Non-Coding RNA Search

Ss1.1-LyN1-MLN01A120098.5

Sequence:


               
               GGGAGCTGGTTTCCTTTTCCTGGACCCGGTGGAGGGCCCTCTAGTTTCATCGCGAGCCGC
CCGGTCCCCCCGCCCTCTGAGGGGCACCTGCGCAGGAGTCTGAGAAATCCTCTTCCAGAG
TTCTAGAATGGAGATGGAAGGGGACCCAGAGATGCAAAGAAATGGGGAAATCCAGAATGA
TGACATAAGTGCACTACCAAATGAGATGTTGGCTGAGGAGCCAGAGGTGGTCCTGATAGC
ACCTCCCCAGGTCCAGGTGCCACCAGAGAGCTTCAAAGACTCTGAAGAAGACCTGGAGAC
CGTGCCCCGAGGGAGACCTCTCACCCCTGCAGCCTCCAGGCAGAGATTCCGGAAGTTCCG
CTACGAGGATGCGGCTGGGCCCAGGGATGTCCTCAGACAACTCCAGGAGCTTGCCGGACA
GTGGCTGAGGCCCGACATTCACACAAAGGAGCAGATTGTGGAAATGCTGGTGCAGGAGCA
ACTCCAGGCTGTCCTCCCTGAGGAGCTCAGAGCCAGGGCACAGAGATGTCAGCCTGGGGT
CAGAATCACTGGCTGAATCTCGCTGCTTGCTTCTTGCTCAGCCTACATGTGGGAAGTAAG
CAAAGGCTCTCTCTGTTGCAAGATCGAGCTGCAGGCGTGGGAAATCTGAACCTCAGTTTT
CTTCGAGCTTGCCTTTGACTAGCTGTAGGAAGAATCAGAACCCATGCCTGGACCCTTTTC
TGGCTGCAGCAGCTCTATTTCCTGGGACTGTGAACTCCAGAATGAGTTTCCCTGCCCTCT
TGTTAGGACAATCAGCCTGCTGCTTCGTTTTTGCTCTGCTAAGATGCCCCCTTTTTTGCA
CTTTGTGACATGCTTTAATATATTGTTTTTGTTGTTGTTTCTTTTTTTAATGTACCCAAA
GAGGTGATTGCCTCAGCTTTAATATTCTTGATTCTTGCTGTGGTGGCATGAATGGAAGCT
TCTGTAACCCCACCAGTAACTCATTTGGGATGTCCTTGAAATATTAAAGTTCGGGGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCTGGTTTCCTTTTCCTGGACCCGGTGGAGGGCCCTCTAGTTTCATCGCGAGCCGC
CCGGTCCCCCCGCCCTCTGAGGGGCACCTGCGCAGGAGTCTGAGAAATCCTCTTCCAGAG
TTCTAGAATGGAGATGGAAGGGGACCCAGAGATGCAAAGAAATGGGGAAATCCAGAATGA
TGACATAAGTGCACTACCAAATGAGATGTTGGCTGAGGAGCCAGAGGTGGTCCTGATAGC
ACCTCCCCAGGTCCAGGTGCCACCAGAGAGCTTCAAAGACTCTGAAGAAGACCTGGAGAC
CGTGCCCCGAGGGAGACCTCTCACCCCTGCAGCCTCCAGGCAGAGATTCCGGAAGTTCCG
CTACGAGGATGCGGCTGGGCCCAGGGATGTCCTCAGACAACTCCAGGAGCTTGCCGGACA
GTGGCTGAGGCCCGACATTCACACAAAGGAGCAGATTGTGGAAATGCTGGTGCAGGAGCA
ACTCCAGGCTGTCCTCCCTGAGGAGCTCAGAGCCAGGGCACAGAGATGTCAGCCTGGGGT
CAGAATCACTGGCTGAATCTCGCTGCTTGCTTCTTGCTCAGCCTACATGTGGGAAGTAAG
CAAAGGCTCTCTCTGTTGCAAGATCGAGCTGCAGGCGTGGGAAATCTGAACCTCAGTTTT
CTTCGAGCTTGCCTTTGACTAGCTGTAGGAAGAATCAGAACCCATGCCTGGACCCTTTTC
TGGCTGCAGCAGCTCTATTTCCTGGGACTGTGAACTCCAGAATGAGTTTCCCTGCCCTCT
TGTTAGGACAATCAGCCTGCTGCTTCGTTTTTGCTCTGCTAAGATGCCCCCTTTTTTGCA
CTTTGTGACATGCTTTAATATATTGTTTTTGTTGTTGTTTCTTTTTTTAATGTACCCAAA
GAGGTGATTGCCTCAGCTTTAATATTCTTGATTCTTGCTGTGGTGGCATGAATGGAAGCT
TCTGTAACCCCACCAGTAACTCATTTGGGATGTCCTTGAAATATTAAAGTTCGGGGTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824010|ref|XP_592986.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824010|ref|XP_592986.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               212-330, - strand, RNAz p=0.955247
               

               
               681-817, - strand, RNAz p=0.989454

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-330, - strand, RNAz p=0.955247
               

               
               681-817, - strand, RNAz p=0.989454

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               15-1011, gnl|bosTau2|chr2 (86508042-86507081)
               

               
               15-1011, gnl|Hg17|chr1 (22102072-22103008)
               


               
               341-556, gnl|bosTau2|chr13 (46206196-46206411)
               

               
               341-556, gnl|canFam2|chr24 (27793270-27793767)
               

               
               341-556, gnl|dasNov1|scaffold_2507 (103656-104125)
               

               
               341-556, gnl|echTel1|scaffold_309798 (84835-85263)
               

               
               341-556, gnl|hg17|chr20 (34005015-34005511)
               

               
               341-556, gnl|Hg17|chr20 (34005296-34005081)
               

               
               341-556, gnl|loxAfr1|scaffold_29083 (12644-13151)
               

               
               341-556, gnl|mm7|chr2 (156052753-156053103)
               

               
               341-556, gnl|Mm7|chr2 (156052993-156052778)
               

               
               341-556, gnl|monDom2|scaffold_6 (11109423-11108930)
               

               
               341-556, gnl|oryCun1|scaffold_143027 (25188-24754)
               

               
               341-556, gnl|panTro1|chr21 (36225996-36226492)
               

               
               341-556, gnl|rheMac2|chr10 (28569615-28569119)
               

               
               341-556, gnl|rn3|chr3 (146616106-146616456)
               


               
               852-1009, gnl|bosTau2|chr16 (12071520-12071676)
               

               
               852-1009, gnl|Hg17|chr1 (22102865-22103006)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1011, gnl|bosTau2|chr2 (86508042-86507081)
               

               
               15-1011, gnl|Hg17|chr1 (22102072-22103008)
               


               
               341-556, gnl|bosTau2|chr13 (46206196-46206411)
               

               
               341-556, gnl|canFam2|chr24 (27793270-27793767)
               

               
               341-556, gnl|dasNov1|scaffold_2507 (103656-104125)
               

               
               341-556, gnl|echTel1|scaffold_309798 (84835-85263)
               

               
               341-556, gnl|hg17|chr20 (34005015-34005511)
               

               
               341-556, gnl|Hg17|chr20 (34005296-34005081)
               

               
               341-556, gnl|loxAfr1|scaffold_29083 (12644-13151)
               

               
               341-556, gnl|mm7|chr2 (156052753-156053103)
               

               
               341-556, gnl|Mm7|chr2 (156052993-156052778)
               

               
               341-556, gnl|monDom2|scaffold_6 (11109423-11108930)
               

               
               341-556, gnl|oryCun1|scaffold_143027 (25188-24754)
               

               
               341-556, gnl|panTro1|chr21 (36225996-36226492)
               

               
               341-556, gnl|rheMac2|chr10 (28569615-28569119)
               

               
               341-556, gnl|rn3|chr3 (146616106-146616456)
               


               
               852-1009, gnl|bosTau2|chr16 (12071520-12071676)
               

               
               852-1009, gnl|Hg17|chr1 (22102865-22103006)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ecc (0.345105)
               

               
               cag (0.302389)
               

               
               cly (0.241284)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               cag (0.302389)
               

               
               cly (0.241284)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	212-330, - strand, RNAz p=0.955247
	681-817, - strand, RNAz p=0.989454

	15-1011, gnl\|bosTau2\|chr2 (86508042-86507081)
	15-1011, gnl\|Hg17\|chr1 (22102072-22103008)

	341-556, gnl\|bosTau2\|chr13 (46206196-46206411)
	341-556, gnl\|canFam2\|chr24 (27793270-27793767)
	341-556, gnl\|dasNov1\|scaffold_2507 (103656-104125)
	341-556, gnl\|echTel1\|scaffold_309798 (84835-85263)
	341-556, gnl\|hg17\|chr20 (34005015-34005511)
	341-556, gnl\|Hg17\|chr20 (34005296-34005081)
	341-556, gnl\|loxAfr1\|scaffold_29083 (12644-13151)
	341-556, gnl\|mm7\|chr2 (156052753-156053103)
	341-556, gnl\|Mm7\|chr2 (156052993-156052778)
	341-556, gnl\|monDom2\|scaffold_6 (11109423-11108930)
	341-556, gnl\|oryCun1\|scaffold_143027 (25188-24754)
	341-556, gnl\|panTro1\|chr21 (36225996-36226492)
	341-556, gnl\|rheMac2\|chr10 (28569615-28569119)
	341-556, gnl\|rn3\|chr3 (146616106-146616456)

	852-1009, gnl\|bosTau2\|chr16 (12071520-12071676)
	852-1009, gnl\|Hg17\|chr1 (22102865-22103006)

	ecc (0.345105)
	cag (0.302389)
	cly (0.241284)
	fhi (0.169578)
	csp (0.161186)
	lin (0.145603)
	ebs (0.118301)
	med (0.116252)
	cbl (0.114797)