Non-Coding RNA Search

Ss1.1-LyN1-MLN01B040035.5

Sequence:


               
               GTCACGACAAGGGACCCGAGGCAGAGGAGGGCGTCGAGCTGCAGGAAGGCGGGGACGGCC
CTGGGGCGGAGGAGCAGACGGCGGTGGCCATCGCTAGCGTCCAGCAGGCGGCGTTCGGCG
ACCACAACATCCAGTACCAGTTCCGCACAGAGAATAATGGAGGACAGGTGACATACCGCG
TAGTCCAGGTGACTGATGGTCAGCTGGACGGCCAGGGCGACACAGCAGGCGCCGTCAGCG
TCGTGTCTACGGCTGCCTTCGCGGGGGGGCAGCAGGCTGTGACCCAGGTGGGTGTGGAGG
GGGCCACCCAGCGCCCCGGCCCCGCTGCTGCCTCTGTGCCCCCAGGTCCCGCAGCGCCCT
TCCCACTGGCTGTAATCCAAAATCCCTTCAGCAATGGTGGCAGCCCGGCAGCTGAGGCTG
TCAGTGGGGAGGCACGATTTGCCTATTTCCCAGCGTCCAGTGTGGGAGATACCACGGCTG
TGTCCGTACAGACCACAGACCAGAGCTTGCAGGCCGGAGGCCAGTTCTATGTCATGATGA
CGCCCCAGGACGTGCTTCAGACAGGAACGCAGAGGACAATTGCACCCCGGACACACCCCT
ACTCCCCGAAAATCGACGGAACCAGAACACCCCGGGATGAGAGAAGGAGAGCCCAGCACA
ATGAAGTGGAGCGGAGGCGGAGGGACAAGATCAACAACTGGATCGTCCAGCTTTCAAAAA
TCATTCCAGATTGTAACGCAGATAATAGCAAGACGGGAGCGAGCAAAGGTGGGATCCTGT
CGAAGGCCTGTGACTACATCCGGGAGCTGCGCCAGACCAACCAGCGCATGCAGGAGACCT
TCAAGGAGGCCGAGCGGCTGCAGATGGACAATGAGCTCCTGAGGCAACAGATCGAGGAGC
TGAAGAACGAGAATGCCGTGCTCCGCGCGCAGCTGCAGCAGCACAACCTGGAGATGGTGG
GCGAGAGCGCCCGGCAGTGACGCCCGCCCAACCCCAGCGAGCGGCGGGGGCCGCCTCCGG
GCCTCTGCTGTCCCCTTCCCCAGCCCTTAGCACAGAGAGGGACAGATGCCCCTCCCCCAG
CTGCGTTTTTTTATAGTAGATTTTTAACAAAAACAAAAAACAAAAACGGGGAGAAATAAT
GCATTTCTGTGGATAAGCCCCCACCACTCTCCTCAACTTGAAAGCGCTATCCTCCCGCCC
CCCCCGCCGCCCTTCTCCCAGCCCCACTAAGCCCAGCACTTCTAGTGGCCTCGCTGGAGG
CAGGCCGGAGGAGGACAGAGGCCCTGCCATATCCCACTGCCTCCTTGGTCTCTAGAGGTA
CTGACACAGGGTGCTTACGGGAAGGGGGGGAGCCTTTGGGGGCCAGCCCCGGGGCCTGGG
CCTAAGCAGGGAGGCCATGTCCCACCCCACCTCTTGTTTCTGGAACCCTGCTCCCCTTTG
GGTGTGTGAGTGTGTTTTAATTTTCTTTATGGAAAAATGGACAAAAAAAAGAGAGAGAGA
GAGAGAGGTATTTAACTGCAATAAACTGGCCCCATGTGGCCCCGCCTTAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCACGACAAGGGACCCGAGGCAGAGGAGGGCGTCGAGCTGCAGGAAGGCGGGGACGGCC
CTGGGGCGGAGGAGCAGACGGCGGTGGCCATCGCTAGCGTCCAGCAGGCGGCGTTCGGCG
ACCACAACATCCAGTACCAGTTCCGCACAGAGAATAATGGAGGACAGGTGACATACCGCG
TAGTCCAGGTGACTGATGGTCAGCTGGACGGCCAGGGCGACACAGCAGGCGCCGTCAGCG
TCGTGTCTACGGCTGCCTTCGCGGGGGGGCAGCAGGCTGTGACCCAGGTGGGTGTGGAGG
GGGCCACCCAGCGCCCCGGCCCCGCTGCTGCCTCTGTGCCCCCAGGTCCCGCAGCGCCCT
TCCCACTGGCTGTAATCCAAAATCCCTTCAGCAATGGTGGCAGCCCGGCAGCTGAGGCTG
TCAGTGGGGAGGCACGATTTGCCTATTTCCCAGCGTCCAGTGTGGGAGATACCACGGCTG
TGTCCGTACAGACCACAGACCAGAGCTTGCAGGCCGGAGGCCAGTTCTATGTCATGATGA
CGCCCCAGGACGTGCTTCAGACAGGAACGCAGAGGACAATTGCACCCCGGACACACCCCT
ACTCCCCGAAAATCGACGGAACCAGAACACCCCGGGATGAGAGAAGGAGAGCCCAGCACA
ATGAAGTGGAGCGGAGGCGGAGGGACAAGATCAACAACTGGATCGTCCAGCTTTCAAAAA
TCATTCCAGATTGTAACGCAGATAATAGCAAGACGGGAGCGAGCAAAGGTGGGATCCTGT
CGAAGGCCTGTGACTACATCCGGGAGCTGCGCCAGACCAACCAGCGCATGCAGGAGACCT
TCAAGGAGGCCGAGCGGCTGCAGATGGACAATGAGCTCCTGAGGCAACAGATCGAGGAGC
TGAAGAACGAGAATGCCGTGCTCCGCGCGCAGCTGCAGCAGCACAACCTGGAGATGGTGG
GCGAGAGCGCCCGGCAGTGACGCCCGCCCAACCCCAGCGAGCGGCGGGGGCCGCCTCCGG
GCCTCTGCTGTCCCCTTCCCCAGCCCTTAGCACAGAGAGGGACAGATGCCCCTCCCCCAG
CTGCGTTTTTTTATAGTAGATTTTTAACAAAAACAAAAAACAAAAACGGGGAGAAATAAT
GCATTTCTGTGGATAAGCCCCCACCACTCTCCTCAACTTGAAAGCGCTATCCTCCCGCCC
CCCCCGCCGCCCTTCTCCCAGCCCCACTAAGCCCAGCACTTCTAGTGGCCTCGCTGGAGG
CAGGCCGGAGGAGGACAGAGGCCCTGCCATATCCCACTGCCTCCTTGGTCTCTAGAGGTA
CTGACACAGGGTGCTTACGGGAAGGGGGGGAGCCTTTGGGGGCCAGCCCCGGGGCCTGGG
CCTAAGCAGGGAGGCCATGTCCCACCCCACCTCTTGTTTCTGGAACCCTGCTCCCCTTTG
GGTGTGTGAGTGTGTTTTAATTTTCTTTATGGAAAAATGGACAAAAAAAAGAGAGAGAGA
GAGAGAGGTATTTAACTGCAATAAACTGGCCCCATGTGGCCCCGCCTTAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|631793|pir||S42396

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|631793|pir||S42396

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               165-283, + strand, RNAz p=0.75106
               

               
               1045-1163, - strand, RNAz p=0.644234

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-283, + strand, RNAz p=0.75106
               

               
               1045-1163, - strand, RNAz p=0.644234

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               165-369, gnl|bosTau2|chr18 (39791436-39791232)
               

               
               165-369, gnl|Hg17|chr19 (40452543-40452747)
               

               
               165-369, gnl|Mm7|chr7 (27895783-27895579)
               


               
               888-1548, gnl|bosTau2|chr18 (39783158-39782526)
               

               
               888-1548, gnl|Hg17|chr19 (40461907-40462561)
               

               
               888-1548, gnl|Mm7|chr7 (27886452-27885775)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-369, gnl|bosTau2|chr18 (39791436-39791232)
               

               
               165-369, gnl|Hg17|chr19 (40452543-40452747)
               

               
               165-369, gnl|Mm7|chr7 (27895783-27895579)
               


               
               888-1548, gnl|bosTau2|chr18 (39783158-39782526)
               

               
               888-1548, gnl|Hg17|chr19 (40461907-40462561)
               

               
               888-1548, gnl|Mm7|chr7 (27886452-27885775)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               ebs (0.473205)
               

               
               elu (0.385356)
               

               
               cly (0.361925)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               csp (0.322373)
               

               
               clu (0.239292)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.473205)
               

               
               elu (0.385356)
               

               
               cly (0.361925)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               csp (0.322373)
               

               
               clu (0.239292)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	165-283, + strand, RNAz p=0.75106
	1045-1163, - strand, RNAz p=0.644234

	165-369, gnl\|bosTau2\|chr18 (39791436-39791232)
	165-369, gnl\|Hg17\|chr19 (40452543-40452747)
	165-369, gnl\|Mm7\|chr7 (27895783-27895579)

	888-1548, gnl\|bosTau2\|chr18 (39783158-39782526)
	888-1548, gnl\|Hg17\|chr19 (40461907-40462561)
	888-1548, gnl\|Mm7\|chr7 (27886452-27885775)

	ebs (0.473205)
	elu (0.385356)
	cly (0.361925)
	ill (0.351185)
	jca (0.34188)
	mcp (0.341297)
	csp (0.322373)
	clu (0.239292)
	fcc (0.197785)
	nep (0.183925)
	fty (0.17584)
	ton (0.1755)
	fhi (0.169578)
	nco (0.161734)
	cli (0.152812)
	cag (0.151194)
	fat (0.147427)
	hlv (0.139256)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	nbm (0.0993246)