Non-Coding RNA Search

Ss1.1-LyN1-MLN01B010092.5

Sequence:


               
               AGGCAGTGGCTACACTGGAGGCAAGCACACCCAGGTCTCACATTAAAGAAGCCAAACTGT
CTGCTTCAAAGAGAAAAGGCAACATCCTGTCGCAGGCCATGCTCTGGCAAAAACCCGCAG
CTCCAGAGCAGGCCCCGGCACCACCCCGGCCGTACCAGGGTGTGCGCGTGAAGGAGCCGG
TCAAAGAGCTGCTGCGGAGGAAACGAGGCCATGCCAGCAGCGGGGCACCTGTGGCACCAA
CCGCGGTGGTGCTGCCCCATCAGCCCCTGGCGACCTACACCACAGTGGGTCCCTCCTGCC
TCGACATGGAGGTCTCTGCTTCCACAGTGACGGAGGAGGGGGCGCTGTGCACCGGCTGGC
TCTCCCAGCCCGCCCCGGCCGCCCTCCAGCCCCTAGCCCCGTGGACGCCCTACACTGAGT
ATGTGTCCCACGAGGCTGTCAGCTGCCCCTACTCAGCTGACATGTATGTGCAGCCCGTGT
GTCCCAGCTACACGGTGGTGGGGCCCTCCTCTGTGCTGACCTACGCCTCCCAGCCGCTCA
TCACCAATGTCACGACGAGAAGCGCCGCCACACCCACAGTGGGGCCCCAGCTGGAAGGCC
CAGAGCACCAGGCACCCCTCACCTATTTCCCGTGGCCTCAGCCCCTGTCCACGCTGCCCA
CTTCCACTCTGCAGTACCAGCCTCCAGCCCCAGCCCTGCCTGGGCCGCAGTTTGTCCAGC
TCCCCATCTCCATCCCTGAGCCGGTCCTTCAGGACGTGGAAGACCCCAGGAGAACCATCA
GCTCCCTGCTTCTGGAGGAAGAGGATAGTGATACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCAGTGGCTACACTGGAGGCAAGCACACCCAGGTCTCACATTAAAGAAGCCAAACTGT
CTGCTTCAAAGAGAAAAGGCAACATCCTGTCGCAGGCCATGCTCTGGCAAAAACCCGCAG
CTCCAGAGCAGGCCCCGGCACCACCCCGGCCGTACCAGGGTGTGCGCGTGAAGGAGCCGG
TCAAAGAGCTGCTGCGGAGGAAACGAGGCCATGCCAGCAGCGGGGCACCTGTGGCACCAA
CCGCGGTGGTGCTGCCCCATCAGCCCCTGGCGACCTACACCACAGTGGGTCCCTCCTGCC
TCGACATGGAGGTCTCTGCTTCCACAGTGACGGAGGAGGGGGCGCTGTGCACCGGCTGGC
TCTCCCAGCCCGCCCCGGCCGCCCTCCAGCCCCTAGCCCCGTGGACGCCCTACACTGAGT
ATGTGTCCCACGAGGCTGTCAGCTGCCCCTACTCAGCTGACATGTATGTGCAGCCCGTGT
GTCCCAGCTACACGGTGGTGGGGCCCTCCTCTGTGCTGACCTACGCCTCCCAGCCGCTCA
TCACCAATGTCACGACGAGAAGCGCCGCCACACCCACAGTGGGGCCCCAGCTGGAAGGCC
CAGAGCACCAGGCACCCCTCACCTATTTCCCGTGGCCTCAGCCCCTGTCCACGCTGCCCA
CTTCCACTCTGCAGTACCAGCCTCCAGCCCCAGCCCTGCCTGGGCCGCAGTTTGTCCAGC
TCCCCATCTCCATCCCTGAGCCGGTCCTTCAGGACGTGGAAGACCCCAGGAGAACCATCA
GCTCCCTGCTTCTGGAGGAAGAGGATAGTGATACCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               OBF1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               OBF1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               288-526, - strand, RNAz p=0.832054
               

               
               387-506, + strand, RNAz p=0.763999

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               288-526, - strand, RNAz p=0.832054
               

               
               387-506, + strand, RNAz p=0.763999

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               115-248, gnl|bosTau2|chrX (30522018-30522151)
               

               
               115-248, gnl|Hg17|chr11 (110734853-110734720)
               

               
               115-248, gnl|Mm7|chr9 (51210814-51210947)
               


               
               288-554, gnl|bosTau2|chrX (30522773-30523039)
               

               
               288-554, gnl|canFam2|chr5 (24699733-24699424)
               

               
               288-554, gnl|galGal2|chr24 (4194663-4194972)
               

               
               288-554, gnl|hg17|chr11 (110733362-110733671)
               

               
               288-554, gnl|Hg17|chr11 (110733646-110733380)
               

               
               288-554, gnl|loxAfr1|scaffold_24714 (26895-26602)
               

               
               288-554, gnl|mm7|chr9 (51211845-51211536)
               

               
               288-554, gnl|Mm7|chr9 (51211559-51211825)
               

               
               288-554, gnl|monDom2|scaffold_2 (130689196-130688906)
               

               
               288-554, gnl|oryCun1|scaffold_203330 (15342-15648)
               

               
               288-554, gnl|panTro1|chr9 (112714774-112715083)
               

               
               288-554, gnl|rheMac2|chr14 (109819709-109820018)
               

               
               288-554, gnl|rn3|chr8 (54573703-54573394)
               

               
               288-554, gnl|xenTro1|scaffold_18 (3036714-3037015)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-248, gnl|bosTau2|chrX (30522018-30522151)
               

               
               115-248, gnl|Hg17|chr11 (110734853-110734720)
               

               
               115-248, gnl|Mm7|chr9 (51210814-51210947)
               


               
               288-554, gnl|bosTau2|chrX (30522773-30523039)
               

               
               288-554, gnl|canFam2|chr5 (24699733-24699424)
               

               
               288-554, gnl|galGal2|chr24 (4194663-4194972)
               

               
               288-554, gnl|hg17|chr11 (110733362-110733671)
               

               
               288-554, gnl|Hg17|chr11 (110733646-110733380)
               

               
               288-554, gnl|loxAfr1|scaffold_24714 (26895-26602)
               

               
               288-554, gnl|mm7|chr9 (51211845-51211536)
               

               
               288-554, gnl|Mm7|chr9 (51211559-51211825)
               

               
               288-554, gnl|monDom2|scaffold_2 (130689196-130688906)
               

               
               288-554, gnl|oryCun1|scaffold_203330 (15342-15648)
               

               
               288-554, gnl|panTro1|chr9 (112714774-112715083)
               

               
               288-554, gnl|rheMac2|chr14 (109819709-109820018)
               

               
               288-554, gnl|rn3|chr8 (54573703-54573394)
               

               
               288-554, gnl|xenTro1|scaffold_18 (3036714-3037015)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               lnt (0.426925)
               

               
               csp (0.322373)
               

               
               med (0.232504)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.426925)
               

               
               csp (0.322373)
               

               
               med (0.232504)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               cly (0.120642)

	288-526, - strand, RNAz p=0.832054
	387-506, + strand, RNAz p=0.763999

	115-248, gnl\|bosTau2\|chrX (30522018-30522151)
	115-248, gnl\|Hg17\|chr11 (110734853-110734720)
	115-248, gnl\|Mm7\|chr9 (51210814-51210947)

	288-554, gnl\|bosTau2\|chrX (30522773-30523039)
	288-554, gnl\|canFam2\|chr5 (24699733-24699424)
	288-554, gnl\|galGal2\|chr24 (4194663-4194972)
	288-554, gnl\|hg17\|chr11 (110733362-110733671)
	288-554, gnl\|Hg17\|chr11 (110733646-110733380)
	288-554, gnl\|loxAfr1\|scaffold_24714 (26895-26602)
	288-554, gnl\|mm7\|chr9 (51211845-51211536)
	288-554, gnl\|Mm7\|chr9 (51211559-51211825)
	288-554, gnl\|monDom2\|scaffold_2 (130689196-130688906)
	288-554, gnl\|oryCun1\|scaffold_203330 (15342-15648)
	288-554, gnl\|panTro1\|chr9 (112714774-112715083)
	288-554, gnl\|rheMac2\|chr14 (109819709-109820018)
	288-554, gnl\|rn3\|chr8 (54573703-54573394)
	288-554, gnl\|xenTro1\|scaffold_18 (3036714-3037015)

	lnt (0.426925)
	csp (0.322373)
	med (0.232504)
	ill (0.175593)
	duo (0.172801)
	cag (0.151194)
	cly (0.120642)