Ss1.1-LyN1-MLN01B040002.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTCTGGAGCTGGACCGTATGGACTCCTGGGATTTCGGAGTGGGGATGGCTGTGACTGGG TGTTCCTCCCGGGGTGATGGGAATGCCGATCTCGTACTTGCTGCCGATGCTACGCCTTCA TTTTCAGACCCCAGAAGGACCTTGCGATGGACGAAGAGGGAGGCCAGAAGCCGGCTGCCT CACCCACAAGGAAGAAATTCGTCATACCACTGGACGAGGATGAAGTCCCTCCTCCTGGGG CCAAGCCCTTATTCAAATGCACACGGAGCCTGCCCACCGTGGAGACCCCACCCCAGCCGG CCCCGCAGACCTATGCTGAGTACGCCATCTCAGGACCTCCAGGAGGGGCTGGAGCCACAC ACCCCACGGGGCCAGAACCCCTGGCAGGAGAGACCCCCAACCAGGCTCCCAAACCAGGAG CAAAATCCAACAGCATCATTGTGAGCCCCCGGCAGAGGGGCAACCCCGTGCTGAGGTTTG TGCGCAACGTGCCCTGGCAGTTTGGCGATGTGCTTCCCGACTACGTGCTGGGCCAGAGCA CCTGTGCCCTCTTCCTCAGCCTCCGCTACCACAACCTCCACCCAGACTACATCCACCAGC GGCTGCAGAGCCTGGGGAAGAGCTTCGCCCTGCGGGTCCTGCTCGTCCAGGTAGACGTGA AAGATCCGCAGCAGGCCCTCAGGGACCTGGCTAAGATGTGCATCCTGGCCGACTGCACCC TGATCCTCGCCTGGAGCCCCGAGGAGGCCGGGCGGTACCTGGAGACGTACAAGGCCTATG AGCAGAAGCCAGCAGATCTCCTGATGGAGAAGCTGGAGCAAGACTTCGTGTCCAGGGTAA CTGAATGTCTGACCACCGTGAAGTCAGTCAACAAAACCGACAGTCAGACCCTCCTGACTA CTTTTGGGTCCTTGGAACAGCTCACAGCTGCATCGCGGGAAGATCTGGCCTTGTGCCCTG GCCTGGGGCCTCAGAAGGCCCGGAGACTCTTTGACGTCTTACATGAGCCCTTCTTGAAAG CGTCCCGATGAGCTTAGCTGCCCCCAGTGTGACAATAAAGCATTTTCCTGGTCCAGGCTC CGGCCGGTGTGCAGGTGCAGTCACTGGGAGGGAGGTCTTCTCTGCACTCACCTTCTGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTCTGGAGCTGGACCGTATGGACTCCTGGGATTTCGGAGTGGGGATGGCTGTGACTGGG TGTTCCTCCCGGGGTGATGGGAATGCCGATCTCGTACTTGCTGCCGATGCTACGCCTTCA TTTTCAGACCCCAGAAGGACCTTGCGATGGACGAAGAGGGAGGCCAGAAGCCGGCTGCCT CACCCACAAGGAAGAAATTCGTCATACCACTGGACGAGGATGAAGTCCCTCCTCCTGGGG CCAAGCCCTTATTCAAATGCACACGGAGCCTGCCCACCGTGGAGACCCCACCCCAGCCGG CCCCGCAGACCTATGCTGAGTACGCCATCTCAGGACCTCCAGGAGGGGCTGGAGCCACAC ACCCCACGGGGCCAGAACCCCTGGCAGGAGAGACCCCCAACCAGGCTCCCAAACCAGGAG CAAAATCCAACAGCATCATTGTGAGCCCCCGGCAGAGGGGCAACCCCGTGCTGAGGTTTG TGCGCAACGTGCCCTGGCAGTTTGGCGATGTGCTTCCCGACTACGTGCTGGGCCAGAGCA CCTGTGCCCTCTTCCTCAGCCTCCGCTACCACAACCTCCACCCAGACTACATCCACCAGC GGCTGCAGAGCCTGGGGAAGAGCTTCGCCCTGCGGGTCCTGCTCGTCCAGGTAGACGTGA AAGATCCGCAGCAGGCCCTCAGGGACCTGGCTAAGATGTGCATCCTGGCCGACTGCACCC TGATCCTCGCCTGGAGCCCCGAGGAGGCCGGGCGGTACCTGGAGACGTACAAGGCCTATG AGCAGAAGCCAGCAGATCTCCTGATGGAGAAGCTGGAGCAAGACTTCGTGTCCAGGGTAA CTGAATGTCTGACCACCGTGAAGTCAGTCAACAAAACCGACAGTCAGACCCTCCTGACTA CTTTTGGGTCCTTGGAACAGCTCACAGCTGCATCGCGGGAAGATCTGGCCTTGTGCCCTG GCCTGGGGCCTCAGAAGGCCCGGAGACTCTTTGACGTCTTACATGAGCCCTTCTTGAAAG CGTCCCGATGAGCTTAGCTGCCCCCAGTGTGACAATAAAGCATTTTCCTGGTCCAGGCTC CGGCCGGTGTGCAGGTGCAGTCACTGGGAGGGAGGTCTTCTCTGCACTCACCTTCTGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 278-368, - strand, RNAz p=0.897225 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 278-368, - strand, RNAz p=0.897225 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 239-455, gnl|bosTau2|chr18 (38462929-38463145) | |
| 239-455, gnl|canFam2|chr1 (113023518-113023348) | |
| 239-455, gnl|hg17|chr19 (50616267-50616438) | |
| 239-455, gnl|Hg17|chr19 (50616492-50616276) | |
| 239-455, gnl|loxAfr1|scaffold_20780 (1075-904) | |
| 239-455, gnl|mm7|chr7 (17031000-17030830) | |
| 239-455, gnl|Mm7|chr7 (17030774-17030990) | |
| 239-455, gnl|monDom2|scaffold_205 (878953-878686) | |
| 239-455, gnl|oryCun1|scaffold_62414 (172-4) | |
| 239-455, gnl|panTro1|chr20 (47905539-47905710) | |
| 239-455, gnl|rheMac2|chr19 (51855369-51855540) | |
| 239-455, gnl|rn3|chr1 (78792056-78791886) | |
| 554-659, gnl|bosTau2|chr18 (38467554-38467659) | |
| 554-659, gnl|canFam2|chr1 (113029880-113029768) | |
| 554-659, gnl|danRer3|chr9 (30632126-30632237) | |
| 554-659, gnl|fr1|chrUn (132510707-132510813) | |
| 554-659, gnl|hg17|chr19 (50614188-50614300) | |
| 554-659, gnl|Hg17|chr19 (50614301-50614196) | |
| 554-659, gnl|mm7|chr7 (17033176-17033064) | |
| 554-659, gnl|Mm7|chr7 (17033059-17033166) | |
| 554-659, gnl|monDom2|scaffold_205 (880727-880617) | |
| 554-659, gnl|panTro1|chr20 (47903506-47903618) | |
| 554-659, gnl|rheMac2|chr19 (51853490-51853602) | |
| 554-659, gnl|rn3|chr1 (78794506-78794394) | |
| 554-659, gnl|tetNig1|chr2 (12805128-12805236) | |
| 735-838, gnl|bosTau2|chr18 (38473408-38473511) | |
| 735-838, gnl|canFam2|chr1 (113035681-113035549) | |
| 735-838, gnl|danRer3|chr9 (30631575-30631682) | |
| 735-838, gnl|dasNov1|scaffold_30195 (20865-20999) | |
| 735-838, gnl|fr1|chrUn (132510250-132510359) | |
| 735-838, gnl|hg17|chr19 (50609953-50610085) | |
| 735-838, gnl|Hg17|chr19 (50610060-50609957) | |
| 735-838, gnl|loxAfr1|scaffold_20780 (10385-10253) | |
| 735-838, gnl|mm7|chr7 (17036812-17036676) | |
| 735-838, gnl|Mm7|chr7 (17036698-17036801) | |
| 735-838, gnl|monDom2|scaffold_205 (882411-882276) | |
| 735-838, gnl|panTro1|chr20 (47899284-47899416) | |
| 735-838, gnl|rn3|chr1 (78798613-78798476) | |
| 735-838, gnl|tetNig1|chr2 (12804711-12804805) | |
| 969-1140, gnl|bosTau2|chr18 (38475360-38475540) | |
| 969-1140, gnl|canFam2|chr1 (113038170-113037857) | |
| 969-1140, gnl|echTel1|scaffold_289308 (50961-50732) | |
| 969-1140, gnl|hg17|chr19 (50604478-50604783) | |
| 969-1140, gnl|Hg17|chr19 (50604832-50604653) | |
| 969-1140, gnl|loxAfr1|scaffold_20780 (13137-12855) | |
| 969-1140, gnl|mm7|chr7 (17039090-17038835) | |
| 969-1140, gnl|Mm7|chr7 (17038789-17038961) | |
| 969-1140, gnl|monDom2|scaffold_205 (883581-883288) | |
| 969-1140, gnl|panTro1|chr20_random (22571773-22572078) | |
| 969-1140, gnl|rheMac2|chr19 (51841345-51841647) | |
| 969-1140, gnl|rn3|chr1 (78800755-78800522) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 239-455, gnl|bosTau2|chr18 (38462929-38463145) | |
| 239-455, gnl|canFam2|chr1 (113023518-113023348) | |
| 239-455, gnl|hg17|chr19 (50616267-50616438) | |
| 239-455, gnl|Hg17|chr19 (50616492-50616276) | |
| 239-455, gnl|loxAfr1|scaffold_20780 (1075-904) | |
| 239-455, gnl|mm7|chr7 (17031000-17030830) | |
| 239-455, gnl|Mm7|chr7 (17030774-17030990) | |
| 239-455, gnl|monDom2|scaffold_205 (878953-878686) | |
| 239-455, gnl|oryCun1|scaffold_62414 (172-4) | |
| 239-455, gnl|panTro1|chr20 (47905539-47905710) | |
| 239-455, gnl|rheMac2|chr19 (51855369-51855540) | |
| 239-455, gnl|rn3|chr1 (78792056-78791886) | |
| 554-659, gnl|bosTau2|chr18 (38467554-38467659) | |
| 554-659, gnl|canFam2|chr1 (113029880-113029768) | |
| 554-659, gnl|danRer3|chr9 (30632126-30632237) | |
| 554-659, gnl|fr1|chrUn (132510707-132510813) | |
| 554-659, gnl|hg17|chr19 (50614188-50614300) | |
| 554-659, gnl|Hg17|chr19 (50614301-50614196) | |
| 554-659, gnl|mm7|chr7 (17033176-17033064) | |
| 554-659, gnl|Mm7|chr7 (17033059-17033166) | |
| 554-659, gnl|monDom2|scaffold_205 (880727-880617) | |
| 554-659, gnl|panTro1|chr20 (47903506-47903618) | |
| 554-659, gnl|rheMac2|chr19 (51853490-51853602) | |
| 554-659, gnl|rn3|chr1 (78794506-78794394) | |
| 554-659, gnl|tetNig1|chr2 (12805128-12805236) | |
| 735-838, gnl|bosTau2|chr18 (38473408-38473511) | |
| 735-838, gnl|canFam2|chr1 (113035681-113035549) | |
| 735-838, gnl|danRer3|chr9 (30631575-30631682) | |
| 735-838, gnl|dasNov1|scaffold_30195 (20865-20999) | |
| 735-838, gnl|fr1|chrUn (132510250-132510359) | |
| 735-838, gnl|hg17|chr19 (50609953-50610085) | |
| 735-838, gnl|Hg17|chr19 (50610060-50609957) | |
| 735-838, gnl|loxAfr1|scaffold_20780 (10385-10253) | |
| 735-838, gnl|mm7|chr7 (17036812-17036676) | |
| 735-838, gnl|Mm7|chr7 (17036698-17036801) | |
| 735-838, gnl|monDom2|scaffold_205 (882411-882276) | |
| 735-838, gnl|panTro1|chr20 (47899284-47899416) | |
| 735-838, gnl|rn3|chr1 (78798613-78798476) | |
| 735-838, gnl|tetNig1|chr2 (12804711-12804805) | |
| 969-1140, gnl|bosTau2|chr18 (38475360-38475540) | |
| 969-1140, gnl|canFam2|chr1 (113038170-113037857) | |
| 969-1140, gnl|echTel1|scaffold_289308 (50961-50732) | |
| 969-1140, gnl|hg17|chr19 (50604478-50604783) | |
| 969-1140, gnl|Hg17|chr19 (50604832-50604653) | |
| 969-1140, gnl|loxAfr1|scaffold_20780 (13137-12855) | |
| 969-1140, gnl|mm7|chr7 (17039090-17038835) | |
| 969-1140, gnl|Mm7|chr7 (17038789-17038961) | |
| 969-1140, gnl|monDom2|scaffold_205 (883581-883288) | |
| 969-1140, gnl|panTro1|chr20_random (22571773-22572078) | |
| 969-1140, gnl|rheMac2|chr19 (51841345-51841647) | |
| 969-1140, gnl|rn3|chr1 (78800755-78800522) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| nms (0.213858) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| csp (0.161186) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| csp (0.161186) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| cty (0.10408) |