Non-Coding RNA Search

Ss1.1-LyN1-MLN01B030008.5

Sequence:


               
               TTTGAGTGGGACTTGCCTGCTCCCCTCACACACTGTCCTCTCCTGTTCTCCAGCATGTTG
CATCTGTGTTTCTCCAGAGGCTTCTGGATGGCAGCTCTGACCATGATGCTGGTGGTGCTG
AGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGTTTCTGGGGAAGGCT
GAGTGTCATTTCTTCAACGGGACGGAGCGGGTGCGGTTGCTGGACAGATACTTCTATAAC
GGAGATGAGTACGTGCGCTTCGACAGCGACGTGGGCGAGTTCCGGGAAGTGACCGAATTT
GGGCGGCCTTCAGCCAAGTACTGGAACAGCCAGAAGGACTTCATGGAGCAGAAGCGGGCG
GAGGTGGACACGGTGTGCAGACACAACTACGAGATCTCAGAGACCTTCCTCGTGCCGCGG
CGAGCTGAGCCCAGAGTGACGGTGTACCCTGCAAAGACCCAGCCCCTGCAGCACCACAAC
CTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCATGTGGAGGTCAGGTGGTTCCGG
AATGGCCAGGAAGAAGTGGCGGGGGTGGTCTCCACAGGCCTGATCCCTAATGGAGACTGG
ACCTTCCAGACCATGGTGATGCTTGAAACGGTTCCTCAGAGTGGAGAGGTCTACACCTGC
CGAGTGGAGCACCCCAGCCTGACGAGCCCCGTCACAGTGGAATGGAGGGCACGGTCTGAA
TCTGCTCAGGGCAAGATGATGAGTGGGATCGGGGGCTTCGTCCTGGGTCTGCTCTTTGTT
GCTGTGGGGCTGTTCATCTACTTCCAGAATCAGAAAGGACGCCCTGCCCTTCAGCCAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAGTGGGACTTGCCTGCTCCCCTCACACACTGTCCTCTCCTGTTCTCCAGCATGTTG
CATCTGTGTTTCTCCAGAGGCTTCTGGATGGCAGCTCTGACCATGATGCTGGTGGTGCTG
AGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGTTTCTGGGGAAGGCT
GAGTGTCATTTCTTCAACGGGACGGAGCGGGTGCGGTTGCTGGACAGATACTTCTATAAC
GGAGATGAGTACGTGCGCTTCGACAGCGACGTGGGCGAGTTCCGGGAAGTGACCGAATTT
GGGCGGCCTTCAGCCAAGTACTGGAACAGCCAGAAGGACTTCATGGAGCAGAAGCGGGCG
GAGGTGGACACGGTGTGCAGACACAACTACGAGATCTCAGAGACCTTCCTCGTGCCGCGG
CGAGCTGAGCCCAGAGTGACGGTGTACCCTGCAAAGACCCAGCCCCTGCAGCACCACAAC
CTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCATGTGGAGGTCAGGTGGTTCCGG
AATGGCCAGGAAGAAGTGGCGGGGGTGGTCTCCACAGGCCTGATCCCTAATGGAGACTGG
ACCTTCCAGACCATGGTGATGCTTGAAACGGTTCCTCAGAGTGGAGAGGTCTACACCTGC
CGAGTGGAGCACCCCAGCCTGACGAGCCCCGTCACAGTGGAATGGAGGGCACGGTCTGAA
TCTGCTCAGGGCAAGATGATGAGTGGGATCGGGGGCTTCGTCCTGGGTCTGCTCTTTGTT
GCTGTGGGGCTGTTCATCTACTTCCAGAATCAGAAAGGACGCCCTGCCCTTCAGCCAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6Y1I7_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6Y1I7_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               506-625, + strand, RNAz p=0.57125

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-625, + strand, RNAz p=0.57125

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-154, gnl|bosTau2|chr23 (21236056-21236209)
               

               
               1-154, gnl|canFam2|chr12 (5254003-5254141)
               

               
               1-154, gnl|dasNov1|scaffold_23750 (14255-14386)
               

               
               1-154, gnl|echTel1|scaffold_103957 (609-463)
               

               
               1-154, gnl|hg17|chr6 (32665390-32665536)
               

               
               1-154, gnl|Hg17|chr6 (32665551-32665398)
               

               
               1-154, gnl|loxAfr1|scaffold_36898 (7532-7395)
               

               
               1-154, gnl|mm7|chr17 (32383382-32383244)
               

               
               1-154, gnl|Mm7|chr17 (32383234-32383372)
               

               
               1-154, gnl|monDom2|scaffold_42 (16267144-16266995)
               

               
               1-154, gnl|oryCun1|scaffold_173411 (15197-15065)
               

               
               1-154, gnl|panTro1|chr5 (33118451-33118597)
               

               
               1-154, gnl|rheMac2|chr4 (32322304-32322450)
               

               
               1-154, gnl|rn3|chr20 (4681120-4681258)
               


               
               427-723, gnl|bosTau2|chr23 (21244789-21245086)
               

               
               427-723, gnl|Hg17|chr6 (32657591-32657293)
               

               
               427-723, gnl|Mm7|chr17 (32391497-32391797)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr23 (21236056-21236209)
               

               
               1-154, gnl|canFam2|chr12 (5254003-5254141)
               

               
               1-154, gnl|dasNov1|scaffold_23750 (14255-14386)
               

               
               1-154, gnl|echTel1|scaffold_103957 (609-463)
               

               
               1-154, gnl|hg17|chr6 (32665390-32665536)
               

               
               1-154, gnl|Hg17|chr6 (32665551-32665398)
               

               
               1-154, gnl|loxAfr1|scaffold_36898 (7532-7395)
               

               
               1-154, gnl|mm7|chr17 (32383382-32383244)
               

               
               1-154, gnl|Mm7|chr17 (32383234-32383372)
               

               
               1-154, gnl|monDom2|scaffold_42 (16267144-16266995)
               

               
               1-154, gnl|oryCun1|scaffold_173411 (15197-15065)
               

               
               1-154, gnl|panTro1|chr5 (33118451-33118597)
               

               
               1-154, gnl|rheMac2|chr4 (32322304-32322450)
               

               
               1-154, gnl|rn3|chr20 (4681120-4681258)
               


               
               427-723, gnl|bosTau2|chr23 (21244789-21245086)
               

               
               427-723, gnl|Hg17|chr6 (32657591-32657293)
               

               
               427-723, gnl|Mm7|chr17 (32391497-32391797)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cly (0.361925)
               

               
               nlu (0.191681)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.361925)
               

               
               nlu (0.191681)

	1-154, gnl\|bosTau2\|chr23 (21236056-21236209)
	1-154, gnl\|canFam2\|chr12 (5254003-5254141)
	1-154, gnl\|dasNov1\|scaffold_23750 (14255-14386)
	1-154, gnl\|echTel1\|scaffold_103957 (609-463)
	1-154, gnl\|hg17\|chr6 (32665390-32665536)
	1-154, gnl\|Hg17\|chr6 (32665551-32665398)
	1-154, gnl\|loxAfr1\|scaffold_36898 (7532-7395)
	1-154, gnl\|mm7\|chr17 (32383382-32383244)
	1-154, gnl\|Mm7\|chr17 (32383234-32383372)
	1-154, gnl\|monDom2\|scaffold_42 (16267144-16266995)
	1-154, gnl\|oryCun1\|scaffold_173411 (15197-15065)
	1-154, gnl\|panTro1\|chr5 (33118451-33118597)
	1-154, gnl\|rheMac2\|chr4 (32322304-32322450)
	1-154, gnl\|rn3\|chr20 (4681120-4681258)

	427-723, gnl\|bosTau2\|chr23 (21244789-21245086)
	427-723, gnl\|Hg17\|chr6 (32657591-32657293)
	427-723, gnl\|Mm7\|chr17 (32391497-32391797)