Ss1.1-LyN1-MLN01A120073.5
|
GTAGGACTGGTTCTCCTTCCTCCTCCCCCTGCCTCCCTCGTGAGGTCTTTCTCCTTATTC
CATCACCCTTTTGTTCCTTTGCCTCTTGGCTCTTCCTTAAAACTGGCTTATGGCACTCAG
GGTCAGACTGACTATTCATTCTCCAGCATGAATGTGCCTTTTAATTAGAGATCTAGAAAA
GTTCAGCTGGACCTTCCACACTCCCCCCCACGACCACTCTGGTGCCTAAGCCTCAAATTT
TTTAGCAGGTGCTCCCACTCCAGGGAGGCTGACTCAAAGGGAGTGTCTTCCCCAAGCCTA
CCTCTGCTGCCAGAGGTTTTAGCCTGCCTAGGATGAGATATGCAAGGTGGCTCCTGCCAC
TGGACGCCCTTGCTGGGTCCAGCCTGGGTTGACTGCTTAAGATTCAGCTTTCTAGTCCCA
GGGGTGACCTTTCAGCTGGGGGCAGCCAGATCCCCACCACTGACCTTCTGGAAGCCAGCC
CCCATTGTGGAGGCTGAGCTGGTGCCTGGCCCCAATCTCACCTGTGCCTTTATCGCTTTG
AGCATCTCAGCTGCTAACTTGGTTCTTTTTTCCAGAAGCCTTTGTAATGGTTACAAATTA
TTTTCCATTACAGAAGCAGTTGGGCCATGCAAAGAGTATTCCTTTTCTTAGTTCCCCACT
CCTAAATAGCCGTGTTGGTAAAACTAAGAATGACTGCCCTGAGAAATTTGGGGAAATGCA
AAGAATGAAGACCTCCCTTTCTGTCCCCAGATCCTGACTTTTCCAAAGTGCCTTAAAGCA
AAGGAGACAGATACCTTGAGTGGTGACCTCTTTGTTACTTACTTTACTCTTAGAACAAAA
TTCTGACTTTTTTTTTCTTTTTTGTTTTTTCTATTACGTTTTCCTTCATGTTCCATTGGA
ATAGTCAAGTATGTGGCACATTCTCAGGACCAAGGGAAATCCTGCTTCACCTGTTCCCTA
TTTGCTGATCTTCCGGTGCTTTCATGGGGTCCACCTGGGCCCAAGGTCAGTCCTGGACCT
TGCCTGGTTTATGAGATGCTGCAGGGCCTGTTTTTTTTCTCTGGGGAGTTCAAGGCTGAG
GGTTCAGGGAACATTTCTTTCACCTGGAAGTTGTCATATGCTGTGCCTTTCTCTGTTTTT
GTCTGTTCTGTTGCTGGTGACCCCAGAATGGCCTTTGGGAAAGATCGGAGAGCAGAGGTA
GCACAGGAGGGTAAAAGAAATGCTGGTGCTGGCGGCTCTCAGCCCGGGCAGGGTCTCTGC
TGATCCGAGGGCTGGATGTGGGGCACCCCACACAGCTGGGAGGGGAGCTTTCCTGTCCAG
TGACATGTTGTGTACTGTGTATTTTGATTTCCCATGTACGCAAATGTATCTCTTTACCAT
TGTAACCGGGGGATGGGGGGAATGTCTGACCTTGATGTTCAAAACAGAACTGTATTTTTG
CCTTTAAATTTCCAGTAATATAACGTGAATAAATGACCCTATCTTTGTAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTAGGACTGGTTCTCCTTCCTCCTCCCCCTGCCTCCCTCGTGAGGTCTTTCTCCTTATTC
CATCACCCTTTTGTTCCTTTGCCTCTTGGCTCTTCCTTAAAACTGGCTTATGGCACTCAG
GGTCAGACTGACTATTCATTCTCCAGCATGAATGTGCCTTTTAATTAGAGATCTAGAAAA
GTTCAGCTGGACCTTCCACACTCCCCCCCACGACCACTCTGGTGCCTAAGCCTCAAATTT
TTTAGCAGGTGCTCCCACTCCAGGGAGGCTGACTCAAAGGGAGTGTCTTCCCCAAGCCTA
CCTCTGCTGCCAGAGGTTTTAGCCTGCCTAGGATGAGATATGCAAGGTGGCTCCTGCCAC
TGGACGCCCTTGCTGGGTCCAGCCTGGGTTGACTGCTTAAGATTCAGCTTTCTAGTCCCA
GGGGTGACCTTTCAGCTGGGGGCAGCCAGATCCCCACCACTGACCTTCTGGAAGCCAGCC
CCCATTGTGGAGGCTGAGCTGGTGCCTGGCCCCAATCTCACCTGTGCCTTTATCGCTTTG
AGCATCTCAGCTGCTAACTTGGTTCTTTTTTCCAGAAGCCTTTGTAATGGTTACAAATTA
TTTTCCATTACAGAAGCAGTTGGGCCATGCAAAGAGTATTCCTTTTCTTAGTTCCCCACT
CCTAAATAGCCGTGTTGGTAAAACTAAGAATGACTGCCCTGAGAAATTTGGGGAAATGCA
AAGAATGAAGACCTCCCTTTCTGTCCCCAGATCCTGACTTTTCCAAAGTGCCTTAAAGCA
AAGGAGACAGATACCTTGAGTGGTGACCTCTTTGTTACTTACTTTACTCTTAGAACAAAA
TTCTGACTTTTTTTTTCTTTTTTGTTTTTTCTATTACGTTTTCCTTCATGTTCCATTGGA
ATAGTCAAGTATGTGGCACATTCTCAGGACCAAGGGAAATCCTGCTTCACCTGTTCCCTA
TTTGCTGATCTTCCGGTGCTTTCATGGGGTCCACCTGGGCCCAAGGTCAGTCCTGGACCT
TGCCTGGTTTATGAGATGCTGCAGGGCCTGTTTTTTTTCTCTGGGGAGTTCAAGGCTGAG
GGTTCAGGGAACATTTCTTTCACCTGGAAGTTGTCATATGCTGTGCCTTTCTCTGTTTTT
GTCTGTTCTGTTGCTGGTGACCCCAGAATGGCCTTTGGGAAAGATCGGAGAGCAGAGGTA
GCACAGGAGGGTAAAAGAAATGCTGGTGCTGGCGGCTCTCAGCCCGGGCAGGGTCTCTGC
TGATCCGAGGGCTGGATGTGGGGCACCCCACACAGCTGGGAGGGGAGCTTTCCTGTCCAG
TGACATGTTGTGTACTGTGTATTTTGATTTCCCATGTACGCAAATGTATCTCTTTACCAT
TGTAACCGGGGGATGGGGGGAATGTCTGACCTTGATGTTCAAAACAGAACTGTATTTTTG
CCTTTAAATTTCCAGTAATATAACGTGAATAAATGACCCTATCTTTGTAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1156-1247, + strand, RNAmicro p=0.960131 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
1156-1247, + strand, RNAmicro p=0.960131 |
|
5' of NM_001497, + |
|
5' of NM_001497, + |
Human gene identifier and UTR site,
human gene reading direction
|
5' of NM_001497, + |
|
5' of NM_001497, + |
|
286-447, gnl|bosTau2|chr5 (33701085-33701249) |
|
286-447, gnl|canFam2|chr11 (53252985-53253336) |
|
286-447, gnl|dasNov1|scaffold_5113 (65460-64981) |
|
286-447, gnl|echTel1|scaffold_307731 (14007-14374) |
|
286-447, gnl|hg17|chr9 (33101451-33101842) |
|
286-447, gnl|Hg17|chr9 (33101841-33101664) |
|
286-447, gnl|mm7|chr4 (40943758-40944152) |
|
286-447, gnl|oryCun1|scaffold_78751 (906-541) |
|
286-447, gnl|panTro1|chr11 (33598915-33599307) |
|
286-447, gnl|rheMac2|chr15 (44120832-44120440) |
|
286-447, gnl|rn3|chr5 (58195555-58195927) |
| |
|
468-1490, gnl|bosTau2|chr5 (33701249-33702239) |
|
468-1490, gnl|Hg17|chr9 (33101664-33100640) |
|
468-1490, gnl|Mm7|chr4 (40943973-40943065) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
286-447, gnl|bosTau2|chr5 (33701085-33701249) |
|
286-447, gnl|canFam2|chr11 (53252985-53253336) |
|
286-447, gnl|dasNov1|scaffold_5113 (65460-64981) |
|
286-447, gnl|echTel1|scaffold_307731 (14007-14374) |
|
286-447, gnl|hg17|chr9 (33101451-33101842) |
|
286-447, gnl|Hg17|chr9 (33101841-33101664) |
|
286-447, gnl|mm7|chr4 (40943758-40944152) |
|
286-447, gnl|oryCun1|scaffold_78751 (906-541) |
|
286-447, gnl|panTro1|chr11 (33598915-33599307) |
|
286-447, gnl|rheMac2|chr15 (44120832-44120440) |
|
286-447, gnl|rn3|chr5 (58195555-58195927) |
| |
|
468-1490, gnl|bosTau2|chr5 (33701249-33702239) |
|
468-1490, gnl|Hg17|chr9 (33101664-33100640) |
|
468-1490, gnl|Mm7|chr4 (40943973-40943065) |
|
cga (0.558191) |
|
col (0.390016) |
|
ova (0.258264) |
|
cly (0.241284) |
|
cty (0.20816) |
|
nlu (0.191681) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
cje (0.165235) |
|
mga (0.160205) |
|
cli (0.152812) |
|
che (0.136314) |
|
eep (0.122564) |
|
clu (0.119646) |
|
eje (0.0988338) |
|
cga (0.558191) |
|
col (0.390016) |
|
ova (0.258264) |
|
cly (0.241284) |
|
cty (0.20816) |
|
nlu (0.191681) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
cje (0.165235) |
|
mga (0.160205) |
|
cli (0.152812) |
|
che (0.136314) |
|
eep (0.122564) |
|
clu (0.119646) |
|
eje (0.0988338) |
