Non-Coding RNA Search

Ss1.1-LyN1-MLN01A110063.5

Sequence:


               
               CAGAGGCGTTGCATATCAGTGATGATTCTGATCCTTTCAATGTACGTTCTTCTGCGTCAA
AATTCAGTGACAGTTTGAAAGAAGGATGCCAGGAAGGACTTAAAATTTGTCAGTGACATT
GAGAAGGAAATGGAAGCCCTTTGGAGGCCGTGAATAAGGGGAAGAACAATAAGAAAAGCC
ACTGCTTCCCTCCCATGAACCGAGACCACCGCCGGATCATCCATGACCTGGCCCAAGTGT
ACGGCCTGGAGAGCGTGAGCTATGACAGTGAACCAAAGCGTAACGTCGTGGTCACTGCAG
TCAGAGGGAAGTCTATTTGTCCTCCTAACACGCTGACGAGTGTACTTGAAAGGGAAATGC
AGTCACGGCCTCCACCACCGATTCCTCATCATAGACATCAGACAGACAAGAATCCTGGGA
GCAGTAATTTACAGAAGATAGCCAAGGAGCCAATAATTGACTACTTTGATGTCCAGGACT
GAGAGGATCAAGATGCACTTAGCAAAAAGAATGATTAGGTGTGGTGGAGACCCGTTTGCT
AGCAGATACATCGCTCTTGTTCCCAGCTGTCTGGTGGACTCACAGCTCACACACTGTCTT
GTTCTGATACATCCAAAGCATGAGTATATCAGAAACCCCCCTGTCTTCCCTGCCATCTTT
ATAAAGTGTCTCAGAATGGCCAGATCTCCGATGGTCACTAGTGATGCGGTTGTATTTGCA
GAGGCTCCTCACACCACCACCATGGTTGCTCTGAGGGTTGGGGGAGCATTGACTTTGATT
TAGAAAAGCCAGAATTCTAGCTTGAAAACATCACTTTGTTGTGGTCTCGGTTGTCCCAGT
TATCCATCCTCCTCCTGAAAATGCTTCCACTTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGCGTTGCATATCAGTGATGATTCTGATCCTTTCAATGTACGTTCTTCTGCGTCAA
AATTCAGTGACAGTTTGAAAGAAGGATGCCAGGAAGGACTTAAAATTTGTCAGTGACATT
GAGAAGGAAATGGAAGCCCTTTGGAGGCCGTGAATAAGGGGAAGAACAATAAGAAAAGCC
ACTGCTTCCCTCCCATGAACCGAGACCACCGCCGGATCATCCATGACCTGGCCCAAGTGT
ACGGCCTGGAGAGCGTGAGCTATGACAGTGAACCAAAGCGTAACGTCGTGGTCACTGCAG
TCAGAGGGAAGTCTATTTGTCCTCCTAACACGCTGACGAGTGTACTTGAAAGGGAAATGC
AGTCACGGCCTCCACCACCGATTCCTCATCATAGACATCAGACAGACAAGAATCCTGGGA
GCAGTAATTTACAGAAGATAGCCAAGGAGCCAATAATTGACTACTTTGATGTCCAGGACT
GAGAGGATCAAGATGCACTTAGCAAAAAGAATGATTAGGTGTGGTGGAGACCCGTTTGCT
AGCAGATACATCGCTCTTGTTCCCAGCTGTCTGGTGGACTCACAGCTCACACACTGTCTT
GTTCTGATACATCCAAAGCATGAGTATATCAGAAACCCCCCTGTCTTCCCTGCCATCTTT
ATAAAGTGTCTCAGAATGGCCAGATCTCCGATGGTCACTAGTGATGCGGTTGTATTTGCA
GAGGCTCCTCACACCACCACCATGGTTGCTCTGAGGGTTGGGGGAGCATTGACTTTGATT
TAGAAAAGCCAGAATTCTAGCTTGAAAACATCACTTTGTTGTGGTCTCGGTTGTCCCAGT
TATCCATCCTCCTCCTGAAAATGCTTCCACTTTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9D9E1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D9E1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               185-304, - strand, RNAz p=0.512879

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-304, - strand, RNAz p=0.512879

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               157-304, gnl|bosTau2|chr8 (40454029-40454176)
               

               
               157-304, gnl|canFam2|chr11 (53490214-53490372)
               

               
               157-304, gnl|danRer3|chr7 (29479527-29479677)
               

               
               157-304, gnl|dasNov1|scaffold_13745 (49096-48938)
               

               
               157-304, gnl|echTel1|scaffold_296387 (5021-4863)
               

               
               157-304, gnl|fr1|chrUn (3387239-3387394)
               

               
               157-304, gnl|galGal2|chr2 (55263800-55263958)
               

               
               157-304, gnl|hg17|chr9 (33356623-33356781)
               

               
               157-304, gnl|Hg17|chr9 (33356625-33356772)
               

               
               157-304, gnl|mm7|chr4 (41162073-41162231)
               

               
               157-304, gnl|Mm7|chr4 (41162075-41162222)
               

               
               157-304, gnl|monDom2|scaffold_83 (5258093-5257935)
               

               
               157-304, gnl|oryCun1|scaffold_184461 (8143-7985)
               

               
               157-304, gnl|panTro1|chr11 (33856017-33856175)
               

               
               157-304, gnl|rheMac2|chr15 (43858628-43858470)
               

               
               157-304, gnl|rn3|chr5 (58420217-58420375)
               

               
               157-304, gnl|tetNig1|chr6 (4838420-4838577)
               

               
               157-304, gnl|xenTro1|scaffold_89 (1723602-1723759)
               


               
               407-876, gnl|bosTau2|chr8 (40455987-40456474)
               

               
               407-876, gnl|Hg17|chr9 (33359901-33360399)
               

               
               407-876, gnl|Mm7|chr4 (41163261-41163710)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-304, gnl|bosTau2|chr8 (40454029-40454176)
               

               
               157-304, gnl|canFam2|chr11 (53490214-53490372)
               

               
               157-304, gnl|danRer3|chr7 (29479527-29479677)
               

               
               157-304, gnl|dasNov1|scaffold_13745 (49096-48938)
               

               
               157-304, gnl|echTel1|scaffold_296387 (5021-4863)
               

               
               157-304, gnl|fr1|chrUn (3387239-3387394)
               

               
               157-304, gnl|galGal2|chr2 (55263800-55263958)
               

               
               157-304, gnl|hg17|chr9 (33356623-33356781)
               

               
               157-304, gnl|Hg17|chr9 (33356625-33356772)
               

               
               157-304, gnl|mm7|chr4 (41162073-41162231)
               

               
               157-304, gnl|Mm7|chr4 (41162075-41162222)
               

               
               157-304, gnl|monDom2|scaffold_83 (5258093-5257935)
               

               
               157-304, gnl|oryCun1|scaffold_184461 (8143-7985)
               

               
               157-304, gnl|panTro1|chr11 (33856017-33856175)
               

               
               157-304, gnl|rheMac2|chr15 (43858628-43858470)
               

               
               157-304, gnl|rn3|chr5 (58420217-58420375)
               

               
               157-304, gnl|tetNig1|chr6 (4838420-4838577)
               

               
               157-304, gnl|xenTro1|scaffold_89 (1723602-1723759)
               


               
               407-876, gnl|bosTau2|chr8 (40455987-40456474)
               

               
               407-876, gnl|Hg17|chr9 (33359901-33360399)
               

               
               407-876, gnl|Mm7|chr4 (41163261-41163710)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               ova (0.129132)

	157-304, gnl\|bosTau2\|chr8 (40454029-40454176)
	157-304, gnl\|canFam2\|chr11 (53490214-53490372)
	157-304, gnl\|danRer3\|chr7 (29479527-29479677)
	157-304, gnl\|dasNov1\|scaffold_13745 (49096-48938)
	157-304, gnl\|echTel1\|scaffold_296387 (5021-4863)
	157-304, gnl\|fr1\|chrUn (3387239-3387394)
	157-304, gnl\|galGal2\|chr2 (55263800-55263958)
	157-304, gnl\|hg17\|chr9 (33356623-33356781)
	157-304, gnl\|Hg17\|chr9 (33356625-33356772)
	157-304, gnl\|mm7\|chr4 (41162073-41162231)
	157-304, gnl\|Mm7\|chr4 (41162075-41162222)
	157-304, gnl\|monDom2\|scaffold_83 (5258093-5257935)
	157-304, gnl\|oryCun1\|scaffold_184461 (8143-7985)
	157-304, gnl\|panTro1\|chr11 (33856017-33856175)
	157-304, gnl\|rheMac2\|chr15 (43858628-43858470)
	157-304, gnl\|rn3\|chr5 (58420217-58420375)
	157-304, gnl\|tetNig1\|chr6 (4838420-4838577)
	157-304, gnl\|xenTro1\|scaffold_89 (1723602-1723759)

	407-876, gnl\|bosTau2\|chr8 (40455987-40456474)
	407-876, gnl\|Hg17\|chr9 (33359901-33360399)
	407-876, gnl\|Mm7\|chr4 (41163261-41163710)