Non-Coding RNA Search

Ss1.1-LyN1-MLN01B020062.5

Sequence:


               
               AGTGCGGTGGTGAGAGAGGTATCGGCAGGAGCAGCTCTGAAGCCGGGGTCTGAGGCTGAC
CCGTCCGACTTTCCGTCTGTGTTGAGCCCACTCGAGCCGCAGCCATGTCCGGGGACGAGG
TGAGGGCCTGAGGCTGGCGCTAGGGCTAAGGACCGAGGCAGGGAGCCAAACTCACCCCAG
TGTGGGAGACCGGGCCTGCGGCCTAGCGACCGGCCGCCGCCATGTGGGGCTGCCGGGCCT
AGGCGACCCTGAGCGGTAGAGCCGGTTAGAGCCCCGGAGCCGCGGCTTGGCTTAGCCCCG
CTCTCGTCAGGGCGGCGGCGCTGAGGCCGGCGTTTCCGGATTGGAGAGCACGTTGAGTCG
CTCTCCAGAAGAGGGCTTGAATGTTGGGTTAATGCCCCAGCTGAACGAGACTGGGACTGG
CAGCCCCAGCATTTCTTTCGGTTTGACGCTTCAGCTCCAGCTCTCCCTCGCTGGGCGCTG
GTGGTGCCGAGAGGAACGTCTCGGAGCGTCTTCGTTTAAAACTTTGCAGCCTGGCTTGTC
CTACCCCTCATCCACTCCTTTTCTCATCTAGAGCGTTATTAATAACTTTTCTTTTTAAAG
ACCGGGAAGCGAGGGAGATAGGAAAAGATCTTTCAGCCTGAAAAAGTGATTAACCTCGGA
AAGTTTTAGGGCCTGAGTCCCTGAGCCTTTCTCAGCAGAGCTCACTGCGACGTCAGCGGG
AAGTTCGGGCTCCGAAGCTGCCTGGATCTTTTTCTACTATCGTCCTTGGTACTCAGCACA
TTTCCTCAAATCCCTTTTGGCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCGGTGGTGAGAGAGGTATCGGCAGGAGCAGCTCTGAAGCCGGGGTCTGAGGCTGAC
CCGTCCGACTTTCCGTCTGTGTTGAGCCCACTCGAGCCGCAGCCATGTCCGGGGACGAGG
TGAGGGCCTGAGGCTGGCGCTAGGGCTAAGGACCGAGGCAGGGAGCCAAACTCACCCCAG
TGTGGGAGACCGGGCCTGCGGCCTAGCGACCGGCCGCCGCCATGTGGGGCTGCCGGGCCT
AGGCGACCCTGAGCGGTAGAGCCGGTTAGAGCCCCGGAGCCGCGGCTTGGCTTAGCCCCG
CTCTCGTCAGGGCGGCGGCGCTGAGGCCGGCGTTTCCGGATTGGAGAGCACGTTGAGTCG
CTCTCCAGAAGAGGGCTTGAATGTTGGGTTAATGCCCCAGCTGAACGAGACTGGGACTGG
CAGCCCCAGCATTTCTTTCGGTTTGACGCTTCAGCTCCAGCTCTCCCTCGCTGGGCGCTG
GTGGTGCCGAGAGGAACGTCTCGGAGCGTCTTCGTTTAAAACTTTGCAGCCTGGCTTGTC
CTACCCCTCATCCACTCCTTTTCTCATCTAGAGCGTTATTAATAACTTTTCTTTTTAAAG
ACCGGGAAGCGAGGGAGATAGGAAAAGATCTTTCAGCCTGAAAAAGTGATTAACCTCGGA
AAGTTTTAGGGCCTGAGTCCCTGAGCCTTTCTCAGCAGAGCTCACTGCGACGTCAGCGGG
AAGTTCGGGCTCCGAAGCTGCCTGGATCTTTTTCTACTATCGTCCTTGGTACTCAGCACA
TTTCCTCAAATCCCTTTTGGCTAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-239, - strand, RNAz p=0.535928
               

               
               342-458, - strand, RNAz p=0.528179

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.535928
               

               
               342-458, - strand, RNAz p=0.528179

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               207-324, + strand, RNAmicro p=0.951134

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               207-324, + strand, RNAmicro p=0.951134

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-798, gnl|bosTau2|chr13 (47886022-47886851)
               

               
               1-798, gnl|Hg17|chr20 (32163681-32162848)
               

               
               1-798, gnl|Mm7|chr2 (154633666-154632849)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-798, gnl|bosTau2|chr13 (47886022-47886851)
               

               
               1-798, gnl|Hg17|chr20 (32163681-32162848)
               

               
               1-798, gnl|Mm7|chr2 (154633666-154632849)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	120-239, - strand, RNAz p=0.535928
	342-458, - strand, RNAz p=0.528179

	1-798, gnl\|bosTau2\|chr13 (47886022-47886851)
	1-798, gnl\|Hg17\|chr20 (32163681-32162848)
	1-798, gnl\|Mm7\|chr2 (154633666-154632849)