Non-Coding RNA Search

Ss1.1-LyN1-MLN01B030076.5

Sequence:


               
               GGGAGAGTCAGAAGCACATCCGGTGTTAGAGGAGCTGTGTGAGCTCTTGAGAAGCGGGTT
AGAAGAGTGGAGGCTGTGTCCCACAGACGCTAGCATCATGAATATATTTGATCGGAAGAT
CAACTTTGATGCCCTCTTAAAGTTTTCCCACATAACCCCCTCGACACAGCAGCACCTGAA
GAAGGTCTATGCCAGTTTTGCCCTTTGTATGTTTGTGGCGGCTGCGGGGGCCTATGTCCA
TGTGGTCACCCGTTTCATTCAGGCTGGCCTGCTGTCTGCCTTGGGCTCCCTGGGGTTGAT
GATTTGGCTGATGGCAACACCTCATAGCCATGAAACTGAGCAAAAAAGACTGGGACTTCT
TGCTGGATTTGCTTTCCTTACAGGAGTTGGCCTCGGCCCTGCACTGGACTTGTGCATTGC
CATTAACCCCAGCATCCTTCCCACCGCCTTCATGGGCACGGCAATGATCTTCACCTGCTT
CACCCTGAGCGCGCTCTATGCCAGGCGCCGTAGCTACCTCTTTCTGGGAGGTATCTTGAT
GTCAGCCATGAGCCTGATGGTCTTGTCTTCCCTGGGGAACCTTTTCTTTGGATCCATTTG
GCTTTTCCAGGCAAACCTGTATGTGGGGCTGGTGGTCATGTGTGGCTTTGTCCTGTTTGA
TACTCAACTCATTATTGAAAAGGCTGAAAATGGAGATAAAGATTATATCTGGCACTGTGT
TGACCTCTTCTTAGACTTTGTTACTCTCTTCAGAAAACTCATGATGATTCTGGCTATGAA
TGAGAAGGACAAGAAGAAAGAGAAGAAGTGAATTGACCATCCAGCCTTCCCCAGTTTGAC
CTCCTCTCCCTCCGCCCCTCATTTCCTCTTTGCACACATTACAGGTGGCGTGTTCTGTGA
TAATGAAAAGCATCAGAAAAGCTTTTGTACTTTGTGGTTTTCTCTATTTTGACTTTTTTG
ATCAAAAAACTGATTAGCAGACTATAGTTTGGAGTTTGGCTTCGTGTTCCTGGGGTTCGT
CCCCGCTCCCTTTTCTGTCAGCCCCATGCCTAGTGTCTTCCTCTGCTCAGGCAGCCAGCC
CACCGAGGTGAGGAACGGGATCTGCAGAGGAAGCAAACGCCAGGAGTCCGTTTTTCCACC
GAGCTTCATCAAGTGGACTTAAACCGTTTGGTAGAGCCGCCGCGGCCCTTCCTTCCTCAG
CATTGTTTGGTTTGTGCGCAGTTCCTGTGGGACTAGGCAGTGTGGGTTCCCTGGGAAAGA
AGTTTGCTGATCCCATTGTTAACTCAGGCTCGTGATATCTGAGCTGTCAACCCCTACAAG
GAAAATGAAAAGCCTCTTCCCATGGATGCTTTGCTTCCTCTGAGCTGCCGGAGTTGCTGC
TGGTCTGGCAAAGACACCTTTCTGCCCTGCTGTCACAAAAGGAGTGTGGATTGTGTGTTC
CCTTCCCGTCCCTTGTCTCACCCGCAGGGAACCTGCCTGCTTTACATTTGTGGGGTGGGA
GGATTTCAGCACAAAGGGAAGACTAATTCTTGTCAGGCATTTATGAAGGCTGATTATGTA
TGGCAAGATATATTGTAGAATTCCCAAATTCCCCTGGTTTTTTTTTTTTCATTGATTATC
ACCTTAGTTACTGAGTGGCCTCTACCAGGCGGCTATGATTAAGGGTCCCTGGAGAGGAAG
GACAGAGCAGGGGATTGGCTGAGTCTCTAGGGTAATTATAACAAATCCTGCCAGACAAAC
CAAGATAAGGACCTGTTTGGGGCAGAGGAGAACAAAATCTCTGCTGAGTGGATCTTTGTT
CAGACCAGTGGGATGGGCTGTGATGACTGGGGAAGCAGCATTCAAAAGTCCTTGGGTGTA
TTTTTGTCTTATCCCATCTGGGCACTAATAGTGTCAGGCCCGAGACTTGGGGCAGTAGAT
AGATGTCTGTTTATAGATGCACTTTAGTTTTTGGTCTGTTCACCTGTTCTCTAGGAATCC
GCAGGCTTCTTCAGGCAGGGGCCAGGTGACCCAACCTGCAAGACTTCTGATTTTCTACAG
CTTTGTGTTTGCAAGGAAGCCGCGGGGTGGGGGGTGGGGCAGTGCTAATGGGAATCCCCA
GTCCTTCCCTGTGAGCTGCCACTGTTGCAAGCATAGAAGAGCCAGGCACAGAAGAGCGAG
CAGCCTCAGGAGCGCTTGTGGCTCTGGCTTCTTGCAGGGCTTCAGCATAAGGGGGACTGA
GCCATGGGAATTTTCATTGCTTCACCATTTTTGGCTTTCCCTGTTCACAACCAGTACACA
AAACAGTTGGACCCATTGGCTTCTGGTTCACAGCTAACCACATCACTGTGCCACCCCATG
AAATAGTTCGGGTCCCAGGCGACGTGGCTTCCTGGAGGGGCTTGCCACCCCGAATGGCTC
ACTTCTGCAGAGGATGCTGCCCTTTGATTGAGCTGCTCTCTCCAGCCTGTGGCTTGAGAA
TTTACTAAAAGGGATTTCCTTCCCAGTCAACCCCCAGTAGCAACTCTCCATAAAGTTGTC
AATTCTCTGCTAGGCCTGAGAATCTGAGTTACATCTCTTGAAGCCAAACTCCACATCTTG
TGCTTTTTTTTTGCTTGGGATAAAGGAGTTTTTCTTTAGAAACAGTGCCAAGAATGACAA
GATATTAAAAAAAAAAAAACTACTTTTAAAGAAAATGCCTAACAGGTTTTTAATACAGTA
ATCACTGTAATTATTACTTTCTTTTCTAGTTCCTTGGTTTTCAGCTCAGGCTGCATTCTC
TAACTCATACTGTGAAGACAAAGGTGTTTTTGATTCAGAAATATATGAAATCTACATAGT
CTTAATTTGTAAAAAATAAAGAAAATTCCTTAACCTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGAGTCAGAAGCACATCCGGTGTTAGAGGAGCTGTGTGAGCTCTTGAGAAGCGGGTT
AGAAGAGTGGAGGCTGTGTCCCACAGACGCTAGCATCATGAATATATTTGATCGGAAGAT
CAACTTTGATGCCCTCTTAAAGTTTTCCCACATAACCCCCTCGACACAGCAGCACCTGAA
GAAGGTCTATGCCAGTTTTGCCCTTTGTATGTTTGTGGCGGCTGCGGGGGCCTATGTCCA
TGTGGTCACCCGTTTCATTCAGGCTGGCCTGCTGTCTGCCTTGGGCTCCCTGGGGTTGAT
GATTTGGCTGATGGCAACACCTCATAGCCATGAAACTGAGCAAAAAAGACTGGGACTTCT
TGCTGGATTTGCTTTCCTTACAGGAGTTGGCCTCGGCCCTGCACTGGACTTGTGCATTGC
CATTAACCCCAGCATCCTTCCCACCGCCTTCATGGGCACGGCAATGATCTTCACCTGCTT
CACCCTGAGCGCGCTCTATGCCAGGCGCCGTAGCTACCTCTTTCTGGGAGGTATCTTGAT
GTCAGCCATGAGCCTGATGGTCTTGTCTTCCCTGGGGAACCTTTTCTTTGGATCCATTTG
GCTTTTCCAGGCAAACCTGTATGTGGGGCTGGTGGTCATGTGTGGCTTTGTCCTGTTTGA
TACTCAACTCATTATTGAAAAGGCTGAAAATGGAGATAAAGATTATATCTGGCACTGTGT
TGACCTCTTCTTAGACTTTGTTACTCTCTTCAGAAAACTCATGATGATTCTGGCTATGAA
TGAGAAGGACAAGAAGAAAGAGAAGAAGTGAATTGACCATCCAGCCTTCCCCAGTTTGAC
CTCCTCTCCCTCCGCCCCTCATTTCCTCTTTGCACACATTACAGGTGGCGTGTTCTGTGA
TAATGAAAAGCATCAGAAAAGCTTTTGTACTTTGTGGTTTTCTCTATTTTGACTTTTTTG
ATCAAAAAACTGATTAGCAGACTATAGTTTGGAGTTTGGCTTCGTGTTCCTGGGGTTCGT
CCCCGCTCCCTTTTCTGTCAGCCCCATGCCTAGTGTCTTCCTCTGCTCAGGCAGCCAGCC
CACCGAGGTGAGGAACGGGATCTGCAGAGGAAGCAAACGCCAGGAGTCCGTTTTTCCACC
GAGCTTCATCAAGTGGACTTAAACCGTTTGGTAGAGCCGCCGCGGCCCTTCCTTCCTCAG
CATTGTTTGGTTTGTGCGCAGTTCCTGTGGGACTAGGCAGTGTGGGTTCCCTGGGAAAGA
AGTTTGCTGATCCCATTGTTAACTCAGGCTCGTGATATCTGAGCTGTCAACCCCTACAAG
GAAAATGAAAAGCCTCTTCCCATGGATGCTTTGCTTCCTCTGAGCTGCCGGAGTTGCTGC
TGGTCTGGCAAAGACACCTTTCTGCCCTGCTGTCACAAAAGGAGTGTGGATTGTGTGTTC
CCTTCCCGTCCCTTGTCTCACCCGCAGGGAACCTGCCTGCTTTACATTTGTGGGGTGGGA
GGATTTCAGCACAAAGGGAAGACTAATTCTTGTCAGGCATTTATGAAGGCTGATTATGTA
TGGCAAGATATATTGTAGAATTCCCAAATTCCCCTGGTTTTTTTTTTTTCATTGATTATC
ACCTTAGTTACTGAGTGGCCTCTACCAGGCGGCTATGATTAAGGGTCCCTGGAGAGGAAG
GACAGAGCAGGGGATTGGCTGAGTCTCTAGGGTAATTATAACAAATCCTGCCAGACAAAC
CAAGATAAGGACCTGTTTGGGGCAGAGGAGAACAAAATCTCTGCTGAGTGGATCTTTGTT
CAGACCAGTGGGATGGGCTGTGATGACTGGGGAAGCAGCATTCAAAAGTCCTTGGGTGTA
TTTTTGTCTTATCCCATCTGGGCACTAATAGTGTCAGGCCCGAGACTTGGGGCAGTAGAT
AGATGTCTGTTTATAGATGCACTTTAGTTTTTGGTCTGTTCACCTGTTCTCTAGGAATCC
GCAGGCTTCTTCAGGCAGGGGCCAGGTGACCCAACCTGCAAGACTTCTGATTTTCTACAG
CTTTGTGTTTGCAAGGAAGCCGCGGGGTGGGGGGTGGGGCAGTGCTAATGGGAATCCCCA
GTCCTTCCCTGTGAGCTGCCACTGTTGCAAGCATAGAAGAGCCAGGCACAGAAGAGCGAG
CAGCCTCAGGAGCGCTTGTGGCTCTGGCTTCTTGCAGGGCTTCAGCATAAGGGGGACTGA
GCCATGGGAATTTTCATTGCTTCACCATTTTTGGCTTTCCCTGTTCACAACCAGTACACA
AAACAGTTGGACCCATTGGCTTCTGGTTCACAGCTAACCACATCACTGTGCCACCCCATG
AAATAGTTCGGGTCCCAGGCGACGTGGCTTCCTGGAGGGGCTTGCCACCCCGAATGGCTC
ACTTCTGCAGAGGATGCTGCCCTTTGATTGAGCTGCTCTCTCCAGCCTGTGGCTTGAGAA
TTTACTAAAAGGGATTTCCTTCCCAGTCAACCCCCAGTAGCAACTCTCCATAAAGTTGTC
AATTCTCTGCTAGGCCTGAGAATCTGAGTTACATCTCTTGAAGCCAAACTCCACATCTTG
TGCTTTTTTTTTGCTTGGGATAAAGGAGTTTTTCTTTAGAAACAGTGCCAAGAATGACAA
GATATTAAAAAAAAAAAAACTACTTTTAAAGAAAATGCCTAACAGGTTTTTAATACAGTA
ATCACTGTAATTATTACTTTCTTTTCTAGTTCCTTGGTTTTCAGCTCAGGCTGCATTCTC
TAACTCATACTGTGAAGACAAAGGTGTTTTTGATTCAGAAATATATGAAATCTACATAGT
CTTAATTTGTAAAAAATAAAGAAAATTCCTTAACCTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               BI1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               BI1_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               174-280, - strand, RNAz p=0.518268

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               174-280, - strand, RNAz p=0.518268

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               90-920, gnl|bosTau2|chr19 (33598185-33597360)
               

               
               90-920, gnl|Hg17|chr12 (48432536-48443055)
               

               
               90-920, gnl|Mm7|chr15 (99386852-99393855)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-920, gnl|bosTau2|chr19 (33598185-33597360)
               

               
               90-920, gnl|Hg17|chr12 (48432536-48443055)
               

               
               90-920, gnl|Mm7|chr15 (99386852-99393855)

Expressed library(ies): 85 entry(ies)

More info

Expressed library(ies): 85 entry(ies)

Help | Less info


               
               jej (1.87951)
               

               
               cli (1.83374)
               

               
               cki (1.81758)
               

               
               amn (1.67084)
               

               
               cly (1.56834)
               

               
               nlu (1.53345)
               

               
               fce (1.35796)
               

               
               cty (1.14488)
               

               
               pty (1.14172)
               

               
               bla (1.11912)
               

               
               cag (1.05836)
               

               
               ssp (0.948638)
               

               
               nmm (0.929615)
               

               
               eje (0.889504)
               

               
               sin (0.874738)
               

               
               duo (0.864006)
               

               
               spl (0.859107)
               

               
               fhi (0.847889)
               

               
               clu (0.837521)
               

               
               nje (0.8296)
               

               
               nco (0.808669)
               

               
               csp (0.805932)
               

               
               cov (0.792917)
               

               
               fcc (0.791139)
               

               
               lun (0.752445)
               

               
               cmu (0.745573)
               

               
               fat (0.737137)
               

               
               ill (0.702371)
               

               
               cut (0.679694)
               

               
               pla (0.66836)
               

               
               sme (0.610874)
               

               
               col (0.585023)
               

               
               ecc (0.575175)
               

               
               ste (0.540833)
               

               
               lyg (0.532411)
               

               
               ute (0.531138)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               eye (0.511509)
               

               
               nbm (0.496623)
               

               
               cje (0.495704)
               

               
               med (0.465008)
               

               
               jca (0.45584)
               

               
               spc (0.453463)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               csk (0.422238)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               mcp (0.341297)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               eli (0.303628)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

Expressed library(ies): 85 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (1.87951)
               

               
               cli (1.83374)
               

               
               cki (1.81758)
               

               
               amn (1.67084)
               

               
               cly (1.56834)
               

               
               nlu (1.53345)
               

               
               fce (1.35796)
               

               
               cty (1.14488)
               

               
               pty (1.14172)
               

               
               bla (1.11912)
               

               
               cag (1.05836)
               

               
               ssp (0.948638)
               

               
               nmm (0.929615)
               

               
               eje (0.889504)
               

               
               sin (0.874738)
               

               
               duo (0.864006)
               

               
               spl (0.859107)
               

               
               fhi (0.847889)
               

               
               clu (0.837521)
               

               
               nje (0.8296)
               

               
               nco (0.808669)
               

               
               csp (0.805932)
               

               
               cov (0.792917)
               

               
               fcc (0.791139)
               

               
               lun (0.752445)
               

               
               cmu (0.745573)
               

               
               fat (0.737137)
               

               
               ill (0.702371)
               

               
               cut (0.679694)
               

               
               pla (0.66836)
               

               
               sme (0.610874)
               

               
               col (0.585023)
               

               
               ecc (0.575175)
               

               
               ste (0.540833)
               

               
               lyg (0.532411)
               

               
               ute (0.531138)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               eye (0.511509)
               

               
               nbm (0.496623)
               

               
               cje (0.495704)
               

               
               med (0.465008)
               

               
               jca (0.45584)
               

               
               spc (0.453463)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               csk (0.422238)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               nep (0.36785)
               

               
               ebs (0.354904)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               mcp (0.341297)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               eli (0.303628)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

	90-920, gnl\|bosTau2\|chr19 (33598185-33597360)
	90-920, gnl\|Hg17\|chr12 (48432536-48443055)
	90-920, gnl\|Mm7\|chr15 (99386852-99393855)

	jej (1.87951)
	cli (1.83374)
	cki (1.81758)
	amn (1.67084)
	cly (1.56834)
	nlu (1.53345)
	fce (1.35796)
	cty (1.14488)
	pty (1.14172)
	bla (1.11912)
	cag (1.05836)
	ssp (0.948638)
	nmm (0.929615)
	eje (0.889504)
	sin (0.874738)
	duo (0.864006)
	spl (0.859107)
	fhi (0.847889)
	clu (0.837521)
	nje (0.8296)
	nco (0.808669)
	csp (0.805932)
	cov (0.792917)
	fcc (0.791139)
	lun (0.752445)
	cmu (0.745573)
	fat (0.737137)
	ill (0.702371)
	cut (0.679694)
	pla (0.66836)
	sme (0.610874)
	col (0.585023)
	ecc (0.575175)
	ste (0.540833)
	lyg (0.532411)
	ute (0.531138)
	ova (0.516529)
	pro (0.512033)
	eye (0.511509)
	nbm (0.496623)
	cje (0.495704)
	med (0.465008)
	jca (0.45584)
	spc (0.453463)
	liv (0.438853)
	lin (0.436808)
	nms (0.427716)
	lnt (0.426925)
	csk (0.422238)
	mas (0.42061)
	hea (0.408998)
	kid (0.389206)
	sug (0.381874)
	nep (0.36785)
	ebs (0.354904)
	ton (0.351)
	fbs (0.350693)
	mcp (0.341297)
	mga (0.32041)
	fco (0.314416)
	eli (0.303628)
	cte (0.29274)
	hyp (0.285673)
	cst (0.280073)
	nca (0.273748)
	ese (0.253004)
	eep (0.245128)
	eru (0.240096)
	ece (0.229305)
	tes (0.207814)
	fli (0.202881)
	ldo (0.194005)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	rec (0.17307)
	tbr (0.154178)
	isp (0.150376)
	hlv (0.139256)
	ret (0.128733)
	thg (0.126791)
	tra (0.123092)
	pgl (0.118483)
	cbl (0.114797)