Non-Coding RNA Search

Ss1.1-LyN1-MLN01B010005.5

Sequence:


               
               ACGTCACTTCCTCCAACCTCGGCGTTTGCCGGGCGGGTTCCCACGCGCGTTCAGCATGAG
GATTGAGAAGTGTTATTTCTGTTCGGGGCCTATCTACCCAGGCCATGGCATGATGTTCGT
CCGTAACGATTGCAAGGTGTTCAGATTCTGTAAATCCAAATGTCATAAAAACTTCAAGAA
GAAGCGCAATCCTCGCAAGGTCAGATGGACTAAAGCGTTCAGGAAAGCAGCTGGTAAAGA
GCTCACGGTGGATAATTCATTTGAATTTGAAAAACGTAGAAATGAACCTGTCAAATACCA
GCGAGAGCTATGGAATAAAACTATTGATGCAATGAAGAGAGTTGAAGAGATCAAACAGAA
ACGTCAAGCTAAATTTATAATGAACAGGTTGAAGAAAAATAAAGAACTTCAGAAAGTTCA
GGATATTAAAGAAGTCAAGCAAAACATCCATCTTATCCGGGCCCCTCTTGCAGGGAAAGG
AAAGCAGCTGGAAGACAAAATGGTACAGCAATTACAACAGGATGTGGACATGGAAGATGT
TTCTTAAAACCCTTACCGTCTGTAACCATTTCTTTAAGTGCATTTGAAAAGCTCCTTTGG
AAACTTAGAACTTCTAAATTATTGATTTATTTTTTACAGTCAAATGAAAGGGGATTAAAG
TACTTCTCTTCTACATTGCTATCTGCAGAACACCAGATATTATGGATGCTAGATTGCATC
TCAGCATTAAACCTTCCCTGAGAGAGACATCTTTTATAAATCATCAAAGTTCTGTTTGTA
AATACCAAAGTGAATTGTGGATATAAAATGGTCATGTCATTGGTTAATGACTAGGCAGCA
TTTATGTAATAACTAAAGACATTCATGGCTAGTGATATATAAAAATTTTCTTTGCAGTAA
AATATTCTCTTTATTGATGTTCTAGAAGAGATACAGCAAGGAACTAACAATCTGTATGAT
ACTTAGCCTCAAGTATTTTCTTTTGATTTCACTTTTTCCAGTTTTGGTTTATTAGATTCT
TAGAAGAACATAATGATCTAATATTTTGAAGCCTAATTATGTTGGACTGTTTTGACCTGG
TTTAACTGTTATGATAGGCATTTGTTAAGGGTGAGAACTGAATAATCTGTTCTCAAAATA
TCACTATAATTTCCACTTTGGAGGATGCTCAATTCTAACTTGAGATTTCTGGCAGAATAA
ACCTTATTTTTTCAGCTTTGCAGTAATTGAGAAGCAGAGGAATCTTTTACCTACTAAAAT
TTCTTGTGTGGTTTTCTTTTAAAAAAATTCTTAATTGTTTTTGGGAAATTGGACATTTGG
GTAGCTTAGTAATTTTTTGTTTGCACATAAAATCATTTTTAATGTGCATGCCTATGTATT
TAAAAATACAAAACAAAAGGTATGAAGTATTGATTACTTGGAAGAAAATTACTTTGCTCA
CATACTCTTGAAGTAGGAGATAATTTTTAAAGAATAATGTGTATTTCAGAGTTCCTGTTG
TGGTGCAGCAGAAATGAATCCAACTAGGAACCACAAGGTTTCGGGTTTGATCCCTGGCCT
TGCTCAGCGGGTTAAGGATCTGGTGTTGCCATGATCTGTGGTGTAGGTTGCAGATGCGGC
TTGGATGTGGCGTGGCTGTGGCGTAGGCCAGCAGCTGTAGCTCCAGTTCGACCCTAAGCC
TGGGAACCTCCATGTGCCGTGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTCACTTCCTCCAACCTCGGCGTTTGCCGGGCGGGTTCCCACGCGCGTTCAGCATGAG
GATTGAGAAGTGTTATTTCTGTTCGGGGCCTATCTACCCAGGCCATGGCATGATGTTCGT
CCGTAACGATTGCAAGGTGTTCAGATTCTGTAAATCCAAATGTCATAAAAACTTCAAGAA
GAAGCGCAATCCTCGCAAGGTCAGATGGACTAAAGCGTTCAGGAAAGCAGCTGGTAAAGA
GCTCACGGTGGATAATTCATTTGAATTTGAAAAACGTAGAAATGAACCTGTCAAATACCA
GCGAGAGCTATGGAATAAAACTATTGATGCAATGAAGAGAGTTGAAGAGATCAAACAGAA
ACGTCAAGCTAAATTTATAATGAACAGGTTGAAGAAAAATAAAGAACTTCAGAAAGTTCA
GGATATTAAAGAAGTCAAGCAAAACATCCATCTTATCCGGGCCCCTCTTGCAGGGAAAGG
AAAGCAGCTGGAAGACAAAATGGTACAGCAATTACAACAGGATGTGGACATGGAAGATGT
TTCTTAAAACCCTTACCGTCTGTAACCATTTCTTTAAGTGCATTTGAAAAGCTCCTTTGG
AAACTTAGAACTTCTAAATTATTGATTTATTTTTTACAGTCAAATGAAAGGGGATTAAAG
TACTTCTCTTCTACATTGCTATCTGCAGAACACCAGATATTATGGATGCTAGATTGCATC
TCAGCATTAAACCTTCCCTGAGAGAGACATCTTTTATAAATCATCAAAGTTCTGTTTGTA
AATACCAAAGTGAATTGTGGATATAAAATGGTCATGTCATTGGTTAATGACTAGGCAGCA
TTTATGTAATAACTAAAGACATTCATGGCTAGTGATATATAAAAATTTTCTTTGCAGTAA
AATATTCTCTTTATTGATGTTCTAGAAGAGATACAGCAAGGAACTAACAATCTGTATGAT
ACTTAGCCTCAAGTATTTTCTTTTGATTTCACTTTTTCCAGTTTTGGTTTATTAGATTCT
TAGAAGAACATAATGATCTAATATTTTGAAGCCTAATTATGTTGGACTGTTTTGACCTGG
TTTAACTGTTATGATAGGCATTTGTTAAGGGTGAGAACTGAATAATCTGTTCTCAAAATA
TCACTATAATTTCCACTTTGGAGGATGCTCAATTCTAACTTGAGATTTCTGGCAGAATAA
ACCTTATTTTTTCAGCTTTGCAGTAATTGAGAAGCAGAGGAATCTTTTACCTACTAAAAT
TTCTTGTGTGGTTTTCTTTTAAAAAAATTCTTAATTGTTTTTGGGAAATTGGACATTTGG
GTAGCTTAGTAATTTTTTGTTTGCACATAAAATCATTTTTAATGTGCATGCCTATGTATT
TAAAAATACAAAACAAAAGGTATGAAGTATTGATTACTTGGAAGAAAATTACTTTGCTCA
CATACTCTTGAAGTAGGAGATAATTTTTAAAGAATAATGTGTATTTCAGAGTTCCTGTTG
TGGTGCAGCAGAAATGAATCCAACTAGGAACCACAAGGTTTCGGGTTTGATCCCTGGCCT
TGCTCAGCGGGTTAAGGATCTGGTGTTGCCATGATCTGTGGTGTAGGTTGCAGATGCGGC
TTGGATGTGGCGTGGCTGTGGCGTAGGCCAGCAGCTGTAGCTCCAGTTCGACCCTAAGCC
TGGGAACCTCCATGTGCCGTGGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9BS42_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9BS42_HUMAN

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               637-902, gnl|bosTau2|chr13 (30650647-30650377)
               

               
               637-902, gnl|Hg17|chr6 (27856285-27856010)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               637-902, gnl|bosTau2|chr13 (30650647-30650377)
               

               
               637-902, gnl|Hg17|chr6 (27856285-27856010)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

Help | Less info


               
               vin (0.665115)
               

               
               kid (0.518941)
               

               
               nlu (0.383362)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               kid (0.518941)
               

               
               nlu (0.383362)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	637-902, gnl\|bosTau2\|chr13 (30650647-30650377)
	637-902, gnl\|Hg17\|chr6 (27856285-27856010)

	vin (0.665115)
	kid (0.518941)
	nlu (0.383362)
	fce (0.271592)
	ese (0.253004)
	pan (0.23596)
	mgp (0.230681)
	spc (0.226732)
	mas (0.210305)
	sto (0.179824)
	ton (0.1755)
	mcp (0.170648)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	csp (0.161186)
	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	pty (0.142714)
	hlv (0.139256)
	nca (0.136874)
	che (0.136314)
	ste (0.135208)
	lyg (0.133103)
	nmm (0.132802)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	ecc (0.115035)
	cbl (0.114797)
	cty (0.10408)