Non-Coding RNA Search

Ss1.1-LyN1-MLN01B040009.5

Sequence:


               
               TCAGCTTTAGCACTGACCCCCAGGACTTCATCCAGGAATGGCTCCGTTCCCAGCGCCGGG
ACCTCAAGATCATCACTGATGTGATTGGGAATCCTGAGGAGGAGAGACGAGCTGCCTTCT
ACCACCAGCCCTGGGCCCAGGAAGCAGTGGGGAGGCACATCTTTGCCAAGGTGCAGCAGC
GAAGGCAGGAACTGGAACAGGTGCTGGGAATCCGCCTGACCTAACTGCTCAGGGATCCCT
TTCTTCCCAGCCCTGGAGCCACCCCCTCCTCGGCCTGGAAGGGGACCACCCTCTGGAGTG
CCGACACTTAGGATAAGGAGGGGGTGAGAGGTGTCTCCTGACACTCTCTGCTCCCAGCTT
TCGTTTCAAAATGTAGTGATAGGATTCCTTGTTGCTTGGTCCCCAAAGCCTTATTATTTT
ACACGTTGGCTTTAATTGGGTTCACAGGAGGCCTTCTCTGCCCCCTGCAGGCAGGCCCGA
GTAGGACCTGGAGGCTGTGCTTTGACATTGTAAGGAGACCTTTCAGAACCAAAGGCCACT
CTGGCTTTGCTTGTTTACAGACCCCCTGAGGGCGAGTGTCGGAGCTGGCTCTGGGGAGCT
GGGCGAGGAAGAGGGGCACAGCTCACACTCTTCCTAGCCTTTCCAAACCAAAGTTCTTTG
CCATTCCTACCAGCCCAGCCTTGCTGCTGGCTTTTTCCTTTCCTTTGGGTATTTGCACTA
TTTGTGGAGCAGGTTTTTCTATGCGGGAGCCACTTTTTATACAGGGGTAAGCTGGGGTTT
TTCAGGGAGCCCTACTTGGTGCCTCCTTCCTTCTTTTCTTTCCTTGATCTATGCAAGCGG
CTCCAGCCGCCATCATCTCCTGGGATGCCAGAGGGCCGCCGCCCCGGCTCTTGGGCTTGG
GGGGAGCACCTCTTAGAGGAAGGGTGCACTCTATTCTCGGGCACGGCCTGAGGTGTGGGT
GTGCGGGCTTGCTGGAGGGCAGGGTGAGAAGAGGAGCAGTGGGCAGGACTGCTGTTGCCC
TTTGGAGCTCGGTAAGGAGGGTGGGTGGGCCTAGGGCTTGGCAAGTGCCACTTCTGGCAG
GTTTGGAAATTTCCAAATAAATCTTTTGTTTATTGGTGGTACCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCTTTAGCACTGACCCCCAGGACTTCATCCAGGAATGGCTCCGTTCCCAGCGCCGGG
ACCTCAAGATCATCACTGATGTGATTGGGAATCCTGAGGAGGAGAGACGAGCTGCCTTCT
ACCACCAGCCCTGGGCCCAGGAAGCAGTGGGGAGGCACATCTTTGCCAAGGTGCAGCAGC
GAAGGCAGGAACTGGAACAGGTGCTGGGAATCCGCCTGACCTAACTGCTCAGGGATCCCT
TTCTTCCCAGCCCTGGAGCCACCCCCTCCTCGGCCTGGAAGGGGACCACCCTCTGGAGTG
CCGACACTTAGGATAAGGAGGGGGTGAGAGGTGTCTCCTGACACTCTCTGCTCCCAGCTT
TCGTTTCAAAATGTAGTGATAGGATTCCTTGTTGCTTGGTCCCCAAAGCCTTATTATTTT
ACACGTTGGCTTTAATTGGGTTCACAGGAGGCCTTCTCTGCCCCCTGCAGGCAGGCCCGA
GTAGGACCTGGAGGCTGTGCTTTGACATTGTAAGGAGACCTTTCAGAACCAAAGGCCACT
CTGGCTTTGCTTGTTTACAGACCCCCTGAGGGCGAGTGTCGGAGCTGGCTCTGGGGAGCT
GGGCGAGGAAGAGGGGCACAGCTCACACTCTTCCTAGCCTTTCCAAACCAAAGTTCTTTG
CCATTCCTACCAGCCCAGCCTTGCTGCTGGCTTTTTCCTTTCCTTTGGGTATTTGCACTA
TTTGTGGAGCAGGTTTTTCTATGCGGGAGCCACTTTTTATACAGGGGTAAGCTGGGGTTT
TTCAGGGAGCCCTACTTGGTGCCTCCTTCCTTCTTTTCTTTCCTTGATCTATGCAAGCGG
CTCCAGCCGCCATCATCTCCTGGGATGCCAGAGGGCCGCCGCCCCGGCTCTTGGGCTTGG
GGGGAGCACCTCTTAGAGGAAGGGTGCACTCTATTCTCGGGCACGGCCTGAGGTGTGGGT
GTGCGGGCTTGCTGGAGGGCAGGGTGAGAAGAGGAGCAGTGGGCAGGACTGCTGTTGCCC
TTTGGAGCTCGGTAAGGAGGGTGGGTGGGCCTAGGGCTTGGCAAGTGCCACTTCTGGCAG
GTTTGGAAATTTCCAAATAAATCTTTTGTTTATTGGTGGTACCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6642762|gb|AAF20280.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6642762|gb|AAF20280.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               398-702, - strand, RNAz p=0.986052
               

               
               820-973, + strand, RNAz p=0.815193

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-702, - strand, RNAz p=0.986052
               

               
               820-973, + strand, RNAz p=0.815193

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               169-1125, gnl|bosTau2|chr19 (40507116-40506173)
               

               
               169-1125, gnl|Hg17|chr17 (59264085-59263163)
               

               
               169-1125, gnl|Mm7|chr11 (106373162-106372214)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-1125, gnl|bosTau2|chr19 (40507116-40506173)
               

               
               169-1125, gnl|Hg17|chr17 (59264085-59263163)
               

               
               169-1125, gnl|Mm7|chr11 (106373162-106372214)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cut (0.339847)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	398-702, - strand, RNAz p=0.986052
	820-973, + strand, RNAz p=0.815193

	169-1125, gnl\|bosTau2\|chr19 (40507116-40506173)
	169-1125, gnl\|Hg17\|chr17 (59264085-59263163)
	169-1125, gnl\|Mm7\|chr11 (106373162-106372214)

	cut (0.339847)
	mcp (0.170648)
	cli (0.152812)
	che (0.136314)
	ebs (0.118301)
	jej (0.0989218)
	eje (0.0988338)