Ss1.1-LyN1-MLN01B050011.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGACCCCTGTGAAGATGTCTGCGACAAGCCCCTCCTCTATGAAATAGGGTGGGGCAAG AAGCTGTCCTATGTCATCGCATTTTCTAAAGATGAGGTGGTTGATGTCACTTGGCGATAT TCTTGTAAACATGAAGAGGTAATCTCCAGAAGAACTAAAATTAAAGAAGAGTTACTTCGA GAAACTATTAATGGACTTAATAAGCAGAGGCAAATATCTTTGTCAGAAAACAGAAGAAAA GAACTTCTCCAAAGGATAATTGTGGAGCTTGTTGAATTTATATCTCCCCGAAGCCCTAAG CCTGGAGAACTTGGCGGAAGGATATCTGGGTCCGTGGCCTGGAGAGTGGCCCGAGGAGAA ATGGGTCCAGAGAGTAAAGAAATCCTGTTCATCCCCTCTGAAGAAGAGAAGATTTCTAAG CAGCTCCACCTTTGCTACAATACTGTAAAAAATCATTATGTCCGAGTTTCAAGTAATAAC CGAATTCTTGATGGATGGGAGAATGGTGTGTGGAAAATGGAATCCATATTCAGAAAAGTT GAAACAGACTGGAACATGGTGTATTTAGCCCGAAAGGAAGGATCGTCTTATGCTTACATT TCCTGGAAGTTTGAATGTGGGTCAGTTGGTCTGAAAGTAGATAGCATTTCCATTAGGACA AGTAGTCAGACCTTTGAGACTGGAACAGTACAGTGGAAACTGCGATCTGATACAGCACAA GTGGAACTGACAGGCGATAAAACTCTTCACTCCTATCATGATTTTTCTGGTGCCACTGAA GTTATTTTGGAAGCAGAATTAAGCGGAGGAGATGGTGGTGTTGCTTGGCAACACACCCAG CTGTTTAGACAAAGCTTAAATGACCATGAAGAAAATTGTTTGGAGATAATTATAAAATTC ATTGACCTTTGAGGATCTGAACATTATGGAAAAGCTGGCAATAATCAAGAACTTAGCATG TTCTAAAGTAATCTGTTGGTTCTGTGCATGCTTAGTTGGCAGTTTGCTACCCTGTACTAG TGTATTTCCTTGTTGGCTCTCCATCATGTAATGTTCATGAAAATATATCTTTATACTATG GACCATAATGACACCTTGAATTAAAAGCTCCCTTCCATATGTGACTATAATTTGGAGTAA AGTCTTACTGCCCCATTATGAGATTTTAATCTAAAAATTGTAAGTATGGTTTTGAAAGTA AAATGAAGGTATTTATGATTAAGGCTATTTGTGATTATGATGAAATCTTAAGCTAATAAT AGTAATTTGACAGTTTCTGATCAGATTAATTTCTCCATAAGTGATTGAAATAGATTTCCT AAGTTTTTAAATTTTTAATAAATGTGAAAGTGTGCTCTCTCATAAGTTATAATGCATGAA AATTTTTATGATTGTAAATATGTAGGCATTTAAGAAATAAAATGAATTATTTTGCTTTAT ATCTTTTTAGTGGTTACTTTGTTTAAATAAAAATCATAAGTATGCTAAACATTAGAATCC ACTTGAGATGAATTATGAAAACATTTAGCATAAAGTTACAGATAAGTTATAAAACCATAA TATGTGGACACTTCAGAAAGTGCTTTACTTTGGAGTTTACTTTTGAGTATTTTTATCTAC CTCATTGAGTAAAATGTTTATTCTTTTTTAAAAAATGTTTATTCTTGACTGTGAAACTAT GTAACTATATTATTCAGAATTTACATAGTGTATCAAGAGTTTGTGTGTGTGTTCCCTAGA ACCTCTCCAATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGACCCCTGTGAAGATGTCTGCGACAAGCCCCTCCTCTATGAAATAGGGTGGGGCAAG AAGCTGTCCTATGTCATCGCATTTTCTAAAGATGAGGTGGTTGATGTCACTTGGCGATAT TCTTGTAAACATGAAGAGGTAATCTCCAGAAGAACTAAAATTAAAGAAGAGTTACTTCGA GAAACTATTAATGGACTTAATAAGCAGAGGCAAATATCTTTGTCAGAAAACAGAAGAAAA GAACTTCTCCAAAGGATAATTGTGGAGCTTGTTGAATTTATATCTCCCCGAAGCCCTAAG CCTGGAGAACTTGGCGGAAGGATATCTGGGTCCGTGGCCTGGAGAGTGGCCCGAGGAGAA ATGGGTCCAGAGAGTAAAGAAATCCTGTTCATCCCCTCTGAAGAAGAGAAGATTTCTAAG CAGCTCCACCTTTGCTACAATACTGTAAAAAATCATTATGTCCGAGTTTCAAGTAATAAC CGAATTCTTGATGGATGGGAGAATGGTGTGTGGAAAATGGAATCCATATTCAGAAAAGTT GAAACAGACTGGAACATGGTGTATTTAGCCCGAAAGGAAGGATCGTCTTATGCTTACATT TCCTGGAAGTTTGAATGTGGGTCAGTTGGTCTGAAAGTAGATAGCATTTCCATTAGGACA AGTAGTCAGACCTTTGAGACTGGAACAGTACAGTGGAAACTGCGATCTGATACAGCACAA GTGGAACTGACAGGCGATAAAACTCTTCACTCCTATCATGATTTTTCTGGTGCCACTGAA GTTATTTTGGAAGCAGAATTAAGCGGAGGAGATGGTGGTGTTGCTTGGCAACACACCCAG CTGTTTAGACAAAGCTTAAATGACCATGAAGAAAATTGTTTGGAGATAATTATAAAATTC ATTGACCTTTGAGGATCTGAACATTATGGAAAAGCTGGCAATAATCAAGAACTTAGCATG TTCTAAAGTAATCTGTTGGTTCTGTGCATGCTTAGTTGGCAGTTTGCTACCCTGTACTAG TGTATTTCCTTGTTGGCTCTCCATCATGTAATGTTCATGAAAATATATCTTTATACTATG GACCATAATGACACCTTGAATTAAAAGCTCCCTTCCATATGTGACTATAATTTGGAGTAA AGTCTTACTGCCCCATTATGAGATTTTAATCTAAAAATTGTAAGTATGGTTTTGAAAGTA AAATGAAGGTATTTATGATTAAGGCTATTTGTGATTATGATGAAATCTTAAGCTAATAAT AGTAATTTGACAGTTTCTGATCAGATTAATTTCTCCATAAGTGATTGAAATAGATTTCCT AAGTTTTTAAATTTTTAATAAATGTGAAAGTGTGCTCTCTCATAAGTTATAATGCATGAA AATTTTTATGATTGTAAATATGTAGGCATTTAAGAAATAAAATGAATTATTTTGCTTTAT ATCTTTTTAGTGGTTACTTTGTTTAAATAAAAATCATAAGTATGCTAAACATTAGAATCC ACTTGAGATGAATTATGAAAACATTTAGCATAAAGTTACAGATAAGTTATAAAACCATAA TATGTGGACACTTCAGAAAGTGCTTTACTTTGGAGTTTACTTTTGAGTATTTTTATCTAC CTCATTGAGTAAAATGTTTATTCTTTTTTAAAAAATGTTTATTCTTGACTGTGAAACTAT GTAACTATATTATTCAGAATTTACATAGTGTATCAAGAGTTTGTGTGTGTGTTCCCTAGA ACCTCTCCAATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 94-207, gnl|bosTau2|chr27 (26578518-26578631) | |
| 94-207, gnl|Hg17|chr3 (25750484-25750367) | |
| 94-207, gnl|Mm7|chr14 (14098585-14098698) | |
| 366-560, gnl|bosTau2|chr27 (26586000-26586193) | |
| 366-560, gnl|canFam2|chr23 (21135683-21135505) | |
| 366-560, gnl|danRer3|chr19 (23774446-23774624) | |
| 366-560, gnl|echTel1|scaffold_102595 (3394-3572) | |
| 366-560, gnl|fr1|chrUn (39839905-39839730) | |
| 366-560, gnl|galGal2|chr2 (37031199-37031375) | |
| 366-560, gnl|hg17|chr3 (25745623-25745801) | |
| 366-560, gnl|Hg17|chr3 (25745818-25745626) | |
| 366-560, gnl|loxAfr1|scaffold_1418 (60332-60510) | |
| 366-560, gnl|mm7|chr14 (14109825-14109647) | |
| 366-560, gnl|Mm7|chr14 (14109628-14109820) | |
| 366-560, gnl|monDom2|scaffold_7 (81613667-81613845) | |
| 366-560, gnl|oryCun1|scaffold_178507 (43590-43412) | |
| 366-560, gnl|panTro1|chr2 (26677570-26677748) | |
| 366-560, gnl|rheMac2|chr2 (168204729-168204907) | |
| 366-560, gnl|rn3|chr15 (10716036-10716214) | |
| 366-560, gnl|xenTro1|scaffold_43 (2379631-2379805) | |
| 736-1645, gnl|bosTau2|chr27 (26591887-26592797) | |
| 736-1645, gnl|Hg17|chr3 (25736131-25735237) | |
| 736-1645, gnl|Mm7|chr14 (14126003-14126884) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 94-207, gnl|bosTau2|chr27 (26578518-26578631) | |
| 94-207, gnl|Hg17|chr3 (25750484-25750367) | |
| 94-207, gnl|Mm7|chr14 (14098585-14098698) | |
| 366-560, gnl|bosTau2|chr27 (26586000-26586193) | |
| 366-560, gnl|canFam2|chr23 (21135683-21135505) | |
| 366-560, gnl|danRer3|chr19 (23774446-23774624) | |
| 366-560, gnl|echTel1|scaffold_102595 (3394-3572) | |
| 366-560, gnl|fr1|chrUn (39839905-39839730) | |
| 366-560, gnl|galGal2|chr2 (37031199-37031375) | |
| 366-560, gnl|hg17|chr3 (25745623-25745801) | |
| 366-560, gnl|Hg17|chr3 (25745818-25745626) | |
| 366-560, gnl|loxAfr1|scaffold_1418 (60332-60510) | |
| 366-560, gnl|mm7|chr14 (14109825-14109647) | |
| 366-560, gnl|Mm7|chr14 (14109628-14109820) | |
| 366-560, gnl|monDom2|scaffold_7 (81613667-81613845) | |
| 366-560, gnl|oryCun1|scaffold_178507 (43590-43412) | |
| 366-560, gnl|panTro1|chr2 (26677570-26677748) | |
| 366-560, gnl|rheMac2|chr2 (168204729-168204907) | |
| 366-560, gnl|rn3|chr15 (10716036-10716214) | |
| 366-560, gnl|xenTro1|scaffold_43 (2379631-2379805) | |
| 736-1645, gnl|bosTau2|chr27 (26591887-26592797) | |
| 736-1645, gnl|Hg17|chr3 (25736131-25735237) | |
| 736-1645, gnl|Mm7|chr14 (14126003-14126884) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| bfe (0.449573) | |
| ski (0.440205) | |
| lin (0.436808) | |
| tes (0.415628) | |
| spc (0.340097) | |
| vin (0.332557) | |
| fco (0.314416) | |
| cte (0.29274) | |
| liv (0.292569) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| rec (0.17307) | |
| isp (0.150376) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (0.449573) | |
| ski (0.440205) | |
| lin (0.436808) | |
| tes (0.415628) | |
| spc (0.340097) | |
| vin (0.332557) | |
| fco (0.314416) | |
| cte (0.29274) | |
| liv (0.292569) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| sin (0.174948) | |
| rec (0.17307) | |
| isp (0.150376) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) |