Non-Coding RNA Search

Ss1.1-LyN1-MLN01A110078.5

Sequence:


               
               TTTTATAGTATTAGATGCAGTGTATTTCAAGTTGAGAATCACTACCGCCTTGTGCTGGTG
CCAGCAGGAAGAATGATTACTCTCTTGAGTTGAGTTCTCATTTTATTTGACTTCCAATTG
ATTTCAGAGGATTTGAACTGTAATCCTTGGAAAGCTTAAGTTCTCATTCACCCTGTTTTT
CCCCCCAGGGTGTTCTTAAGGATATTTAGGGACTAGTTTAAACCCTAAACATAACCTTAC
TTATTCAGTGTGAATGTGTTGTCTGTTGCATAATTCTTGTGTAAGTGTTTCTACCTTTGA
TACTTATTTCCTTGAGGCTACAATGTAGCATCTTCTCCAGAGTTCAGAACTCTGACAACC
ATGTGGAAACCAGCTGCTGGGTGTTATGCTCTGAATCCCTTTTTGTCTATTCCTGGCAGA
GTGAATTCCTGAGCCTTGGTATGTTCTCTCTGTTGCTTAAAGCTAACAGGACAGGGAGAT
GCACAAGCATAATCACCAACATGAAAAATAAAAGTGACCCAACTCGTCCACCGATACGGC
AGCTCATGGATGGTGACAAAGAAGCTATTTGAGCCAGAAATTTTCAGCGCTTTTGAACAC
CTTCTGGCTTAGTTCAGTTAAATGGAAGAAAGTTGCTTTCCCAAAAGCAGAGTTTTTTAT
TGCTTGGGAGATTGTCGGTGTATGTGAGAGGCCACCAAACCAGGGTTGGAAGCCCCAGCG
GTTATATCAGGACTTTTCTGGAGTGAGTGGCTTTGGTCCAACAGTTCTTACCAGAGGAGG
ATCATGTAGAATGTGATAAAGTAGCTAAATGTTCCTAATAGGGAGAGATTTTTGTGTGTG
CACCATTACATGTTCATTACAGCCTGTAGGTTTTAAAGATGATGCTGAAGTCTAGGTATT
AAGGGAGTCCCACACTGGTGTTGGCTCCTGAGAGGACCCACACAGCATGCCGTTTACACA
AGACTGTTTGAAGCTGTCTGCACCTCCAGAGAGGCCAGATCAGCCCCCTGACCAGTGTTC
AGGCTCAGCCTTCATTTCAAGAGGAAACCAAGAGATTGCGGAGAATGGTTTCAGTTCAGG
CAGACCGAGCAGGTGTCCCTTTACTCTTCTCTCTTCCCTCCCTCCCACCCCACACGGAGG
CTCCTGCTCTGGTGGGTTTATGTTATAAAGTGAAGAAAAGTCATACAGAGATCCTGTTCC
CACTGCCACCACCGTGGCCCCTGCCCATCACTAGTCCACAGTTTGCCTGCTGGTAGTTTG
TGTTCCGTGGCTCCTGAGCTCTCCAGCCAGCTCCTGACAATCACTCGGCACAGCCCTCTG
GGTGGGGGAGCCGGCACCGCTGCTGTTTCTGTGGCTGTTTTCCAATAAGTAGACAATTAT
TGAGTTCTAGGTAAAAAACAGCGATTATTCTTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTATAGTATTAGATGCAGTGTATTTCAAGTTGAGAATCACTACCGCCTTGTGCTGGTG
CCAGCAGGAAGAATGATTACTCTCTTGAGTTGAGTTCTCATTTTATTTGACTTCCAATTG
ATTTCAGAGGATTTGAACTGTAATCCTTGGAAAGCTTAAGTTCTCATTCACCCTGTTTTT
CCCCCCAGGGTGTTCTTAAGGATATTTAGGGACTAGTTTAAACCCTAAACATAACCTTAC
TTATTCAGTGTGAATGTGTTGTCTGTTGCATAATTCTTGTGTAAGTGTTTCTACCTTTGA
TACTTATTTCCTTGAGGCTACAATGTAGCATCTTCTCCAGAGTTCAGAACTCTGACAACC
ATGTGGAAACCAGCTGCTGGGTGTTATGCTCTGAATCCCTTTTTGTCTATTCCTGGCAGA
GTGAATTCCTGAGCCTTGGTATGTTCTCTCTGTTGCTTAAAGCTAACAGGACAGGGAGAT
GCACAAGCATAATCACCAACATGAAAAATAAAAGTGACCCAACTCGTCCACCGATACGGC
AGCTCATGGATGGTGACAAAGAAGCTATTTGAGCCAGAAATTTTCAGCGCTTTTGAACAC
CTTCTGGCTTAGTTCAGTTAAATGGAAGAAAGTTGCTTTCCCAAAAGCAGAGTTTTTTAT
TGCTTGGGAGATTGTCGGTGTATGTGAGAGGCCACCAAACCAGGGTTGGAAGCCCCAGCG
GTTATATCAGGACTTTTCTGGAGTGAGTGGCTTTGGTCCAACAGTTCTTACCAGAGGAGG
ATCATGTAGAATGTGATAAAGTAGCTAAATGTTCCTAATAGGGAGAGATTTTTGTGTGTG
CACCATTACATGTTCATTACAGCCTGTAGGTTTTAAAGATGATGCTGAAGTCTAGGTATT
AAGGGAGTCCCACACTGGTGTTGGCTCCTGAGAGGACCCACACAGCATGCCGTTTACACA
AGACTGTTTGAAGCTGTCTGCACCTCCAGAGAGGCCAGATCAGCCCCCTGACCAGTGTTC
AGGCTCAGCCTTCATTTCAAGAGGAAACCAAGAGATTGCGGAGAATGGTTTCAGTTCAGG
CAGACCGAGCAGGTGTCCCTTTACTCTTCTCTCTTCCCTCCCTCCCACCCCACACGGAGG
CTCCTGCTCTGGTGGGTTTATGTTATAAAGTGAAGAAAAGTCATACAGAGATCCTGTTCC
CACTGCCACCACCGTGGCCCCTGCCCATCACTAGTCCACAGTTTGCCTGCTGGTAGTTTG
TGTTCCGTGGCTCCTGAGCTCTCCAGCCAGCTCCTGACAATCACTCGGCACAGCCCTCTG
GGTGGGGGAGCCGGCACCGCTGCTGTTTCTGTGGCTGTTTTCCAATAAGTAGACAATTAT
TGAGTTCTAGGTAAAAAACAGCGATTATTCTTACTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               100-211, - strand, RNAz p=0.932248
               

               
               132-251, - strand, RNAz p=0.999602

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-211, - strand, RNAz p=0.932248
               

               
               132-251, - strand, RNAz p=0.999602

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               100-600, gnl|bosTau2|chr15 (41230723-41231224)
               

               
               100-600, gnl|canFam2|chr18 (34707902-34707582)
               

               
               100-600, gnl|dasNov1|scaffold_630 (33870-33556)
               

               
               100-600, gnl|echTel1|scaffold_303674 (177400-177122)
               

               
               100-600, gnl|hg17|chr11 (36466979-36467304)
               

               
               100-600, gnl|Hg17|chr11 (36467848-36466989)
               

               
               100-600, gnl|mm7|chr2 (101549129-101548834)
               

               
               100-600, gnl|Mm7|chr2 (101548334-101549114)
               

               
               100-600, gnl|monDom2|scaffold_33 (1613152-1613556)
               

               
               100-600, gnl|oryCun1|scaffold_172510 (1893-1627)
               

               
               100-600, gnl|panTro1|chr9_random (15786044-15786365)
               

               
               100-600, gnl|rheMac2|chr14 (35337047-35336727)
               

               
               100-600, gnl|rn3|chr3 (86743799-86743506)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-600, gnl|bosTau2|chr15 (41230723-41231224)
               

               
               100-600, gnl|canFam2|chr18 (34707902-34707582)
               

               
               100-600, gnl|dasNov1|scaffold_630 (33870-33556)
               

               
               100-600, gnl|echTel1|scaffold_303674 (177400-177122)
               

               
               100-600, gnl|hg17|chr11 (36466979-36467304)
               

               
               100-600, gnl|Hg17|chr11 (36467848-36466989)
               

               
               100-600, gnl|mm7|chr2 (101549129-101548834)
               

               
               100-600, gnl|Mm7|chr2 (101548334-101549114)
               

               
               100-600, gnl|monDom2|scaffold_33 (1613152-1613556)
               

               
               100-600, gnl|oryCun1|scaffold_172510 (1893-1627)
               

               
               100-600, gnl|panTro1|chr9_random (15786044-15786365)
               

               
               100-600, gnl|rheMac2|chr14 (35337047-35336727)
               

               
               100-600, gnl|rn3|chr3 (86743799-86743506)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	100-211, - strand, RNAz p=0.932248
	132-251, - strand, RNAz p=0.999602

	100-600, gnl\|bosTau2\|chr15 (41230723-41231224)
	100-600, gnl\|canFam2\|chr18 (34707902-34707582)
	100-600, gnl\|dasNov1\|scaffold_630 (33870-33556)
	100-600, gnl\|echTel1\|scaffold_303674 (177400-177122)
	100-600, gnl\|hg17\|chr11 (36466979-36467304)
	100-600, gnl\|Hg17\|chr11 (36467848-36466989)
	100-600, gnl\|mm7\|chr2 (101549129-101548834)
	100-600, gnl\|Mm7\|chr2 (101548334-101549114)
	100-600, gnl\|monDom2\|scaffold_33 (1613152-1613556)
	100-600, gnl\|oryCun1\|scaffold_172510 (1893-1627)
	100-600, gnl\|panTro1\|chr9_random (15786044-15786365)
	100-600, gnl\|rheMac2\|chr14 (35337047-35336727)
	100-600, gnl\|rn3\|chr3 (86743799-86743506)