Ss1.1-LyN1-MLN01B010043.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTATCTTCTTTTCTGTACTCTGAAGATAATTTGATTCAGACAGAAGGTTTTTGGGTGCT TGCTGAAATTTTGGAGATCTGGGAAAATGGGGTAATAACATGACACCAGCTTTTAAGCAG CAACATCTGCTGTGGTTCAAAGCCACACAAAGAAAGCTGCTTAAGCAGTTGAATGTTTTG GACTGCACGGACAAGTGTGGTTCAACAGCAACGACTGCAGAGCAGAGGAAATTTAAAGTC TCGAGAAGTTGTTAAAAAATGGAGTCCCGGAAGATGAGTATTTTCAAGAGACAAACATCA CCTTGTCCTCCAAGCTATGGAAGATCTTTGTCAGAACCTGCTTATGCACATTCAGAGCCT GGAACAAGCTTAAAGAGTTATCCATGGTGTGGTCCAGTGAAAAGCAAGAGGAAGAAAAAT GAACAGGCTGTTTCCAATCTAGGAAAGCCACTGGGTGCTTATCGGTGGCAGACACATCCC AGCTTTAGGTGGAAAGGGGGCAAAAGGGAACAATTGCAAAATAATAAAGGAGGCCTGGAT GAACCACAACAAGAGGTCCTGCCACAGATGGTTGGGAATAACGTTTCTTCCTCTGCTAAC GAGGTCCATGGAACATCAGTGGCGACGGAGAACCTGGTCAACACCCGGTCACTTCGGGTT CCATTCAGCAGATCTATGTCAGAACCAGAACCCCGCGGCAGTGTCAGATTTGGTAGACGG TGGCCGACTTCGGTGGGGTCAGTGGAGTCTGAGCAGCAGGGGTATTTCATCCGTGGTATT TTCTCTACTCTTTCCAATGGCTTCTCCAGGATGCTGAGTCTAAAAGGAGAATCACCCAGT GAATCAGTAAGAGAAGATGTGAAAGGGCCACCTACCCATCGTCTGTCTTGTGGCCAGTCA CCCTACACCGAGACGACAACATGGGAGCGGAAGTACTGCATCCTCACAGACAGCCAGCTG GTGTTGCTCAACAAGGAGAAGGAGATACCTGTGGAAGGAGGACAGGAGCAGCCGACAGAT TCCACCAAAGGGCGATGCCTGAGGAGAACTGTCAGTGTCCCCTCCGAGGGTCAGTTTCCT GAGTACCCACCAGAGGGCGCCGCTAAACTGGAGGTGCCAGCAGAAAGGTCCCCCCGCAGA CGGAGTATCTCAGGGACCAGTACATCAGAGAAACCCAACTCTATGGACACTGCAAATACC TCACCCTTCAAAGTACCAGGGTTCTTCAGCAAGCGCCTGAAAGGCTCCATCAAGAGGACC AAAAGCCAATCAAAGCTTGACAGAAACACGAGCTTTCGGCTTCCCTCTCTTCGCAGTGCA GATGACAGGTCTCGTGGGCTGCCCAAACTAAAAGAGTCACGTTCACATGAATCCTTGCTG AGCCCGTGCAGTGCAGTGGAATGTCTGGACCTTGGCAGAGGGGAGCCCGTATCAGTGAAG CCACTGCATAGCAGCATCCTTGGCCAAGACTTCTGCTTTGAGGTTACCTACTTAAGTGGA AGTAAATGCTTCAGCTGTAACTCGGCTTCAGAGAGGGATAAGTGGATGGAAAACCTTCGT AGGACAGTTCAACCAAATAAGGACAATTGCAGACGAGCCGAAAATGTTCTCCGTCTATGG ATTATTGAAGCCAAGGACCTTGCCCCTAAAAAGAAATATTTCTGTGAACTGTGCCTTGAT GATATCCTCTTTGCTCGAACAACCAGCAAGACCAAAGCAGATAATATTTTCTGGGGTGAA CATTTTGAGTTCTACAGCCTTCCACCTCTTCATAGCATCACAGTTCACATTTATAAAGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTATCTTCTTTTCTGTACTCTGAAGATAATTTGATTCAGACAGAAGGTTTTTGGGTGCT TGCTGAAATTTTGGAGATCTGGGAAAATGGGGTAATAACATGACACCAGCTTTTAAGCAG CAACATCTGCTGTGGTTCAAAGCCACACAAAGAAAGCTGCTTAAGCAGTTGAATGTTTTG GACTGCACGGACAAGTGTGGTTCAACAGCAACGACTGCAGAGCAGAGGAAATTTAAAGTC TCGAGAAGTTGTTAAAAAATGGAGTCCCGGAAGATGAGTATTTTCAAGAGACAAACATCA CCTTGTCCTCCAAGCTATGGAAGATCTTTGTCAGAACCTGCTTATGCACATTCAGAGCCT GGAACAAGCTTAAAGAGTTATCCATGGTGTGGTCCAGTGAAAAGCAAGAGGAAGAAAAAT GAACAGGCTGTTTCCAATCTAGGAAAGCCACTGGGTGCTTATCGGTGGCAGACACATCCC AGCTTTAGGTGGAAAGGGGGCAAAAGGGAACAATTGCAAAATAATAAAGGAGGCCTGGAT GAACCACAACAAGAGGTCCTGCCACAGATGGTTGGGAATAACGTTTCTTCCTCTGCTAAC GAGGTCCATGGAACATCAGTGGCGACGGAGAACCTGGTCAACACCCGGTCACTTCGGGTT CCATTCAGCAGATCTATGTCAGAACCAGAACCCCGCGGCAGTGTCAGATTTGGTAGACGG TGGCCGACTTCGGTGGGGTCAGTGGAGTCTGAGCAGCAGGGGTATTTCATCCGTGGTATT TTCTCTACTCTTTCCAATGGCTTCTCCAGGATGCTGAGTCTAAAAGGAGAATCACCCAGT GAATCAGTAAGAGAAGATGTGAAAGGGCCACCTACCCATCGTCTGTCTTGTGGCCAGTCA CCCTACACCGAGACGACAACATGGGAGCGGAAGTACTGCATCCTCACAGACAGCCAGCTG GTGTTGCTCAACAAGGAGAAGGAGATACCTGTGGAAGGAGGACAGGAGCAGCCGACAGAT TCCACCAAAGGGCGATGCCTGAGGAGAACTGTCAGTGTCCCCTCCGAGGGTCAGTTTCCT GAGTACCCACCAGAGGGCGCCGCTAAACTGGAGGTGCCAGCAGAAAGGTCCCCCCGCAGA CGGAGTATCTCAGGGACCAGTACATCAGAGAAACCCAACTCTATGGACACTGCAAATACC TCACCCTTCAAAGTACCAGGGTTCTTCAGCAAGCGCCTGAAAGGCTCCATCAAGAGGACC AAAAGCCAATCAAAGCTTGACAGAAACACGAGCTTTCGGCTTCCCTCTCTTCGCAGTGCA GATGACAGGTCTCGTGGGCTGCCCAAACTAAAAGAGTCACGTTCACATGAATCCTTGCTG AGCCCGTGCAGTGCAGTGGAATGTCTGGACCTTGGCAGAGGGGAGCCCGTATCAGTGAAG CCACTGCATAGCAGCATCCTTGGCCAAGACTTCTGCTTTGAGGTTACCTACTTAAGTGGA AGTAAATGCTTCAGCTGTAACTCGGCTTCAGAGAGGGATAAGTGGATGGAAAACCTTCGT AGGACAGTTCAACCAAATAAGGACAATTGCAGACGAGCCGAAAATGTTCTCCGTCTATGG ATTATTGAAGCCAAGGACCTTGCCCCTAAAAAGAAATATTTCTGTGAACTGTGCCTTGAT GATATCCTCTTTGCTCGAACAACCAGCAAGACCAAAGCAGATAATATTTTCTGGGGTGAA CATTTTGAGTTCTACAGCCTTCCACCTCTTCATAGCATCACAGTTCACATTTATAAAGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 66-264, + strand, RNAz p=0.977877 | |
| 983-1111, - strand, RNAz p=0.771556 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 66-264, + strand, RNAz p=0.977877 | |
| 983-1111, - strand, RNAz p=0.771556 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-856, gnl|bosTau2|chr29 (32970583-32969725) | |
| 1-856, gnl|Hg17|chr1 (174933798-174934672) | |
| 1-856, gnl|Mm7|chr1 (157290775-157289914) | |
| 983-1111, gnl|bosTau2|chr29 (32899386-32899258) | |
| 983-1111, gnl|Hg17|chr1 (175000782-175000910) | |
| 983-1111, gnl|Mm7|chr1 (157249456-157249331) | |
| 1326-1484, gnl|bosTau2|chr11 (73544714-73544556) | |
| 1326-1484, gnl|canFam2|chr9 (64098753-64098559) | |
| 1326-1484, gnl|danRer3|chr5 (28492902-28493059) | |
| 1326-1484, gnl|dasNov1|scaffold_132263 (6836-6642) | |
| 1326-1484, gnl|echTel1|scaffold_321539 (136433-136599) | |
| 1326-1484, gnl|fr1|chrUn (234275416-234275231) | |
| 1326-1484, gnl|galGal2|chr17 (1851502-1851336) | |
| 1326-1484, gnl|hg17|chr9 (121598839-121599033) | |
| 1326-1484, gnl|Hg17|chr9 (121598843-121599001) | |
| 1326-1484, gnl|loxAfr1|scaffold_5462 (4223-4414) | |
| 1326-1484, gnl|mm7|chr2 (35714952-35715132) | |
| 1326-1484, gnl|Mm7|chr2 (35714954-35715114) | |
| 1326-1484, gnl|monDom2|scaffold_38 (14708523-14708712) | |
| 1326-1484, gnl|oryCun1|scaffold_204926 (777-940) | |
| 1326-1484, gnl|panTro1|chr11 (106337525-106337719) | |
| 1326-1484, gnl|rheMac2|chr15 (14236858-14236664) | |
| 1326-1484, gnl|rn3|chr3 (14713849-14714029) | |
| 1326-1484, gnl|tetNig1|chrUn_random (2190837-2190664) | |
| 1326-1484, gnl|xenTro1|scaffold_721 (555242-555406) | |
| 1580-1794, gnl|bosTau2|chr11 (73542060-73541846) | |
| 1580-1794, gnl|Hg17|chr9 (121601716-121601930) | |
| 1580-1794, gnl|Mm7|chr2 (35717127-35717341) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-856, gnl|bosTau2|chr29 (32970583-32969725) | |
| 1-856, gnl|Hg17|chr1 (174933798-174934672) | |
| 1-856, gnl|Mm7|chr1 (157290775-157289914) | |
| 983-1111, gnl|bosTau2|chr29 (32899386-32899258) | |
| 983-1111, gnl|Hg17|chr1 (175000782-175000910) | |
| 983-1111, gnl|Mm7|chr1 (157249456-157249331) | |
| 1326-1484, gnl|bosTau2|chr11 (73544714-73544556) | |
| 1326-1484, gnl|canFam2|chr9 (64098753-64098559) | |
| 1326-1484, gnl|danRer3|chr5 (28492902-28493059) | |
| 1326-1484, gnl|dasNov1|scaffold_132263 (6836-6642) | |
| 1326-1484, gnl|echTel1|scaffold_321539 (136433-136599) | |
| 1326-1484, gnl|fr1|chrUn (234275416-234275231) | |
| 1326-1484, gnl|galGal2|chr17 (1851502-1851336) | |
| 1326-1484, gnl|hg17|chr9 (121598839-121599033) | |
| 1326-1484, gnl|Hg17|chr9 (121598843-121599001) | |
| 1326-1484, gnl|loxAfr1|scaffold_5462 (4223-4414) | |
| 1326-1484, gnl|mm7|chr2 (35714952-35715132) | |
| 1326-1484, gnl|Mm7|chr2 (35714954-35715114) | |
| 1326-1484, gnl|monDom2|scaffold_38 (14708523-14708712) | |
| 1326-1484, gnl|oryCun1|scaffold_204926 (777-940) | |
| 1326-1484, gnl|panTro1|chr11 (106337525-106337719) | |
| 1326-1484, gnl|rheMac2|chr15 (14236858-14236664) | |
| 1326-1484, gnl|rn3|chr3 (14713849-14714029) | |
| 1326-1484, gnl|tetNig1|chrUn_random (2190837-2190664) | |
| 1326-1484, gnl|xenTro1|scaffold_721 (555242-555406) | |
| 1580-1794, gnl|bosTau2|chr11 (73542060-73541846) | |
| 1580-1794, gnl|Hg17|chr9 (121601716-121601930) | |
| 1580-1794, gnl|Mm7|chr2 (35717127-35717341) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cut (0.169924) | |
| cki (0.165235) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| cki (0.165235) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| jej (0.0989218) |