Ss1.1-LyN1-MLN01A100041.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGCCTTCTGGGAATCTCGAGGTTCAGTGGCTGGGTAAAATGGCGGAAGCTGCGGAGCT GGTGTGGCTTCGTGGCCCTGCCTTCGGGTGCAAGGCGTTGCGCGTTACCTCGACCCTGTG CTCCGTACGGGATTTTATCCACCGGCACTGCCAAGATCAGGTTGTTCCATTGGAATACTT CTTTGTGAAATGCAACGGATTACTCGTTAATGCCAGTGACACAGTGCAGCATGGAGCTGT TTATAGTTTGGAGCCCAGACTTCGTGGTGGAAAAGGAGGTTTTGGCTCTATGCTCCGAGC ACTTGGTGCTCAGATTGAGAAGACAACCAACCGAGAAGCTTGCCGGGATCTCAGTGGAAG GAGACTCCGAGATGTCAATCATGAAAAAGCGATGGCTGAATGGGTAAAACAACAAGCTGA GCGAGAAGCTGAAAAAGAGCAGAAGCGCCTGGAACGGCTGCAGCGGAAGCTCGCAGAGCC CAGGCACTGCTTCACCAGCCCCGACTACCAGCAGCAGTGCCATGAGATGGCCGAGCGCCT GGAGGATTCTGTCCTCAAAGGTATGCAGGCTGCCTCCAGTAAGGTGGTATCAGCAGAAAT TGGTGAGCATCGGAAACGGCCTTACAAATCCAAAACAGACAGGGGAGCCAGTGCAGGGAA AAGGAAATGCTTTTGGTTGGGCATGGACGGACTGGAGACTGCAGAGGGGTCGAGCTCTGA GAGCTCCGATGAGGACAGTGAAGAAGCACCTGGTTCTTCAGGAGTGAGCTTTCCTGTTCC CCCACATGGCAGTGATGGTGTTGCAATGGCAGCCAAACTTCCTAGTAGTTCTCAGCAGGC CAGAGTATTAGTGAGTACAGACCCCAGGTCATCAGAAAAACTGCCGACCCCCGTGACTGA CTCCGGGGAGGGGATTTCAGAAGACTTGTGTGCTGAGCTGGGAGAGGCCTCCACTGAGGA GGAGCACGTGGAAAGGAAGACGGCTGCAGAAATAGAGAACACCCAGGAGCAAAAGGAGAC AGAGACTGAAGAACCCAGAGAAAAGGAAGCAGCTGGAGTTGGAGTGAATAAGGAGCAAGA GACACAAGGAATGGCTGATGGGGAAGGAGCTGCTGTGGGAGCATCTGGAGGAGATGGGGG AGATGTACCTGTTGCCAGACGGGAGGAAAGCCAGGCAGAAAGCACAGATTTTGGTCAGGA AACTATAGATTTGCTGGCATTCAACTCAGTTGCAGATTTGGAGTTGCTGGGTTTGGAGAA GCTCAAGTGTGAACTCATGGCCTTGGGGCTGAAGTGTGGGGGGACACTCCACGAGCGGGC GGCAAGGCTCTTCTCCGTCAGAGGTCTGGCCAGGGAGCAAATAGACCCAGCTTTATTTGC CAAGCCTTCGAAAGGGAAGAAGAAGTGAATTTCATCAGCACTGTTTCCTGTTTATTTCTG GTCTGGCACTTGTACCCTGCATAATGTTTACTCTTGGACATTATTCCTGTTGCCATTAAA GGTGACTTTTTAATAACCCAGTTCTAACTACCCTCTTTTTCATTATTAGATATGTAGAAC TAATATGTGAAACCATCTGGGCCTGAAGTTTTCTTTGTGGGAAGATTTCTTATAACTAGT TTCTTTAATAAATGTAAGGCTATTCAGAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGCCTTCTGGGAATCTCGAGGTTCAGTGGCTGGGTAAAATGGCGGAAGCTGCGGAGCT GGTGTGGCTTCGTGGCCCTGCCTTCGGGTGCAAGGCGTTGCGCGTTACCTCGACCCTGTG CTCCGTACGGGATTTTATCCACCGGCACTGCCAAGATCAGGTTGTTCCATTGGAATACTT CTTTGTGAAATGCAACGGATTACTCGTTAATGCCAGTGACACAGTGCAGCATGGAGCTGT TTATAGTTTGGAGCCCAGACTTCGTGGTGGAAAAGGAGGTTTTGGCTCTATGCTCCGAGC ACTTGGTGCTCAGATTGAGAAGACAACCAACCGAGAAGCTTGCCGGGATCTCAGTGGAAG GAGACTCCGAGATGTCAATCATGAAAAAGCGATGGCTGAATGGGTAAAACAACAAGCTGA GCGAGAAGCTGAAAAAGAGCAGAAGCGCCTGGAACGGCTGCAGCGGAAGCTCGCAGAGCC CAGGCACTGCTTCACCAGCCCCGACTACCAGCAGCAGTGCCATGAGATGGCCGAGCGCCT GGAGGATTCTGTCCTCAAAGGTATGCAGGCTGCCTCCAGTAAGGTGGTATCAGCAGAAAT TGGTGAGCATCGGAAACGGCCTTACAAATCCAAAACAGACAGGGGAGCCAGTGCAGGGAA AAGGAAATGCTTTTGGTTGGGCATGGACGGACTGGAGACTGCAGAGGGGTCGAGCTCTGA GAGCTCCGATGAGGACAGTGAAGAAGCACCTGGTTCTTCAGGAGTGAGCTTTCCTGTTCC CCCACATGGCAGTGATGGTGTTGCAATGGCAGCCAAACTTCCTAGTAGTTCTCAGCAGGC CAGAGTATTAGTGAGTACAGACCCCAGGTCATCAGAAAAACTGCCGACCCCCGTGACTGA CTCCGGGGAGGGGATTTCAGAAGACTTGTGTGCTGAGCTGGGAGAGGCCTCCACTGAGGA GGAGCACGTGGAAAGGAAGACGGCTGCAGAAATAGAGAACACCCAGGAGCAAAAGGAGAC AGAGACTGAAGAACCCAGAGAAAAGGAAGCAGCTGGAGTTGGAGTGAATAAGGAGCAAGA GACACAAGGAATGGCTGATGGGGAAGGAGCTGCTGTGGGAGCATCTGGAGGAGATGGGGG AGATGTACCTGTTGCCAGACGGGAGGAAAGCCAGGCAGAAAGCACAGATTTTGGTCAGGA AACTATAGATTTGCTGGCATTCAACTCAGTTGCAGATTTGGAGTTGCTGGGTTTGGAGAA GCTCAAGTGTGAACTCATGGCCTTGGGGCTGAAGTGTGGGGGGACACTCCACGAGCGGGC GGCAAGGCTCTTCTCCGTCAGAGGTCTGGCCAGGGAGCAAATAGACCCAGCTTTATTTGC CAAGCCTTCGAAAGGGAAGAAGAAGTGAATTTCATCAGCACTGTTTCCTGTTTATTTCTG GTCTGGCACTTGTACCCTGCATAATGTTTACTCTTGGACATTATTCCTGTTGCCATTAAA GGTGACTTTTTAATAACCCAGTTCTAACTACCCTCTTTTTCATTATTAGATATGTAGAAC TAATATGTGAAACCATCTGGGCCTGAAGTTTTCTTTGTGGGAAGATTTCTTATAACTAGT TTCTTTAATAAATGTAAGGCTATTCAGAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 392-550, + strand, RNAz p=0.937043 | |
| 1068-1185, - strand, RNAz p=0.668393 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 392-550, + strand, RNAz p=0.937043 | |
| 1068-1185, - strand, RNAz p=0.668393 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 158-280, gnl|bosTau2|chr16 (17378301-17378179) | |
| 158-280, gnl|canFam2|chr7 (41834740-41834596) | |
| 158-280, gnl|danRer3|chr22 (29060422-29060268) | |
| 158-280, gnl|dasNov1|scaffold_50912 (6491-6636) | |
| 158-280, gnl|echTel1|scaffold_282279 (12645-12788) | |
| 158-280, gnl|galGal2|chr3 (13505890-13505753) | |
| 158-280, gnl|hg17|chr1 (222489693-222489837) | |
| 158-280, gnl|Hg17|chr1 (222489822-222489700) | |
| 158-280, gnl|loxAfr1|scaffold_68768 (4749-4606) | |
| 158-280, gnl|mm7|chr1 (180835580-180835436) | |
| 158-280, gnl|Mm7|chr1 (180835449-180835571) | |
| 158-280, gnl|monDom2|scaffold_13 (33917213-33917357) | |
| 158-280, gnl|oryCun1|scaffold_79877 (739-888) | |
| 158-280, gnl|panTro1|chr1 (206307486-206307630) | |
| 158-280, gnl|rn3|chr13 (96778919-96778775) | |
| 392-569, gnl|bosTau2|chr16 (17376261-17376084) | |
| 392-569, gnl|Hg17|chr1 (222487002-222486825) | |
| 392-569, gnl|Mm7|chr1 (180839551-180839728) | |
| 675-1185, gnl|bosTau2|chr16 (17372257-17371753) | |
| 675-1185, gnl|Hg17|chr1 (222482825-222482333) | |
| 675-1185, gnl|Mm7|chr1 (180842006-180842489) | |
| 1187-1648, gnl|bosTau2|chr16 (17368692-17368233) | |
| 1187-1648, gnl|Hg17|chr1 (222479959-222479502) | |
| 1187-1648, gnl|Mm7|chr1 (180845721-180846099) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-280, gnl|bosTau2|chr16 (17378301-17378179) | |
| 158-280, gnl|canFam2|chr7 (41834740-41834596) | |
| 158-280, gnl|danRer3|chr22 (29060422-29060268) | |
| 158-280, gnl|dasNov1|scaffold_50912 (6491-6636) | |
| 158-280, gnl|echTel1|scaffold_282279 (12645-12788) | |
| 158-280, gnl|galGal2|chr3 (13505890-13505753) | |
| 158-280, gnl|hg17|chr1 (222489693-222489837) | |
| 158-280, gnl|Hg17|chr1 (222489822-222489700) | |
| 158-280, gnl|loxAfr1|scaffold_68768 (4749-4606) | |
| 158-280, gnl|mm7|chr1 (180835580-180835436) | |
| 158-280, gnl|Mm7|chr1 (180835449-180835571) | |
| 158-280, gnl|monDom2|scaffold_13 (33917213-33917357) | |
| 158-280, gnl|oryCun1|scaffold_79877 (739-888) | |
| 158-280, gnl|panTro1|chr1 (206307486-206307630) | |
| 158-280, gnl|rn3|chr13 (96778919-96778775) | |
| 392-569, gnl|bosTau2|chr16 (17376261-17376084) | |
| 392-569, gnl|Hg17|chr1 (222487002-222486825) | |
| 392-569, gnl|Mm7|chr1 (180839551-180839728) | |
| 675-1185, gnl|bosTau2|chr16 (17372257-17371753) | |
| 675-1185, gnl|Hg17|chr1 (222482825-222482333) | |
| 675-1185, gnl|Mm7|chr1 (180842006-180842489) | |
| 1187-1648, gnl|bosTau2|chr16 (17368692-17368233) | |
| 1187-1648, gnl|Hg17|chr1 (222479959-222479502) | |
| 1187-1648, gnl|Mm7|chr1 (180845721-180846099) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tes (0.207814) | |
| duo (0.172801) | |
| fat (0.147427) | |
| ova (0.129132) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| duo (0.172801) | |
| fat (0.147427) | |
| ova (0.129132) |