Ss1.1-LyN1-MLN01B050024.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GCTCAGAATTTCTTGCTCTGAAGTCGCAGCAGCTAGAGAGGAGCTGAGTGTCGCTGTGAG GAGCTGAGAGCTGAGAGCTGAGAGCAAACGCTTGCACGGTTGAAGATGTGGAAGTCTGTA GTAGGGCATGATGTATCTGTTTCCATGGAGACCCAGGGTGATGACTGGGACACAGACCCT GATTTTGTGAATGACATCTCTGAGAAGGAGCAGCGATGGGGGGCCAAGACCATCGAGGGC TCTGGACGCACCGAGCACATCAACATCCACCAGCTGAGAAACAAAGTGTCAGAGGAGCAT GATATTCTCAAGAAGAAGGAGATGGAGTCAGGGCCCAAAGCATCCCATGGTTACGGAGGT CGATTTGGGGTAGAAAGAGACCGGATGGACAAGAGCGCTGTGGGCCATGAATATGTGGCT GAGGTGGAGAAGCACTCCTCTCAGACCGATGCGGCAAGAGGCTTCGGGGGCAAATACGGA GTGGAGAAGGACAGGGCAGACAAGTCAGCAGTTGGCTTTGATTACAAAGGAGAAGTGGAG AAACACACATCTCAGAAAGATTACTCTCGTGGCTTTGGTGGCCGTTATGGTATAGAGGCA GATAAACGGGACAAGGCTGCTCTAGGATATGACTACAAGGGAGAGACAGAGAAACATGAA TCCCAGAGAGATTATGCCAAGGGCTTTGGTGGTCAGTATGGCATCCAGAAGGACCGTGTG GATAAGAGCGCTGTTGGCTTCAATGAAATGGAGGCCCCCACCACAGCTTACAAGAAGACA ACACCCATAGAGGCTGCTTCTAGTGGAGCCCGTGGGCTGAAGGCAAAATTTGAGTCCATG GCTGAAGAAAAGAGAAAGCGGGAGGAAGAAGAGAAGGCACAGCAGATGGCCAGGCAGCAA CAAGAAAGAAAAGCCTTGGTAAAGAAGAGCCAAGAGGCTCAGCAGCCAGTGGCCACTTTG GAAGAGCCAGTGGTACCAGCCCCATTGCCCAAGAAAATCTCCTCAGAGGCTTGGCCTCCA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GCTCAGAATTTCTTGCTCTGAAGTCGCAGCAGCTAGAGAGGAGCTGAGTGTCGCTGTGAG GAGCTGAGAGCTGAGAGCTGAGAGCAAACGCTTGCACGGTTGAAGATGTGGAAGTCTGTA GTAGGGCATGATGTATCTGTTTCCATGGAGACCCAGGGTGATGACTGGGACACAGACCCT GATTTTGTGAATGACATCTCTGAGAAGGAGCAGCGATGGGGGGCCAAGACCATCGAGGGC TCTGGACGCACCGAGCACATCAACATCCACCAGCTGAGAAACAAAGTGTCAGAGGAGCAT GATATTCTCAAGAAGAAGGAGATGGAGTCAGGGCCCAAAGCATCCCATGGTTACGGAGGT CGATTTGGGGTAGAAAGAGACCGGATGGACAAGAGCGCTGTGGGCCATGAATATGTGGCT GAGGTGGAGAAGCACTCCTCTCAGACCGATGCGGCAAGAGGCTTCGGGGGCAAATACGGA GTGGAGAAGGACAGGGCAGACAAGTCAGCAGTTGGCTTTGATTACAAAGGAGAAGTGGAG AAACACACATCTCAGAAAGATTACTCTCGTGGCTTTGGTGGCCGTTATGGTATAGAGGCA GATAAACGGGACAAGGCTGCTCTAGGATATGACTACAAGGGAGAGACAGAGAAACATGAA TCCCAGAGAGATTATGCCAAGGGCTTTGGTGGTCAGTATGGCATCCAGAAGGACCGTGTG GATAAGAGCGCTGTTGGCTTCAATGAAATGGAGGCCCCCACCACAGCTTACAAGAAGACA ACACCCATAGAGGCTGCTTCTAGTGGAGCCCGTGGGCTGAAGGCAAAATTTGAGTCCATG GCTGAAGAAAAGAGAAAGCGGGAGGAAGAAGAGAAGGCACAGCAGATGGCCAGGCAGCAA CAAGAAAGAAAAGCCTTGGTAAAGAAGAGCCAAGAGGCTCAGCAGCCAGTGGCCACTTTG GAAGAGCCAGTGGTACCAGCCCCATTGCCCAAGAAAATCTCCTCAGAGGCTTGGCCTCCA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
892-1009, - strand, RNAz p=0.955206 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
892-1009, - strand, RNAz p=0.955206 |
Aligned organism(s): 39 entry(ies) | More info |
Aligned organism(s): 39 entry(ies) | Help | Less info |
261-393, gnl|bosTau2|chr1 (40585977-40585845) | |
261-393, gnl|canFam2|chr33 (27953947-27954099) | |
261-393, gnl|danRer3|chr4 (28638464-28638327) | |
261-393, gnl|dasNov1|scaffold_1050 (40638-40790) | |
261-393, gnl|echTel1|scaffold_264457 (3333-3181) | |
261-393, gnl|fr1|chrUn (221488763-221488646) | |
261-393, gnl|galGal2|chrUn (6085617-6085759) | |
261-393, gnl|hg17|chr3 (122848851-122849003) | |
261-393, gnl|Hg17|chr3 (122848988-122848856) | |
261-393, gnl|loxAfr1|scaffold_46682 (9163-9011) | |
261-393, gnl|mm7|chr16 (36655109-36654957) | |
261-393, gnl|Mm7|chr16 (36654970-36655102) | |
261-393, gnl|monDom2|scaffold_24 (19064597-19064445) | |
261-393, gnl|oryCun1|scaffold_140717 (7019-7164) | |
261-393, gnl|panTro1|chr2 (124539796-124539948) | |
261-393, gnl|rheMac2|chr2 (41624508-41624660) | |
261-393, gnl|rn3|chr11 (65689147-65689299) | |
261-393, gnl|tetNig1|chr19 (1236144-1236291) | |
558-670, gnl|bosTau2|chr1 (40568942-40568830) | |
558-670, gnl|canFam2|chr33 (27947398-27947492) | |
558-670, gnl|danRer3|chr4 (28640623-28640535) | |
558-670, gnl|dasNov1|scaffold_83233 (4978-5062) | |
558-670, gnl|echTel1|scaffold_320350 (91048-90954) | |
558-670, gnl|fr1|chrUn (221489475-221489381) | |
558-670, gnl|galGal2|chrUn (6082303-6082388) | |
558-670, gnl|hg17|chr3 (122838670-122838765) | |
558-670, gnl|Hg17|chr3 (122838795-122838683) | |
558-670, gnl|loxAfr1|scaffold_131093 (4347-4442) | |
558-670, gnl|mm7|chr16 (36663763-36663669) | |
558-670, gnl|Mm7|chr16 (36663637-36663749) | |
558-670, gnl|monDom2|scaffold_24 (19075399-19075301) | |
558-670, gnl|oryCun1|scaffold_211323 (81996-81901) | |
558-670, gnl|panTro1|chr2 (124529964-124530059) | |
558-670, gnl|rheMac2|chr2 (41614974-41615069) | |
558-670, gnl|rn3|chr11 (65681657-65681751) | |
558-670, gnl|tetNig1|chr19 (1235474-1235575) | |
796-1009, gnl|bosTau2|chr1 (40566649-40566436) | |
796-1009, gnl|Hg17|chr3 (122835956-122835743) | |
796-1009, gnl|Mm7|chr16 (36665590-36665803) |
Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
261-393, gnl|bosTau2|chr1 (40585977-40585845) | |
261-393, gnl|canFam2|chr33 (27953947-27954099) | |
261-393, gnl|danRer3|chr4 (28638464-28638327) | |
261-393, gnl|dasNov1|scaffold_1050 (40638-40790) | |
261-393, gnl|echTel1|scaffold_264457 (3333-3181) | |
261-393, gnl|fr1|chrUn (221488763-221488646) | |
261-393, gnl|galGal2|chrUn (6085617-6085759) | |
261-393, gnl|hg17|chr3 (122848851-122849003) | |
261-393, gnl|Hg17|chr3 (122848988-122848856) | |
261-393, gnl|loxAfr1|scaffold_46682 (9163-9011) | |
261-393, gnl|mm7|chr16 (36655109-36654957) | |
261-393, gnl|Mm7|chr16 (36654970-36655102) | |
261-393, gnl|monDom2|scaffold_24 (19064597-19064445) | |
261-393, gnl|oryCun1|scaffold_140717 (7019-7164) | |
261-393, gnl|panTro1|chr2 (124539796-124539948) | |
261-393, gnl|rheMac2|chr2 (41624508-41624660) | |
261-393, gnl|rn3|chr11 (65689147-65689299) | |
261-393, gnl|tetNig1|chr19 (1236144-1236291) | |
558-670, gnl|bosTau2|chr1 (40568942-40568830) | |
558-670, gnl|canFam2|chr33 (27947398-27947492) | |
558-670, gnl|danRer3|chr4 (28640623-28640535) | |
558-670, gnl|dasNov1|scaffold_83233 (4978-5062) | |
558-670, gnl|echTel1|scaffold_320350 (91048-90954) | |
558-670, gnl|fr1|chrUn (221489475-221489381) | |
558-670, gnl|galGal2|chrUn (6082303-6082388) | |
558-670, gnl|hg17|chr3 (122838670-122838765) | |
558-670, gnl|Hg17|chr3 (122838795-122838683) | |
558-670, gnl|loxAfr1|scaffold_131093 (4347-4442) | |
558-670, gnl|mm7|chr16 (36663763-36663669) | |
558-670, gnl|Mm7|chr16 (36663637-36663749) | |
558-670, gnl|monDom2|scaffold_24 (19075399-19075301) | |
558-670, gnl|oryCun1|scaffold_211323 (81996-81901) | |
558-670, gnl|panTro1|chr2 (124529964-124530059) | |
558-670, gnl|rheMac2|chr2 (41614974-41615069) | |
558-670, gnl|rn3|chr11 (65681657-65681751) | |
558-670, gnl|tetNig1|chr19 (1235474-1235575) | |
796-1009, gnl|bosTau2|chr1 (40566649-40566436) | |
796-1009, gnl|Hg17|chr3 (122835956-122835743) | |
796-1009, gnl|Mm7|chr16 (36665590-36665803) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cje (0.165235) | |
ese (0.126502) | |
cty (0.10408) |