Ss1.1-LyN1-MLN01A120025.5
|
TTTCATTTTAATCCTGAATGTTGTTACACACGGATCACGTCTGGAGTGGCAGAACGCCCC
CCTCGCCCCCCTCCATTTAATTGTCTGGTATATAATAGTGTCTTGTCCACTAACCCCCAC
CCCAGACGGCTTTCTCAGTGGAGTTTTCTTCTGGTCTTGTCACAGAGCAGATCCTCTCCT
TGTCACCTGGGGCAGGAAGTTTCTCCTGCCTTCGTTTCTTCTGCATTCACATCGCACCCA
CTCAGGTGCGGGGTTCGAGACCCAGAAGCCCAGGTGTGCACATAGTTCTGATTGAGAAAT
TACCCAGAAATCCATCCCCTCCCCACATGTTGCGGGGGAGAGGGCTGGCAAATATTCATT
TTCCTAGAAAATCCTTTAGATCTGGAGACACAGGAAATGAATCCAATTCCCAAAGGGGCC
GCTGCACCCCGAGGCTGAAAACCCCAGTAACGGGGCCGTCCTTGTCCTCGCCAGACTCCA
GAATTTCTCTCCTCAAAGGAAAGAAAACAGGGCATGAGATTGTTGGCAAAGCACAGGACC
AGCTCCAAAAATCCCATGTGTGCTCGATTAAAAGCTGGCTGCCCCCGAGGGTTCCCAGTG
CAAACTTAAAGAGACAGGGCTTTGCTGAAAACCAAACAAGGGCCAGCTGGGTTTTTTTTT
AACAACCTACAGGCTTTCCGGAGCTGCCTGGAACAGAGCCTGCTGGAAACAGGGCTCTCC
CGACACACGCAGTTTCCTGGATGGCCTATTTTGTCCCCAGAATCTCAACATGGTTCTCTT
TCCCATTCCTTGCTTTTTGACCAAAAAAAAAAGGGGGGGAAGGGTGGGGTGGGGATAGGT
TCCCAGCCTCAGCAAGTGTCTTGTGATCGGGAGTAAGATCTCAAGCTCTGAAGTGTCCTG
CGCTCTCTTGTCCAGTTCTCAGCTTGGCCACCAGGGTTGAAGCCAGACCCCATCAGGACA
GAGTAAGCCCTTGGCATTTATACACGTTCATTCAGTAAAGACAAGTGCTGGCCTCTCTCC
TAGCAAAGTAGGTTTCCTGGCTTGATAGAGTCTGTCTTGCTTTGATTTTGATGGAAGGGA
TATACCTAAGACAGAAGGGCTCGGATGGTCAAAAGAGAGGGGTGTGTGTGTGTGTCTGAT
GGTCAGAAGAGAGATGTGTGTGTGTGTGTGTGTTGTGTGTTGTGTGTAAATGAAACCCAG
GCTCACTGGGGAATACCACTGATGGAAGACCACAGCTTTGGGCGGCTTTGAGAAGCGGTA
CAAGAATTGTGTGTGCCTGTATGTCTGGCCCTGGAGCCTGTGGGTGCATTTATTTTAAGC
TTCTAGAAGCAGCTCCTTGAACACTGCCCCCCCCAGATAAAGCCATATTTATGCCTGTGT
TCCCTCCTCCTCCCATACCCACTGGGCTTGGTGTGGTAGGCTACAGGGGGTCCTGCCTCG
GACTCCCCCCCCTTCTCACATGTATTCGTGACCTTTAACTTCACTTTTCCACCACGGTAC
GTCCATTAAGTCAGTATTACTCTTAAATGAAGTATTCCTTTTTGTAATCGTTTTTTAGAA
GGTAGAATTTAATAAAGCTACCTTTATGATAATGCCAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TTTCATTTTAATCCTGAATGTTGTTACACACGGATCACGTCTGGAGTGGCAGAACGCCCC
CCTCGCCCCCCTCCATTTAATTGTCTGGTATATAATAGTGTCTTGTCCACTAACCCCCAC
CCCAGACGGCTTTCTCAGTGGAGTTTTCTTCTGGTCTTGTCACAGAGCAGATCCTCTCCT
TGTCACCTGGGGCAGGAAGTTTCTCCTGCCTTCGTTTCTTCTGCATTCACATCGCACCCA
CTCAGGTGCGGGGTTCGAGACCCAGAAGCCCAGGTGTGCACATAGTTCTGATTGAGAAAT
TACCCAGAAATCCATCCCCTCCCCACATGTTGCGGGGGAGAGGGCTGGCAAATATTCATT
TTCCTAGAAAATCCTTTAGATCTGGAGACACAGGAAATGAATCCAATTCCCAAAGGGGCC
GCTGCACCCCGAGGCTGAAAACCCCAGTAACGGGGCCGTCCTTGTCCTCGCCAGACTCCA
GAATTTCTCTCCTCAAAGGAAAGAAAACAGGGCATGAGATTGTTGGCAAAGCACAGGACC
AGCTCCAAAAATCCCATGTGTGCTCGATTAAAAGCTGGCTGCCCCCGAGGGTTCCCAGTG
CAAACTTAAAGAGACAGGGCTTTGCTGAAAACCAAACAAGGGCCAGCTGGGTTTTTTTTT
AACAACCTACAGGCTTTCCGGAGCTGCCTGGAACAGAGCCTGCTGGAAACAGGGCTCTCC
CGACACACGCAGTTTCCTGGATGGCCTATTTTGTCCCCAGAATCTCAACATGGTTCTCTT
TCCCATTCCTTGCTTTTTGACCAAAAAAAAAAGGGGGGGAAGGGTGGGGTGGGGATAGGT
TCCCAGCCTCAGCAAGTGTCTTGTGATCGGGAGTAAGATCTCAAGCTCTGAAGTGTCCTG
CGCTCTCTTGTCCAGTTCTCAGCTTGGCCACCAGGGTTGAAGCCAGACCCCATCAGGACA
GAGTAAGCCCTTGGCATTTATACACGTTCATTCAGTAAAGACAAGTGCTGGCCTCTCTCC
TAGCAAAGTAGGTTTCCTGGCTTGATAGAGTCTGTCTTGCTTTGATTTTGATGGAAGGGA
TATACCTAAGACAGAAGGGCTCGGATGGTCAAAAGAGAGGGGTGTGTGTGTGTGTCTGAT
GGTCAGAAGAGAGATGTGTGTGTGTGTGTGTGTTGTGTGTTGTGTGTAAATGAAACCCAG
GCTCACTGGGGAATACCACTGATGGAAGACCACAGCTTTGGGCGGCTTTGAGAAGCGGTA
CAAGAATTGTGTGTGCCTGTATGTCTGGCCCTGGAGCCTGTGGGTGCATTTATTTTAAGC
TTCTAGAAGCAGCTCCTTGAACACTGCCCCCCCCAGATAAAGCCATATTTATGCCTGTGT
TCCCTCCTCCTCCCATACCCACTGGGCTTGGTGTGGTAGGCTACAGGGGGTCCTGCCTCG
GACTCCCCCCCCTTCTCACATGTATTCGTGACCTTTAACTTCACTTTTCCACCACGGTAC
GTCCATTAAGTCAGTATTACTCTTAAATGAAGTATTCCTTTTTGTAATCGTTTTTTAGAA
GGTAGAATTTAATAAAGCTACCTTTATGATAATGCCAAAAAAAAAAAA
|
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1-202, gnl|bosTau2|chr7 (11062284-11062085) |
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1-202, gnl|canFam2|chr20 (53095791-53095572) |
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1-202, gnl|hg17|chr19 (11137599-11137784) |
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1-202, gnl|Hg17|chr19 (11137799-11137617) |
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1-202, gnl|mm7|chr9 (21649841-21650099) |
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1-202, gnl|Mm7|chr9 (21650130-21649923) |
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1-202, gnl|panTro1|chr20 (11535341-11535526) |
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1-202, gnl|rheMac2|chr19 (10985772-10985960) |
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1-202, gnl|rn3|chr8 (20867075-20867289) |
| |
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237-1119, gnl|bosTau2|chr7 (11062024-11061162) |
|
237-1119, gnl|Hg17|chr19 (11137396-11136441) |
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237-1119, gnl|Mm7|chr9 (21649822-21648991) |
| |
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1155-1599, gnl|bosTau2|chr7 (11061148-11060703) |
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1155-1599, gnl|Hg17|chr19 (11136392-11135945) |
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1155-1599, gnl|Mm7|chr9 (21648977-21648375) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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1-202, gnl|bosTau2|chr7 (11062284-11062085) |
|
1-202, gnl|canFam2|chr20 (53095791-53095572) |
|
1-202, gnl|hg17|chr19 (11137599-11137784) |
|
1-202, gnl|Hg17|chr19 (11137799-11137617) |
|
1-202, gnl|mm7|chr9 (21649841-21650099) |
|
1-202, gnl|Mm7|chr9 (21650130-21649923) |
|
1-202, gnl|panTro1|chr20 (11535341-11535526) |
|
1-202, gnl|rheMac2|chr19 (10985772-10985960) |
|
1-202, gnl|rn3|chr8 (20867075-20867289) |
| |
|
237-1119, gnl|bosTau2|chr7 (11062024-11061162) |
|
237-1119, gnl|Hg17|chr19 (11137396-11136441) |
|
237-1119, gnl|Mm7|chr9 (21649822-21648991) |
| |
|
1155-1599, gnl|bosTau2|chr7 (11061148-11060703) |
|
1155-1599, gnl|Hg17|chr19 (11136392-11135945) |
|
1155-1599, gnl|Mm7|chr9 (21648977-21648375) |
|
pla (0.534688) |
|
cag (0.302389) |
|
fce (0.271592) |
|
fcc (0.197785) |
|
eye (0.170503) |
|
nje (0.16592) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
eje (0.0988338) |
|
pla (0.534688) |
|
cag (0.302389) |
|
fce (0.271592) |
|
fcc (0.197785) |
|
eye (0.170503) |
|
nje (0.16592) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
eje (0.0988338) |
