Ss1.1-LyN1-MLN01A110102.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGGCTTTCGCGTCCCCTCGGTCCTACCCCGCCCGCTCTGCTTGTAGCCGGAGCGCACG GTCCGCTCTCCTCCGTCACCCTGAGCTTTCCGCGGCGCTTCCCGCCGCCCCTGCGCAACC CCGCCCCGCCTCGCGCGCGGCCTTGTGCTCCGGTTCCCGCCCGGCCTCCGGACCGCGGTA CCCGGCCCTCGCCTTCCCGGTCAGGCGGGCATCCCGCGGTGCAAGCACAATGCTCTTCTA TTCCTTTTTCAAGTCCCTTGTGGGCAAGGATGTGGTCGTGGAACTCAAGAATGACCTGAG CATCTGTGGAACCCTCCATTCTGTGGATCAGTATCTCAACATCAAACTAACTGACATCAG TGTCACAGACCCTGAGAAATACCCTCACATGTTATCAGTGAAGAACTGCTTCATCCGAGG CTCAGTGGTTCGCTATGTGCAGTTGCCAGCAGATGAGGTTGACACACAGTTGCTACAGGA CGCAGCAAGGAAGGAGGCCCTGCAACAGAAGCAGTGATGGCTGCTCCTCCCTTTCCCTCC TTCCATCGGTGATTCTGAGCCTCATGTCCCAGCTCAGGATGCCTCCCTCCCATACTTGAG GTGTTGTTTTTTTCACAGCAAAGTTTTTGTGTTTTTTTTAAGGGATGAGTGGATGAGAGT AATAATAATGGAGAGCTACTCTCCTGTATTGAGAAGGGGAGGAAAAGGAAGCCCGGGAAC TGCGAAGCCTTCCCTATCCCCAGCACCTGCCTTTCTCACTTCTTCCCTGGAGGTGGGAGA ATCTCCCAGGTCTTTCTAGGGTAGCATGTGATTCATTCTGGGGATGGAAGGAATCTGTCC CGCATCGGGAATAAAATTTATGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGGCTTTCGCGTCCCCTCGGTCCTACCCCGCCCGCTCTGCTTGTAGCCGGAGCGCACG GTCCGCTCTCCTCCGTCACCCTGAGCTTTCCGCGGCGCTTCCCGCCGCCCCTGCGCAACC CCGCCCCGCCTCGCGCGCGGCCTTGTGCTCCGGTTCCCGCCCGGCCTCCGGACCGCGGTA CCCGGCCCTCGCCTTCCCGGTCAGGCGGGCATCCCGCGGTGCAAGCACAATGCTCTTCTA TTCCTTTTTCAAGTCCCTTGTGGGCAAGGATGTGGTCGTGGAACTCAAGAATGACCTGAG CATCTGTGGAACCCTCCATTCTGTGGATCAGTATCTCAACATCAAACTAACTGACATCAG TGTCACAGACCCTGAGAAATACCCTCACATGTTATCAGTGAAGAACTGCTTCATCCGAGG CTCAGTGGTTCGCTATGTGCAGTTGCCAGCAGATGAGGTTGACACACAGTTGCTACAGGA CGCAGCAAGGAAGGAGGCCCTGCAACAGAAGCAGTGATGGCTGCTCCTCCCTTTCCCTCC TTCCATCGGTGATTCTGAGCCTCATGTCCCAGCTCAGGATGCCTCCCTCCCATACTTGAG GTGTTGTTTTTTTCACAGCAAAGTTTTTGTGTTTTTTTTAAGGGATGAGTGGATGAGAGT AATAATAATGGAGAGCTACTCTCCTGTATTGAGAAGGGGAGGAAAAGGAAGCCCGGGAAC TGCGAAGCCTTCCCTATCCCCAGCACCTGCCTTTCTCACTTCTTCCCTGGAGGTGGGAGA ATCTCCCAGGTCTTTCTAGGGTAGCATGTGATTCATTCTGGGGATGGAAGGAATCTGTCC CGCATCGGGAATAAAATTTATGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 691-869, + strand, RNAz p=0.995509 | |
| 715-869, - strand, RNAz p=0.952996 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 691-869, + strand, RNAz p=0.995509 | |
| 715-869, - strand, RNAz p=0.952996 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_021177, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-208, gnl|bosTau2|chr23 (23432668-23432459) | |
| 1-208, gnl|canFam2|chr12 (4281708-4281880) | |
| 1-208, gnl|dasNov1|scaffold_107596 (4698-4525) | |
| 1-208, gnl|echTel1|scaffold_293691 (8952-8787) | |
| 1-208, gnl|galGal2|chr24 (2996963-2997156) | |
| 1-208, gnl|hg17|chr6 (31882514-31882685) | |
| 1-208, gnl|Hg17|chr6 (31882734-31882526) | |
| 1-208, gnl|loxAfr1|scaffold_97432 (4-151) | |
| 1-208, gnl|mm7|chr17 (33079174-33079021) | |
| 1-208, gnl|Mm7|chr17 (33078968-33079160) | |
| 1-208, gnl|monDom2|scaffold_42 (17585552-17585338) | |
| 1-208, gnl|oryCun1|scaffold_178599 (40786-40621) | |
| 1-208, gnl|panTro1|chr5 (32285329-32285500) | |
| 1-208, gnl|rheMac2|chr4 (31455703-31455874) | |
| 1-208, gnl|rn3|chr19 (42132071-42132212) | |
| 391-869, gnl|bosTau2|chr23 (23428157-23427689) | |
| 391-869, gnl|canFam2|chr26 (11445367-11445668) | |
| 391-869, gnl|dasNov1|scaffold_96060 (10403-10128) | |
| 391-869, gnl|echTel1|scaffold_293691 (9129-9409) | |
| 391-869, gnl|hg17|chr4 (48253792-48254116) | |
| 391-869, gnl|Hg17|chr6 (31873639-31873152) | |
| 391-869, gnl|loxAfr1|scaffold_12481 (64263-63971) | |
| 391-869, gnl|mm7|chr17 (33082525-33082793) | |
| 391-869, gnl|Mm7|chr17 (33082506-33082976) | |
| 391-869, gnl|oryCun1|scaffold_178599 (46492-46764) | |
| 391-869, gnl|panTro1|chr3 (98632924-98632598) | |
| 391-869, gnl|rheMac2|chr5 (43717560-43717872) | |
| 391-869, gnl|rn3|chr19 (42131892-42131626) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-208, gnl|bosTau2|chr23 (23432668-23432459) | |
| 1-208, gnl|canFam2|chr12 (4281708-4281880) | |
| 1-208, gnl|dasNov1|scaffold_107596 (4698-4525) | |
| 1-208, gnl|echTel1|scaffold_293691 (8952-8787) | |
| 1-208, gnl|galGal2|chr24 (2996963-2997156) | |
| 1-208, gnl|hg17|chr6 (31882514-31882685) | |
| 1-208, gnl|Hg17|chr6 (31882734-31882526) | |
| 1-208, gnl|loxAfr1|scaffold_97432 (4-151) | |
| 1-208, gnl|mm7|chr17 (33079174-33079021) | |
| 1-208, gnl|Mm7|chr17 (33078968-33079160) | |
| 1-208, gnl|monDom2|scaffold_42 (17585552-17585338) | |
| 1-208, gnl|oryCun1|scaffold_178599 (40786-40621) | |
| 1-208, gnl|panTro1|chr5 (32285329-32285500) | |
| 1-208, gnl|rheMac2|chr4 (31455703-31455874) | |
| 1-208, gnl|rn3|chr19 (42132071-42132212) | |
| 391-869, gnl|bosTau2|chr23 (23428157-23427689) | |
| 391-869, gnl|canFam2|chr26 (11445367-11445668) | |
| 391-869, gnl|dasNov1|scaffold_96060 (10403-10128) | |
| 391-869, gnl|echTel1|scaffold_293691 (9129-9409) | |
| 391-869, gnl|hg17|chr4 (48253792-48254116) | |
| 391-869, gnl|Hg17|chr6 (31873639-31873152) | |
| 391-869, gnl|loxAfr1|scaffold_12481 (64263-63971) | |
| 391-869, gnl|mm7|chr17 (33082525-33082793) | |
| 391-869, gnl|Mm7|chr17 (33082506-33082976) | |
| 391-869, gnl|oryCun1|scaffold_178599 (46492-46764) | |
| 391-869, gnl|panTro1|chr3 (98632924-98632598) | |
| 391-869, gnl|rheMac2|chr5 (43717560-43717872) | |
| 391-869, gnl|rn3|chr19 (42131892-42131626) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| col (0.390016) | |
| hlv (0.278513) | |
| eep (0.245128) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| cov (0.132153) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| hlv (0.278513) | |
| eep (0.245128) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| cov (0.132153) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |