) | |
| 223-355, gnl|rn3|chr1 (135068471-135068586) | |
| 223-355, gnl|rn3|chr10 (64662942-64663070) | |
| 223-355, gnl|rn3|chr10 (64663089-64662928) | |
| 223-355, gnl|tetNig1|chr10 (8743480-8743366) | |
| 223-355, gnl|tetNig1|chr16 (8307789-8307929) | |
| 223-355, gnl|xenTro1|scaffold_281 (1441207-1441061) | |
| 544-996, gnl|bosTau2|chr19 (13358374-13357956) | |
| 544-996, gnl|Hg17|chr17 (23679888-23679486) | |
| 544-996, gnl|Mm7|chr11 (78622934-78623289) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cst (0.420109) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| fli (0.202881) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cki (0.165235) | |
| cje (0.165235) | |
| fco (0.157208) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| bla (0.124347) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.420109) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| fli (0.202881) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cki (0.165235) | |
| cje (0.165235) | |
| fco (0.157208) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| bla (0.124347) |