Ss1.1-LyN1-MLN01B010037.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAGGGCAAACAGCGAGTCAGAATCTGGTATTTTCTGCATGTCCTCCCTCTCAGATGAT GATGATTTGGGATGGTGCAATTCCTGGCCTTCAACTGCTTGGCACTGTTTTTTGAAAGGC ACACGACTGTGCTTTCATAAGGGAAGCAATAAGGAATGGCAGGATGTGGAAGATTTTGCC AGAACCGAAGGCTGTGATAATGAGGAAGATCTCCAGATGGGCACTCACAAGGGCTATGGT TCTGATGGTCTAAAGTTGTTATCACATGAAGAAAGTGTATCATTTGGCGAGTCTGTACTG AAGTTGACTTTTGATCCTGGTACAGTAGAAGATGGTTTACTTACTGTAGAGTGTAAACTG GACCACCCTTTCTATGTTAAAAATAAAGGTTGGTCTTCATTTTATCCAAGCTTGACTGTG GTGCAGCATGGCATTCCATGTTGTGAAATTCATGTTGGTGATGTATGTCTACCTCCTGGA CACCCCGATGCCATTAATTTTGATGATTCAGGTGTTTTTGATACATTTAAAAGCTATGAC TTCACGCCTATGGATTCTTCTGCAGTCTATGTGCTAAGTAGTATGGCTCGCCAGCGTCGT GCATCTTTGTCTTGTGGAGGACCTGGAGGTCAAGACTTTGCAAGATCTGCATTCAGTAAA AACTGTGGCTCACCTGGACCATCACAGCTCTCTTCCAGTTCTTTGTATGCAAAAGCTGTC AAGAACCACAGCTCAGGGACTGTGAGTGCCACTTCTCCTAACAAGTGCAAAAGACCAATG AATGCCTTCATGCTTTTTGCCAAAAAATACAGAGTTGAATATACTCAGATGTATCCAGGG AAAGATAACAGAGCCATAAGTGTGATCCTTGGTGACAGGTGGAAGAAAATGAAAAATGAA GAGAGAAGGATGTATACATTAGAAGCAAAGGCTTTGGCTGAAGAACAAAAACGTTTAAAT CCTGACTGTTGGAAACGGAAAAGAACCAATTCAGGCTCACAACAACATTAAACCAGGATG ATTATGTTCTTAAGTCTGTATTTGCATAAACATTGACTGTCAGTGGAAAGACTTAAGAAG ATCAAGGTCTCACCGTATGTCCTGAATCTGTGTGACCATAAGATACTGACAGCATTGAGT CTTGAAATGATTTAATAATAAGAGTGAGGATTTGCTTTCTCCATTAGAGCATTAAGTAAG CTAAAACTATCAACATTGTAAACCAAATTGCCTTATTTTTCTTCCAAACTTCATATATGT CTATCAGGTAATATAGGCTTGAAAATTGATATCCTGTGGTGCTAAAGTACAGTAGAAAGA AGTGTATACATGTTCTATTTTAAATTGTACAAAAGGGGAATTTAAAAATATGTAACTGCT GTTTATACATTGGCTCCTTACTGCTTATTAATCTGTATTGTACACATAACGGAATGAAGC AGAAGCCGGGAGTTGGCCTTTCCTTGAGCAGCCACCACATGGCTCAGCGTCTGTGCCAAA CACGGAGGCTCCTAGTCTGGCCAGTGCCAAGAGGGTGCCAGAACATGGGGCAGGTGAGTG GTGTCAGTGTCCCAGCCTAAGAGCCACCTGCTGCAGCCCCAGGGCCCACGGAGCAGATGC ACCCGGTGGCGGCACCCTTTCCCTACGTCGATGGAGACCTGCCCAGGCCAAGGTAAAGTT AGTTAATAGCATTGGGATATAGTCACTGTAATGGTGCTATTAACAGTTGACACCATTGTA TTTTTAACTTTGTGTCCTCTATCTCCTCAGCCACGTATCTCAATATCGTATTTGTCATCG TATCTCTATGGTGGGGGCGGACTTTGCACTTAAGCAGTGCAACACTTGCACTTTACTTTC CTCCAACTGTCTACAATGAGAGCAAACACATTGGCAATACAGCTGCTTTTGCTCTGAGCT ACAATCATGGCTTTTCATGTTACTTACCAAGTGGTGTTTCTGGTTAAGAATCACAGCTGT AAAATTGATTTCAGTTCATTACACTTCTTCATGATGTTGCCCCTAAATTTTGCACACTAT ATTCTTGTATATTATTTCAAATAAAATGAAAAAAATTGTTAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAGGGCAAACAGCGAGTCAGAATCTGGTATTTTCTGCATGTCCTCCCTCTCAGATGAT GATGATTTGGGATGGTGCAATTCCTGGCCTTCAACTGCTTGGCACTGTTTTTTGAAAGGC ACACGACTGTGCTTTCATAAGGGAAGCAATAAGGAATGGCAGGATGTGGAAGATTTTGCC AGAACCGAAGGCTGTGATAATGAGGAAGATCTCCAGATGGGCACTCACAAGGGCTATGGT TCTGATGGTCTAAAGTTGTTATCACATGAAGAAAGTGTATCATTTGGCGAGTCTGTACTG AAGTTGACTTTTGATCCTGGTACAGTAGAAGATGGTTTACTTACTGTAGAGTGTAAACTG GACCACCCTTTCTATGTTAAAAATAAAGGTTGGTCTTCATTTTATCCAAGCTTGACTGTG GTGCAGCATGGCATTCCATGTTGTGAAATTCATGTTGGTGATGTATGTCTACCTCCTGGA CACCCCGATGCCATTAATTTTGATGATTCAGGTGTTTTTGATACATTTAAAAGCTATGAC TTCACGCCTATGGATTCTTCTGCAGTCTATGTGCTAAGTAGTATGGCTCGCCAGCGTCGT GCATCTTTGTCTTGTGGAGGACCTGGAGGTCAAGACTTTGCAAGATCTGCATTCAGTAAA AACTGTGGCTCACCTGGACCATCACAGCTCTCTTCCAGTTCTTTGTATGCAAAAGCTGTC AAGAACCACAGCTCAGGGACTGTGAGTGCCACTTCTCCTAACAAGTGCAAAAGACCAATG AATGCCTTCATGCTTTTTGCCAAAAAATACAGAGTTGAATATACTCAGATGTATCCAGGG AAAGATAACAGAGCCATAAGTGTGATCCTTGGTGACAGGTGGAAGAAAATGAAAAATGAA GAGAGAAGGATGTATACATTAGAAGCAAAGGCTTTGGCTGAAGAACAAAAACGTTTAAAT CCTGACTGTTGGAAACGGAAAAGAACCAATTCAGGCTCACAACAACATTAAACCAGGATG ATTATGTTCTTAAGTCTGTATTTGCATAAACATTGACTGTCAGTGGAAAGACTTAAGAAG ATCAAGGTCTCACCGTATGTCCTGAATCTGTGTGACCATAAGATACTGACAGCATTGAGT CTTGAAATGATTTAATAATAAGAGTGAGGATTTGCTTTCTCCATTAGAGCATTAAGTAAG CTAAAACTATCAACATTGTAAACCAAATTGCCTTATTTTTCTTCCAAACTTCATATATGT CTATCAGGTAATATAGGCTTGAAAATTGATATCCTGTGGTGCTAAAGTACAGTAGAAAGA AGTGTATACATGTTCTATTTTAAATTGTACAAAAGGGGAATTTAAAAATATGTAACTGCT GTTTATACATTGGCTCCTTACTGCTTATTAATCTGTATTGTACACATAACGGAATGAAGC AGAAGCCGGGAGTTGGCCTTTCCTTGAGCAGCCACCACATGGCTCAGCGTCTGTGCCAAA CACGGAGGCTCCTAGTCTGGCCAGTGCCAAGAGGGTGCCAGAACATGGGGCAGGTGAGTG GTGTCAGTGTCCCAGCCTAAGAGCCACCTGCTGCAGCCCCAGGGCCCACGGAGCAGATGC ACCCGGTGGCGGCACCCTTTCCCTACGTCGATGGAGACCTGCCCAGGCCAAGGTAAAGTT AGTTAATAGCATTGGGATATAGTCACTGTAATGGTGCTATTAACAGTTGACACCATTGTA TTTTTAACTTTGTGTCCTCTATCTCCTCAGCCACGTATCTCAATATCGTATTTGTCATCG TATCTCTATGGTGGGGGCGGACTTTGCACTTAAGCAGTGCAACACTTGCACTTTACTTTC CTCCAACTGTCTACAATGAGAGCAAACACATTGGCAATACAGCTGCTTTTGCTCTGAGCT ACAATCATGGCTTTTCATGTTACTTACCAAGTGGTGTTTCTGGTTAAGAATCACAGCTGT AAAATTGATTTCAGTTCATTACACTTCTTCATGATGTTGCCCCTAAATTTTGCACACTAT ATTCTTGTATATTATTTCAAATAAAATGAAAAAAATTGTTAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 269-1985, - strand, RNAz p=0.985917 | |
| 669-788, - strand, RNAz p=0.630179 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 269-1985, - strand, RNAz p=0.985917 | |
| 669-788, - strand, RNAz p=0.630179 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 6-119, gnl|bosTau2|chr4 (20498650-20498763) | |
| 6-119, gnl|canFam2|chr18 (16338564-16338408) | |
| 6-119, gnl|danRer3|chr23 (55354557-55354737) | |
| 6-119, gnl|dasNov1|scaffold_2558 (55627-55471) | |
| 6-119, gnl|echTel1|scaffold_294637 (5530-5694) | |
| 6-119, gnl|fr1|chrUn (61879959-61880103) | |
| 6-119, gnl|galGal2|chr1 (9140737-9140562) | |
| 6-119, gnl|hg17|chr7 (106420712-106420878) | |
| 6-119, gnl|Hg17|chr7 (106420756-106420869) | |
| 6-119, gnl|loxAfr1|scaffold_29476 (6193-6358) | |
| 6-119, gnl|mm7|chr12 (29776889-29776730) | |
| 6-119, gnl|Mm7|chr12 (29776845-29776732) | |
| 6-119, gnl|monDom2|scaffold_22 (45515699-45515541) | |
| 6-119, gnl|oryCun1|scaffold_211657 (30989-30835) | |
| 6-119, gnl|panTro1|chr6 (108330642-108330808) | |
| 6-119, gnl|rheMac2|chr3 (144608407-144608573) | |
| 6-119, gnl|rn3|chr6 (50214871-50214709) | |
| 6-119, gnl|tetNig1|chr13 (10071205-10071355) | |
| 6-119, gnl|xenTro1|scaffold_452 (263457-263628) | |
| 230-403, gnl|bosTau2|chr4 (20501061-20501234) | |
| 230-403, gnl|canFam2|chr18 (16336042-16335861) | |
| 230-403, gnl|danRer3|chr23 (55357986-55358153) | |
| 230-403, gnl|dasNov1|scaffold_2558 (50903-50722) | |
| 230-403, gnl|echTel1|scaffold_294637 (8295-8476) | |
| 230-403, gnl|fr1|chrUn (61880507-61880688) | |
| 230-403, gnl|galGal2|chr1 (9140033-9139887) | |
| 230-403, gnl|hg17|chr7 (106423670-106423851) | |
| 230-403, gnl|Hg17|chr7 (106423686-106423858) | |
| 230-403, gnl|loxAfr1|scaffold_29476 (9359-9540) | |
| 230-403, gnl|mm7|chr12 (29774024-29773843) | |
| 230-403, gnl|Mm7|chr12 (29774006-29773834) | |
| 230-403, gnl|monDom2|scaffold_22 (45514930-45514749) | |
| 230-403, gnl|oryCun1|scaffold_211657 (28824-28643) | |
| 230-403, gnl|panTro1|chr6 (108333592-108333773) | |
| 230-403, gnl|rheMac2|chr3 (144611350-144611531) | |
| 230-403, gnl|rn3|chr6 (50213924-50213743) | |
| 230-403, gnl|tetNig1|chr13 (10071865-10072032) | |
| 230-403, gnl|xenTro1|scaffold_452 (266887-267064) | |
| 550-866, gnl|bosTau2|chr4 (20507914-20508229) | |
| 550-866, gnl|canFam2|chr18 (16330226-16329966) | |
| 550-866, gnl|danRer3|chr23 (55361107-55361335) | |
| 550-866, gnl|echTel1|scaffold_295478 (14605-14834) | |
| 550-866, gnl|fr1|chrUn (61881048-61881283) | |
| 550-866, gnl|galGal2|chr1 (9136839-9136576) | |
| 550-866, gnl|hg17|chr7 (106430299-106430562) | |
| 550-866, gnl|Hg17|chr7 (106430298-106430561) | |
| 550-866, gnl|mm7|chr12 (29770163-29769891) | |
| 550-866, gnl|Mm7|chr12 (29770162-29769893) | |
| 550-866, gnl|monDom2|scaffold_22 (45507677-45507406) | |
| 550-866, gnl|oryCun1|scaffold_211657 (21066-20805) | |
| 550-866, gnl|panTro1|chr6 (108340223-108340486) | |
| 550-866, gnl|rheMac2|chr3 (144617927-144618190) | |
| 550-866, gnl|rn3|chr6 (50209995-50209731) | |
| 550-866, gnl|tetNig1|chr13 (10072392-10072614) | |
| 550-866, gnl|xenTro1|scaffold_452 (268790-269058) | |
| 1053-2080, gnl|bosTau2|chr4 (20511819-20512840) | |
| 1053-2080, gnl|Hg17|chr7 (106435869-106436916) | |
| 1053-2080, gnl|Mm7|chr12 (29766704-29765677) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-119, gnl|bosTau2|chr4 (20498650-20498763) | |
| 6-119, gnl|canFam2|chr18 (16338564-16338408) | |
| 6-119, gnl|danRer3|chr23 (55354557-55354737) | |
| 6-119, gnl|dasNov1|scaffold_2558 (55627-55471) | |
| 6-119, gnl|echTel1|scaffold_294637 (5530-5694) | |
| 6-119, gnl|fr1|chrUn (61879959-61880103) | |
| 6-119, gnl|galGal2|chr1 (9140737-9140562) | |
| 6-119, gnl|hg17|chr7 (106420712-106420878) | |
| 6-119, gnl|Hg17|chr7 (106420756-106420869) | |
| 6-119, gnl|loxAfr1|scaffold_29476 (6193-6358) | |
| 6-119, gnl|mm7|chr12 (29776889-29776730) | |
| 6-119, gnl|Mm7|chr12 (29776845-29776732) | |
| 6-119, gnl|monDom2|scaffold_22 (45515699-45515541) | |
| 6-119, gnl|oryCun1|scaffold_211657 (30989-30835) | |
| 6-119, gnl|panTro1|chr6 (108330642-108330808) | |
| 6-119, gnl|rheMac2|chr3 (144608407-144608573) | |
| 6-119, gnl|rn3|chr6 (50214871-50214709) | |
| 6-119, gnl|tetNig1|chr13 (10071205-10071355) | |
| 6-119, gnl|xenTro1|scaffold_452 (263457-263628) | |
| 230-403, gnl|bosTau2|chr4 (20501061-20501234) | |
| 230-403, gnl|canFam2|chr18 (16336042-16335861) | |
| 230-403, gnl|danRer3|chr23 (55357986-55358153) | |
| 230-403, gnl|dasNov1|scaffold_2558 (50903-50722) | |
| 230-403, gnl|echTel1|scaffold_294637 (8295-8476) | |
| 230-403, gnl|fr1|chrUn (61880507-61880688) | |
| 230-403, gnl|galGal2|chr1 (9140033-9139887) | |
| 230-403, gnl|hg17|chr7 (106423670-106423851) | |
| 230-403, gnl|Hg17|chr7 (106423686-106423858) | |
| 230-403, gnl|loxAfr1|scaffold_29476 (9359-9540) | |
| 230-403, gnl|mm7|chr12 (29774024-29773843) | |
| 230-403, gnl|Mm7|chr12 (29774006-29773834) | |
| 230-403, gnl|monDom2|scaffold_22 (45514930-45514749) | |
| 230-403, gnl|oryCun1|scaffold_211657 (28824-28643) | |
| 230-403, gnl|panTro1|chr6 (108333592-108333773) | |
| 230-403, gnl|rheMac2|chr3 (144611350-144611531) | |
| 230-403, gnl|rn3|chr6 (50213924-50213743) | |
| 230-403, gnl|tetNig1|chr13 (10071865-10072032) | |
| 230-403, gnl|xenTro1|scaffold_452 (266887-267064) | |
| 550-866, gnl|bosTau2|chr4 (20507914-20508229) | |
| 550-866, gnl|canFam2|chr18 (16330226-16329966) | |
| 550-866, gnl|danRer3|chr23 (55361107-55361335) | |
| 550-866, gnl|echTel1|scaffold_295478 (14605-14834) | |
| 550-866, gnl|fr1|chrUn (61881048-61881283) | |
| 550-866, gnl|galGal2|chr1 (9136839-9136576) | |
| 550-866, gnl|hg17|chr7 (106430299-106430562) | |
| 550-866, gnl|Hg17|chr7 (106430298-106430561) | |
| 550-866, gnl|mm7|chr12 (29770163-29769891) | |
| 550-866, gnl|Mm7|chr12 (29770162-29769893) | |
| 550-866, gnl|monDom2|scaffold_22 (45507677-45507406) | |
| 550-866, gnl|oryCun1|scaffold_211657 (21066-20805) | |
| 550-866, gnl|panTro1|chr6 (108340223-108340486) | |
| 550-866, gnl|rheMac2|chr3 (144617927-144618190) | |
| 550-866, gnl|rn3|chr6 (50209995-50209731) | |
| 550-866, gnl|tetNig1|chr13 (10072392-10072614) | |
| 550-866, gnl|xenTro1|scaffold_452 (268790-269058) | |
| 1053-2080, gnl|bosTau2|chr4 (20511819-20512840) | |
| 1053-2080, gnl|Hg17|chr7 (106435869-106436916) | |
| 1053-2080, gnl|Mm7|chr12 (29766704-29765677) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| aor (0.781097) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| tes (0.415628) | |
| elu (0.385356) | |
| bla (0.373042) | |
| sag (0.36543) | |
| sin (0.349895) | |
| mga (0.32041) | |
| cte (0.29274) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| jca (0.22792) | |
| spc (0.226732) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| sto (0.179824) | |
| gul (0.177588) | |
| duo (0.172801) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ste (0.135208) | |
| pla (0.133672) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.781097) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| tes (0.415628) | |
| elu (0.385356) | |
| bla (0.373042) | |
| sag (0.36543) | |
| sin (0.349895) | |
| mga (0.32041) | |
| cte (0.29274) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| jca (0.22792) | |
| spc (0.226732) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| sto (0.179824) | |
| gul (0.177588) | |
| duo (0.172801) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ste (0.135208) | |
| pla (0.133672) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |