Ss1.1-LyN1-MLN01B040078.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCCGGCGGCGGGCGCGGGGCCGCTACGTGTGCGGGGAGCGCGGGGCTGCGCTCGTGTG CGCTCGTCGCCGCCGCCGCCGCCGCTGCTGCGCCTTTGAGTCAGCAAACTCCGCCACCAG CTCGTCCGCTGCCCGGCTCTGCCCGGAGCTGCCGCCCACTGATCGTGTCCTGCGTTGAAG ATGTTTCCAGAACAACAGAAAGAGGAATTTGTAAGTGTCTGGGTTCGAGACCCTAGGATT CAGAAGGAGGACTTCTGGCATTCTTATATTGACTATGAGATATGTATTCATACCAATAGC ATGTGTTTTACAATGAAGACGTCTTGTGTGAGAAGAAGATATAGAGAATTTGTGTGGCTG AGGCAGAGGCTCCAGAGTAATGCATTGCTGGTACAACTGCCAGAACTTCCATCTAAAAAC CTGTTTTTCAACATGAATAATCGCCAGCACGTAGATCAGCGCCGTCAGGGTTTGGAAGAT TTCCTCAGAAAGGTCCTACAGAACGCGCTTCTGCTTTCCGACAGCAGCCTCCACCTCTTC TTGCAGAGCCATCTGAATTCAGAAGACATTGAGGCCTGTGTTTCTGGGCAGACGAAGTAC TCTGTAGAAGAAGCAATTCACAAGTTTGCCTTGATGAACAGACGCTTCCCTGAAGAAGAG GAAGGGAAAAAAGAAAATGATATAGATTATGATTCAGAAAGTTCATCCTCTGGGTTCGGA CACAGTAGTGATGACAGCAGTTCACACGGATGTAAAATGATCACAGCTCCGCAGGAATCC TGAAAAATAATTCCAATGTTACCATTCTAGGAATAGCAAATTAGGTCCCGTCGCAGAGAC GAAAGCTTGCGCATATTCTCTTCTTACCTAAAGCTCCCTGTCATGTTAAGTATTTAAATT CATAAAGATGTTGTGTTGTTTATTAGTGGTATTTTTATGTTGTCCCACTTTGGCTAAGCT TCTGTAAAAAGCTACGAGCCTGTGAATGCAGCACTCCCCTTGATAGGCGCATACTGTTGG TAAAACAAGATCCTGCCCTCAAATGAAAGGATGTATTGGAGATAATTAAAGTTCTCCTCT GTTACTCAGCCTTTGAGTGTGTTGTGAAAACCAATTTCCTCTTTTTATTATTTTCCCCCT CTCTTCTTTTCCAGTTCATCCTCTGGGTTCGGACACAGTAGTGATGACAGCAGTTCACAC GGATGTAAAATGATCACAGCTCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCCGGCGGCGGGCGCGGGGCCGCTACGTGTGCGGGGAGCGCGGGGCTGCGCTCGTGTG CGCTCGTCGCCGCCGCCGCCGCCGCTGCTGCGCCTTTGAGTCAGCAAACTCCGCCACCAG CTCGTCCGCTGCCCGGCTCTGCCCGGAGCTGCCGCCCACTGATCGTGTCCTGCGTTGAAG ATGTTTCCAGAACAACAGAAAGAGGAATTTGTAAGTGTCTGGGTTCGAGACCCTAGGATT CAGAAGGAGGACTTCTGGCATTCTTATATTGACTATGAGATATGTATTCATACCAATAGC ATGTGTTTTACAATGAAGACGTCTTGTGTGAGAAGAAGATATAGAGAATTTGTGTGGCTG AGGCAGAGGCTCCAGAGTAATGCATTGCTGGTACAACTGCCAGAACTTCCATCTAAAAAC CTGTTTTTCAACATGAATAATCGCCAGCACGTAGATCAGCGCCGTCAGGGTTTGGAAGAT TTCCTCAGAAAGGTCCTACAGAACGCGCTTCTGCTTTCCGACAGCAGCCTCCACCTCTTC TTGCAGAGCCATCTGAATTCAGAAGACATTGAGGCCTGTGTTTCTGGGCAGACGAAGTAC TCTGTAGAAGAAGCAATTCACAAGTTTGCCTTGATGAACAGACGCTTCCCTGAAGAAGAG GAAGGGAAAAAAGAAAATGATATAGATTATGATTCAGAAAGTTCATCCTCTGGGTTCGGA CACAGTAGTGATGACAGCAGTTCACACGGATGTAAAATGATCACAGCTCCGCAGGAATCC TGAAAAATAATTCCAATGTTACCATTCTAGGAATAGCAAATTAGGTCCCGTCGCAGAGAC GAAAGCTTGCGCATATTCTCTTCTTACCTAAAGCTCCCTGTCATGTTAAGTATTTAAATT CATAAAGATGTTGTGTTGTTTATTAGTGGTATTTTTATGTTGTCCCACTTTGGCTAAGCT TCTGTAAAAAGCTACGAGCCTGTGAATGCAGCACTCCCCTTGATAGGCGCATACTGTTGG TAAAACAAGATCCTGCCCTCAAATGAAAGGATGTATTGGAGATAATTAAAGTTCTCCTCT GTTACTCAGCCTTTGAGTGTGTTGTGAAAACCAATTTCCTCTTTTTATTATTTTCCCCCT CTCTTCTTTTCCAGTTCATCCTCTGGGTTCGGACACAGTAGTGATGACAGCAGTTCACAC GGATGTAAAATGATCACAGCTCCG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 289-399, gnl|bosTau2|chr4 (40463404-40463514) | |
| 289-399, gnl|canFam2|chr14 (42589182-42589298) | |
| 289-399, gnl|danRer3|chr16 (19287091-19287204) | |
| 289-399, gnl|dasNov1|scaffold_373 (136835-136719) | |
| 289-399, gnl|echTel1|scaffold_318005 (30040-30156) | |
| 289-399, gnl|galGal2|chr2 (31424903-31425019) | |
| 289-399, gnl|hg17|chr7 (26177385-26177501) | |
| 289-399, gnl|Hg17|chr7 (26177392-26177502) | |
| 289-399, gnl|loxAfr1|scaffold_3675 (4977-4861) | |
| 289-399, gnl|mm7|chr6 (51543095-51543211) | |
| 289-399, gnl|Mm7|chr6 (51543102-51543212) | |
| 289-399, gnl|monDom2|scaffold_57 (1662766-1662650) | |
| 289-399, gnl|oryCun1|scaffold_102767 (5024-4914) | |
| 289-399, gnl|rheMac2|chr3 (99884438-99884322) | |
| 289-399, gnl|rn3|chr4 (80119671-80119787) | |
| 289-399, gnl|tetNig1|chr8 (6644078-6643963) | |
| 289-399, gnl|xenTro1|scaffold_29 (1455325-1455441) | |
| 700-1052, gnl|bosTau2|chr4 (40472691-40473043) | |
| 700-1052, gnl|Hg17|chr7 (26185349-26185704) | |
| 700-1052, gnl|Mm7|chr6 (51552134-51552481) | |
| 1057-1224, gnl|bosTau2|chr4 (40472594-40472762) | |
| 1057-1224, gnl|canFam2|chr14 (42597154-42597617) | |
| 1057-1224, gnl|dasNov1|scaffold_373 (128782-128320) | |
| 1057-1224, gnl|echTel1|scaffold_318005 (40048-40499) | |
| 1057-1224, gnl|galGal2|chr2 (31433721-31434186) | |
| 1057-1224, gnl|hg17|chr7 (26184981-26185444) | |
| 1057-1224, gnl|Hg17|chr7 (26185253-26185420) | |
| 1057-1224, gnl|loxAfr1|scaffold_8083 (60750-60290) | |
| 1057-1224, gnl|mm7|chr6 (51551767-51552229) | |
| 1057-1224, gnl|Mm7|chr6 (51552038-51552205) | |
| 1057-1224, gnl|monDom2|scaffold_57 (1651967-1651501) | |
| 1057-1224, gnl|oryCun1|scaffold_171019 (11208-10744) | |
| 1057-1224, gnl|panTro1|chr6 (27312165-27312628) | |
| 1057-1224, gnl|rheMac2|chr3 (99876839-99876376) | |
| 1057-1224, gnl|rn3|chr4 (80128173-80128636) | |
| 1057-1224, gnl|xenTro1|scaffold_29 (1465465-1465993) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 289-399, gnl|bosTau2|chr4 (40463404-40463514) | |
| 289-399, gnl|canFam2|chr14 (42589182-42589298) | |
| 289-399, gnl|danRer3|chr16 (19287091-19287204) | |
| 289-399, gnl|dasNov1|scaffold_373 (136835-136719) | |
| 289-399, gnl|echTel1|scaffold_318005 (30040-30156) | |
| 289-399, gnl|galGal2|chr2 (31424903-31425019) | |
| 289-399, gnl|hg17|chr7 (26177385-26177501) | |
| 289-399, gnl|Hg17|chr7 (26177392-26177502) | |
| 289-399, gnl|loxAfr1|scaffold_3675 (4977-4861) | |
| 289-399, gnl|mm7|chr6 (51543095-51543211) | |
| 289-399, gnl|Mm7|chr6 (51543102-51543212) | |
| 289-399, gnl|monDom2|scaffold_57 (1662766-1662650) | |
| 289-399, gnl|oryCun1|scaffold_102767 (5024-4914) | |
| 289-399, gnl|rheMac2|chr3 (99884438-99884322) | |
| 289-399, gnl|rn3|chr4 (80119671-80119787) | |
| 289-399, gnl|tetNig1|chr8 (6644078-6643963) | |
| 289-399, gnl|xenTro1|scaffold_29 (1455325-1455441) | |
| 700-1052, gnl|bosTau2|chr4 (40472691-40473043) | |
| 700-1052, gnl|Hg17|chr7 (26185349-26185704) | |
| 700-1052, gnl|Mm7|chr6 (51552134-51552481) | |
| 1057-1224, gnl|bosTau2|chr4 (40472594-40472762) | |
| 1057-1224, gnl|canFam2|chr14 (42597154-42597617) | |
| 1057-1224, gnl|dasNov1|scaffold_373 (128782-128320) | |
| 1057-1224, gnl|echTel1|scaffold_318005 (40048-40499) | |
| 1057-1224, gnl|galGal2|chr2 (31433721-31434186) | |
| 1057-1224, gnl|hg17|chr7 (26184981-26185444) | |
| 1057-1224, gnl|Hg17|chr7 (26185253-26185420) | |
| 1057-1224, gnl|loxAfr1|scaffold_8083 (60750-60290) | |
| 1057-1224, gnl|mm7|chr6 (51551767-51552229) | |
| 1057-1224, gnl|Mm7|chr6 (51552038-51552205) | |
| 1057-1224, gnl|monDom2|scaffold_57 (1651967-1651501) | |
| 1057-1224, gnl|oryCun1|scaffold_171019 (11208-10744) | |
| 1057-1224, gnl|panTro1|chr6 (27312165-27312628) | |
| 1057-1224, gnl|rheMac2|chr3 (99876839-99876376) | |
| 1057-1224, gnl|rn3|chr4 (80128173-80128636) | |
| 1057-1224, gnl|xenTro1|scaffold_29 (1465465-1465993) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| sug (0.381874) | |
| cte (0.29274) | |
| cbe (0.239234) | |
| cbl (0.229595) | |
| cki (0.165235) | |
| mga (0.160205) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pla (0.133672) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.381874) | |
| cte (0.29274) | |
| cbe (0.239234) | |
| cbl (0.229595) | |
| cki (0.165235) | |
| mga (0.160205) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pla (0.133672) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| cty (0.10408) |