Ss1.1-LyN1-MLN01B040019.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATTGCAGGAACTGGTGGATCAGCTCTATACATTTCGAGAGTGCTATTTCGAGACACAT AGTGTTGAGGATGCTGGGAGGAAACAACAGGATGTGCGGAAAGAGATGGAGAAGACCCTG CAGCAAATGGAGGAAGTAGTAGGTTCTATCCAGGGCAATGCACAGGTTCTGATGCTAACT GGGAAGGCACTGAATGTGACTCCTGACTATAGCTCTAAGGCTGAGGAGCTTCTGTCAAAG GCTGTGAAGCTGGAGCCCAAACTGGTGGAAGCCTGGAACCAGTTGGGTGAGGTGTATTGG AAGAAAGGGGATGTCGCAGCTGCCCACACCTGCTTCTCAGGAGCCCTCACCCATTGCAAG AACAAAGTCTCCCTTCAAAACCTGTCAATGGTGCTTCGTCAGCTGCGGACTGACTCTGGA GATGAACATTCTCGCCATGTCATGGACAGTGTCCGGCAGGCTAAGTTGGCTGTGCAGATG GACATCCTTGATGGCCGCTCCTGGTATATTCTGGGGAATGCATACCTTTCTCTTTACTTC AATACTGGCCAGAACCCTAAGATCTCCCAGCAAGCCCTCAGTGCCTATGCCCAAGCAGAG AAGGTTGACAGGACAGCTTCCAGCAATCCTGATCTTCATCTGAATAGGGCAACGCTACAT AAATATGAAGAGAATTATGGGGAGGCTTTGGAGGGCTTTTTTCGGGCTGCAGCACTGGAT CCTGCCTGGCCAGAGCCCCGGCAACGAGAGCAACAACTCCTGGATTTCCTAAACAGATTA ACCAGCCTCCTTGAGAGCAAGGGAAAGGTGAAGACCAAAAAGTTACAGAGCATGCTGGGA AGCTTGCGCCTAGCCCATCTAGGCCCTTGTGGTGATGGGCGCTATCAGTCAGCCTCTGGG CAGAAGGTGACCCTGGAGCGCAAGCCACTGAGTGCTCTGCAGCCTGGTGTAAACAGTGGA GCTGTGGTCCTGGGAAAGGTGGTGTTCAGCCTCACCACGGAGGAGAAGGTCCCCTTTACA TTTGGCCTGGTAGATTCAGATGGACCTTGCTGTGCAGTGATGGTGTATAATATGGTGCAG AGTTGGGGAGTGCTCATTGGGGACTCTGTAGCCATCCCCGAACCTAACCTTCGGCTTCAT CGAATTCAGCACAAGGGAAAGGACTATTCCTTTTCCAGTGTTCGTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATTGCAGGAACTGGTGGATCAGCTCTATACATTTCGAGAGTGCTATTTCGAGACACAT AGTGTTGAGGATGCTGGGAGGAAACAACAGGATGTGCGGAAAGAGATGGAGAAGACCCTG CAGCAAATGGAGGAAGTAGTAGGTTCTATCCAGGGCAATGCACAGGTTCTGATGCTAACT GGGAAGGCACTGAATGTGACTCCTGACTATAGCTCTAAGGCTGAGGAGCTTCTGTCAAAG GCTGTGAAGCTGGAGCCCAAACTGGTGGAAGCCTGGAACCAGTTGGGTGAGGTGTATTGG AAGAAAGGGGATGTCGCAGCTGCCCACACCTGCTTCTCAGGAGCCCTCACCCATTGCAAG AACAAAGTCTCCCTTCAAAACCTGTCAATGGTGCTTCGTCAGCTGCGGACTGACTCTGGA GATGAACATTCTCGCCATGTCATGGACAGTGTCCGGCAGGCTAAGTTGGCTGTGCAGATG GACATCCTTGATGGCCGCTCCTGGTATATTCTGGGGAATGCATACCTTTCTCTTTACTTC AATACTGGCCAGAACCCTAAGATCTCCCAGCAAGCCCTCAGTGCCTATGCCCAAGCAGAG AAGGTTGACAGGACAGCTTCCAGCAATCCTGATCTTCATCTGAATAGGGCAACGCTACAT AAATATGAAGAGAATTATGGGGAGGCTTTGGAGGGCTTTTTTCGGGCTGCAGCACTGGAT CCTGCCTGGCCAGAGCCCCGGCAACGAGAGCAACAACTCCTGGATTTCCTAAACAGATTA ACCAGCCTCCTTGAGAGCAAGGGAAAGGTGAAGACCAAAAAGTTACAGAGCATGCTGGGA AGCTTGCGCCTAGCCCATCTAGGCCCTTGTGGTGATGGGCGCTATCAGTCAGCCTCTGGG CAGAAGGTGACCCTGGAGCGCAAGCCACTGAGTGCTCTGCAGCCTGGTGTAAACAGTGGA GCTGTGGTCCTGGGAAAGGTGGTGTTCAGCCTCACCACGGAGGAGAAGGTCCCCTTTACA TTTGGCCTGGTAGATTCAGATGGACCTTGCTGTGCAGTGATGGTGTATAATATGGTGCAG AGTTGGGGAGTGCTCATTGGGGACTCTGTAGCCATCCCCGAACCTAACCTTCGGCTTCAT CGAATTCAGCACAAGGGAAAGGACTATTCCTTTTCCAGTGTTCGTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 179-354, + strand, RNAz p=0.992765 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 179-354, + strand, RNAz p=0.992765 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 140-354, gnl|bosTau2|chr10 (16513334-16513548) | |
| 140-354, gnl|canFam2|chr15 (20669565-20669780) | |
| 140-354, gnl|canFam2|chr15 (20669775-20669602) | |
| 140-354, gnl|danRer3|chr7 (9991855-9992071) | |
| 140-354, gnl|dasNov1|scaffold_12159 (17742-17527) | |
| 140-354, gnl|dasNov1|scaffold_12159 (17532-17706) | |
| 140-354, gnl|echTel1|scaffold_291112 (2693-2483) | |
| 140-354, gnl|echTel1|scaffold_291112 (2488-2658) | |
| 140-354, gnl|fr1|chrUn (247422688-247422498) | |
| 140-354, gnl|fr1|chrUn (247422438-247422666) | |
| 140-354, gnl|hg17|chr12 (40591537-40591712) | |
| 140-354, gnl|hg17|chr14 (19838602-19838817) | |
| 140-354, gnl|Hg17|chr14 (19838820-19838606) | |
| 140-354, gnl|loxAfr1|scaffold_38398 (43310-43525) | |
| 140-354, gnl|loxAfr1|scaffold_38398 (43520-43349) | |
| 140-354, gnl|mm7|chr14 (46111650-46111865) | |
| 140-354, gnl|Mm7|chr14 (46111868-46111654) | |
| 140-354, gnl|mm7|chr15 (93169784-93169938) | |
| 140-354, gnl|monDom2|scaffold_12 (30694340-30694125) | |
| 140-354, gnl|monDom2|scaffold_12 (30694153-30694306) | |
| 140-354, gnl|oryCun1|scaffold_115435 (4957-5172) | |
| 140-354, gnl|oryCun1|scaffold_115435 (5167-4996) | |
| 140-354, gnl|panTro1|chr10 (41183649-41183824) | |
| 140-354, gnl|panTro1|chrUn_random (21161134-21161349) | |
| 140-354, gnl|rheMac2|chr11 (38828849-38829024) | |
| 140-354, gnl|rheMac2|chr7 (83009613-83009828) | |
| 140-354, gnl|rn3|chr15 (26774860-26775075) | |
| 140-354, gnl|rn3|chr7 (131655597-131655736) | |
| 140-354, gnl|tetNig1|chr20 (709424-709233) | |
| 140-354, gnl|tetNig1|chr20 (709176-709402) | |
| 140-354, gnl|xenTro1|scaffold_339 (1038268-1038053) | |
| 800-1016, gnl|bosTau2|chr10 (16518182-16518398) | |
| 800-1016, gnl|canFam2|chr15 (20664947-20664806) | |
| 800-1016, gnl|dasNov1|scaffold_12159 (23836-23977) | |
| 800-1016, gnl|echTel1|scaffold_291112 (3080-3205) | |
| 800-1016, gnl|hg17|chr12 (40592146-40592284) | |
| 800-1016, gnl|Hg17|chr14 (19833527-19833311) | |
| 800-1016, gnl|Mm7|chr14 (46106229-46106013) | |
| 800-1016, gnl|mm7|chr3 (128792317-128792176) | |
| 800-1016, gnl|monDom2|scaffold_12 (30700352-30700491) | |
| 800-1016, gnl|panTro1|chr10 (41184258-41184396) | |
| 800-1016, gnl|rheMac2|chr11 (38829449-38829587) | |
| 800-1016, gnl|rn3|chr15 (26769970-26769840) | |
| 1017-1162, gnl|bosTau2|chr10 (16521609-16521754) | |
| 1017-1162, gnl|Hg17|chr14 (19830126-19829981) | |
| 1017-1162, gnl|Mm7|chr14 (46101184-46101039) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-354, gnl|bosTau2|chr10 (16513334-16513548) | |
| 140-354, gnl|canFam2|chr15 (20669565-20669780) | |
| 140-354, gnl|canFam2|chr15 (20669775-20669602) | |
| 140-354, gnl|danRer3|chr7 (9991855-9992071) | |
| 140-354, gnl|dasNov1|scaffold_12159 (17742-17527) | |
| 140-354, gnl|dasNov1|scaffold_12159 (17532-17706) | |
| 140-354, gnl|echTel1|scaffold_291112 (2693-2483) | |
| 140-354, gnl|echTel1|scaffold_291112 (2488-2658) | |
| 140-354, gnl|fr1|chrUn (247422688-247422498) | |
| 140-354, gnl|fr1|chrUn (247422438-247422666) | |
| 140-354, gnl|hg17|chr12 (40591537-40591712) | |
| 140-354, gnl|hg17|chr14 (19838602-19838817) | |
| 140-354, gnl|Hg17|chr14 (19838820-19838606) | |
| 140-354, gnl|loxAfr1|scaffold_38398 (43310-43525) | |
| 140-354, gnl|loxAfr1|scaffold_38398 (43520-43349) | |
| 140-354, gnl|mm7|chr14 (46111650-46111865) | |
| 140-354, gnl|Mm7|chr14 (46111868-46111654) | |
| 140-354, gnl|mm7|chr15 (93169784-93169938) | |
| 140-354, gnl|monDom2|scaffold_12 (30694340-30694125) | |
| 140-354, gnl|monDom2|scaffold_12 (30694153-30694306) | |
| 140-354, gnl|oryCun1|scaffold_115435 (4957-5172) | |
| 140-354, gnl|oryCun1|scaffold_115435 (5167-4996) | |
| 140-354, gnl|panTro1|chr10 (41183649-41183824) | |
| 140-354, gnl|panTro1|chrUn_random (21161134-21161349) | |
| 140-354, gnl|rheMac2|chr11 (38828849-38829024) | |
| 140-354, gnl|rheMac2|chr7 (83009613-83009828) | |
| 140-354, gnl|rn3|chr15 (26774860-26775075) | |
| 140-354, gnl|rn3|chr7 (131655597-131655736) | |
| 140-354, gnl|tetNig1|chr20 (709424-709233) | |
| 140-354, gnl|tetNig1|chr20 (709176-709402) | |
| 140-354, gnl|xenTro1|scaffold_339 (1038268-1038053) | |
| 800-1016, gnl|bosTau2|chr10 (16518182-16518398) | |
| 800-1016, gnl|canFam2|chr15 (20664947-20664806) | |
| 800-1016, gnl|dasNov1|scaffold_12159 (23836-23977) | |
| 800-1016, gnl|echTel1|scaffold_291112 (3080-3205) | |
| 800-1016, gnl|hg17|chr12 (40592146-40592284) | |
| 800-1016, gnl|Hg17|chr14 (19833527-19833311) | |
| 800-1016, gnl|Mm7|chr14 (46106229-46106013) | |
| 800-1016, gnl|mm7|chr3 (128792317-128792176) | |
| 800-1016, gnl|monDom2|scaffold_12 (30700352-30700491) | |
| 800-1016, gnl|panTro1|chr10 (41184258-41184396) | |
| 800-1016, gnl|rheMac2|chr11 (38829449-38829587) | |
| 800-1016, gnl|rn3|chr15 (26769970-26769840) | |
| 1017-1162, gnl|bosTau2|chr10 (16521609-16521754) | |
| 1017-1162, gnl|Hg17|chr14 (19830126-19829981) | |
| 1017-1162, gnl|Mm7|chr14 (46101184-46101039) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| ese (0.126502) | |
| eep (0.122564) |