Non-Coding RNA Search

Ss1.1-LyN1-MLN01B010027.5

Sequence:


               
               CTTCTCTGTGGCCGCCACTTGGGGGCGGGGGGAGGCGGAGCTCGGTGCTGCAGCATGCAA
TCCAGGCCGCCCGCCTTCCGGGCCAGGTGGGGGCCGGTCGCCAGGCTGAGATCGGCGGGA
GCCGGTGGGCTGTCTTTGAGCTGGGTCAGCGCCACTGTCGAACCTAAGTGAGGAGGCACG
GGGAAGGGCCCAAGAGGGCCCTCGGGCGTTGGAGGGGGCTTCGCGGACGAGAGCTGGGGG
CCCCGCTCGCCATGGGGGAGGTGGAGATCTCCGCCCGGGCCTACGTGAAGATGTGTCTGC
ACGCCGCCCGCTACCCGCATGCCGCTGTCAACGGGCTATTGCTGGCGCCCGCGCCGCGGT
CGGGAGAATGCCTGTGCCTCACCGACTGTGTCCCCCTGTTCCACAGCCACCTGGCCTTGT
CTGTCATGCTGGAGGTCGCCCTCAACCAGGTGGATGTGTGGGGCGCGCAGGCCGGGCTGG
TAGTGGCAGGGTACTACCATGCCAATGCAGCTTTGGACGACCAGAGCCCTGGGCCCCTGG
CCTTGAAAATCGCTGGGCGGATTGCAGAATTCTTTCCTGACGCAGTACTCATTATGTTGG
ATAATCAGAAACTGGTGCCCCAGCCTCATGTGCCCCCAGTTATCGTCCTGGAGAACCATG
GTCTCCGCTGGGTCCCCAAGGACAAGAACTTAGTGATGTGGAGGGACTGGGAAGAGTCAC
GGCAGATGGTGGGAGCCTTACTAGAGGGCCGGGCCCACCAGCACCTTGTGGACTTTGACT
GCCATCTTGATGACATCCGGGAGGACTGGACCAACCAGCAGCTCAACGTCCAGATCACCC
AGTGGGTTGGTTCCACCAGTGGAAAGACCTGAGCCAGGGCCAGAGGGGAGGCCCAGGATT
CAATAAAGAGACTTGGGCTGTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCTGTGGCCGCCACTTGGGGGCGGGGGGAGGCGGAGCTCGGTGCTGCAGCATGCAA
TCCAGGCCGCCCGCCTTCCGGGCCAGGTGGGGGCCGGTCGCCAGGCTGAGATCGGCGGGA
GCCGGTGGGCTGTCTTTGAGCTGGGTCAGCGCCACTGTCGAACCTAAGTGAGGAGGCACG
GGGAAGGGCCCAAGAGGGCCCTCGGGCGTTGGAGGGGGCTTCGCGGACGAGAGCTGGGGG
CCCCGCTCGCCATGGGGGAGGTGGAGATCTCCGCCCGGGCCTACGTGAAGATGTGTCTGC
ACGCCGCCCGCTACCCGCATGCCGCTGTCAACGGGCTATTGCTGGCGCCCGCGCCGCGGT
CGGGAGAATGCCTGTGCCTCACCGACTGTGTCCCCCTGTTCCACAGCCACCTGGCCTTGT
CTGTCATGCTGGAGGTCGCCCTCAACCAGGTGGATGTGTGGGGCGCGCAGGCCGGGCTGG
TAGTGGCAGGGTACTACCATGCCAATGCAGCTTTGGACGACCAGAGCCCTGGGCCCCTGG
CCTTGAAAATCGCTGGGCGGATTGCAGAATTCTTTCCTGACGCAGTACTCATTATGTTGG
ATAATCAGAAACTGGTGCCCCAGCCTCATGTGCCCCCAGTTATCGTCCTGGAGAACCATG
GTCTCCGCTGGGTCCCCAAGGACAAGAACTTAGTGATGTGGAGGGACTGGGAAGAGTCAC
GGCAGATGGTGGGAGCCTTACTAGAGGGCCGGGCCCACCAGCACCTTGTGGACTTTGACT
GCCATCTTGATGACATCCGGGAGGACTGGACCAACCAGCAGCTCAACGTCCAGATCACCC
AGTGGGTTGGTTCCACCAGTGGAAAGACCTGAGCCAGGGCCAGAGGGGAGGCCCAGGATT
CAATAAAGAGACTTGGGCTGTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61867644|ref|XP_586913.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61867644|ref|XP_586913.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               811-924, + strand, RNAz p=0.998278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               811-924, + strand, RNAz p=0.998278

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               13-452, gnl|bosTau2|chr10 (12368691-12369113)
               

               
               13-452, gnl|Hg17|chr14 (23680629-23680153)
               

               
               13-452, gnl|Mm7|chr14 (50452694-50452257)
               


               
               692-924, gnl|bosTau2|chr10 (12370805-12371037)
               

               
               692-924, gnl|Hg17|chr14 (23678245-23678011)
               

               
               692-924, gnl|Mm7|chr14 (50449046-50448826)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-452, gnl|bosTau2|chr10 (12368691-12369113)
               

               
               13-452, gnl|Hg17|chr14 (23680629-23680153)
               

               
               13-452, gnl|Mm7|chr14 (50452694-50452257)
               


               
               692-924, gnl|bosTau2|chr10 (12370805-12371037)
               

               
               692-924, gnl|Hg17|chr14 (23678245-23678011)
               

               
               692-924, gnl|Mm7|chr14 (50449046-50448826)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cga (0.279096)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	13-452, gnl\|bosTau2\|chr10 (12368691-12369113)
	13-452, gnl\|Hg17\|chr14 (23680629-23680153)
	13-452, gnl\|Mm7\|chr14 (50452694-50452257)

	692-924, gnl\|bosTau2\|chr10 (12370805-12371037)
	692-924, gnl\|Hg17\|chr14 (23678245-23678011)
	692-924, gnl\|Mm7\|chr14 (50449046-50448826)

	cga (0.279096)
	cly (0.241284)
	ecc (0.23007)
	hea (0.204499)
	fbs (0.175346)
	fhi (0.169578)
	hyp (0.142837)
	nca (0.136874)
	pla (0.133672)
	eep (0.122564)
	med (0.116252)
	nbm (0.0993246)
	eje (0.0988338)