Non-Coding RNA Search

Ss1.1-LyN1-MLN01B050045.5

Sequence:


               
               CGACCCCTACTGAGGCACAGACCGTTGTGGGTTCCTCCAGCTGCCACTCGGTTAAAAATG
GTCTCCAGGATGGTTTCTACCATGCTGTCTGGCCTAGTGTTGTGGCTGACATTTGGATGG
ACTCCAGCATTGGCTTATAGCCCGAGGACCCCTGACCGGGTCTCAGAAACAGATATCCAG
AGGCTGCTCCATGGCGTGATGGAGCAGCTGGGCATTGCCAGGCCACGGGTAGAGTATCCA
GCTCACCAGGCCATGAATCTTGTGGGCCCACAGAGCATCGAAGGTGGAGCTCATGAGGGG
CTACAGCACTTGGGACCCTTTGGCAACATCCCAAACATCGTGGCAGAGTTGACTGGTGAC
AACATTCCTAAAGACTTCAGTGAAGACCAGGGCTACCCGGACCCTCCAAATCCCTGTCCC
ATTGGAAAAACAGATGATGGATGTCTAGAAAACACCCCTGACACAGCGGAGTTCAGTCGA
GAATTCCAGTTACACCAGCACCTTTTTGATCCAGAACATGACTATCCAGGCTTGGGCAAG
TGGAACAAGAAACTCCTGTATGAGAAGATGAAGGGAGGACAGAGACGCAAGCGGAGGAGT
GTCAATCCATATTTACAAGGACAGAGACTGGACAACGTTGTTGCAAAGAAGTCAGTCCCC
CACTTTTCAGATGAGGATAAGGACCCGGAATAAAGTGACGATGCTGGTGGAAACCCCCAC
GACCCCTTGGTTCTCCTTTGGTATTGCTTATGCGCACGTGTCTCTAGAGGCCATGTGAAT
GGCAGCCTGTTTCTAATTTAAACAAGTATGGTTGCACAGCAGCTGTAGTTTGATATCGTG
TTGTCCTTCACTCTCATAGCTCTGCTTACTGCTAATTTGGGGTAAGCGCTTTTCTTTTCT
TTTCTTTTTTTTTAATGTGAGTCTGCAATGAGCATTAAAATTGAAGTGTATATGTCAACA
ACTATAAAAAGCCAATGAATGAAATGTCCTCCAATTTCTTGCAGCTTAAAGTGGTGTTTA
GGGCGGCACTGTTGTGGCCAAGTCTGTAAGAAGCTGGCGTTTGATTTTGATTATGTAGTT
CCTCCAGCCCTTGGGCGTTGTTACACACCAATAAAGGAGATCTTGCCCCAGAGGAGGAGC
GGACACATTTCACTTGGCTGCATCTCAATAAATGTGTATGCAAGCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACCCCTACTGAGGCACAGACCGTTGTGGGTTCCTCCAGCTGCCACTCGGTTAAAAATG
GTCTCCAGGATGGTTTCTACCATGCTGTCTGGCCTAGTGTTGTGGCTGACATTTGGATGG
ACTCCAGCATTGGCTTATAGCCCGAGGACCCCTGACCGGGTCTCAGAAACAGATATCCAG
AGGCTGCTCCATGGCGTGATGGAGCAGCTGGGCATTGCCAGGCCACGGGTAGAGTATCCA
GCTCACCAGGCCATGAATCTTGTGGGCCCACAGAGCATCGAAGGTGGAGCTCATGAGGGG
CTACAGCACTTGGGACCCTTTGGCAACATCCCAAACATCGTGGCAGAGTTGACTGGTGAC
AACATTCCTAAAGACTTCAGTGAAGACCAGGGCTACCCGGACCCTCCAAATCCCTGTCCC
ATTGGAAAAACAGATGATGGATGTCTAGAAAACACCCCTGACACAGCGGAGTTCAGTCGA
GAATTCCAGTTACACCAGCACCTTTTTGATCCAGAACATGACTATCCAGGCTTGGGCAAG
TGGAACAAGAAACTCCTGTATGAGAAGATGAAGGGAGGACAGAGACGCAAGCGGAGGAGT
GTCAATCCATATTTACAAGGACAGAGACTGGACAACGTTGTTGCAAAGAAGTCAGTCCCC
CACTTTTCAGATGAGGATAAGGACCCGGAATAAAGTGACGATGCTGGTGGAAACCCCCAC
GACCCCTTGGTTCTCCTTTGGTATTGCTTATGCGCACGTGTCTCTAGAGGCCATGTGAAT
GGCAGCCTGTTTCTAATTTAAACAAGTATGGTTGCACAGCAGCTGTAGTTTGATATCGTG
TTGTCCTTCACTCTCATAGCTCTGCTTACTGCTAATTTGGGGTAAGCGCTTTTCTTTTCT
TTTCTTTTTTTTTAATGTGAGTCTGCAATGAGCATTAAAATTGAAGTGTATATGTCAACA
ACTATAAAAAGCCAATGAATGAAATGTCCTCCAATTTCTTGCAGCTTAAAGTGGTGTTTA
GGGCGGCACTGTTGTGGCCAAGTCTGTAAGAAGCTGGCGTTTGATTTTGATTATGTAGTT
CCTCCAGCCCTTGGGCGTTGTTACACACCAATAAAGGAGATCTTGCCCCAGAGGAGGAGC
GGACACATTTCACTTGGCTGCATCTCAATAAATGTGTATGCAAGCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61859892|ref|XP_584972.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61859892|ref|XP_584972.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               597-1182, gnl|bosTau2|chr10 (20296382-20296958)
               

               
               597-1182, gnl|Hg17|chr15 (30776006-30776585)
               

               
               597-1182, gnl|Mm7|chr2 (113627135-113626603)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               597-1182, gnl|bosTau2|chr10 (20296382-20296958)
               

               
               597-1182, gnl|Hg17|chr15 (30776006-30776585)
               

               
               597-1182, gnl|Mm7|chr2 (113627135-113626603)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               pgl (2.60664)
               

               
               fhi (0.847889)
               

               
               ecc (0.46014)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               cty (0.31224)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (2.60664)
               

               
               fhi (0.847889)
               

               
               ecc (0.46014)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               cty (0.31224)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	597-1182, gnl\|bosTau2\|chr10 (20296382-20296958)
	597-1182, gnl\|Hg17\|chr15 (30776006-30776585)
	597-1182, gnl\|Mm7\|chr2 (113627135-113626603)

	pgl (2.60664)
	fhi (0.847889)
	ecc (0.46014)
	amn (0.417711)
	elu (0.385356)
	cty (0.31224)
	fce (0.271592)
	ebs (0.236602)
	fbs (0.175346)
	fco (0.157208)
	spl (0.143184)
	hyp (0.142837)
	sug (0.127291)
	thg (0.126791)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)
	spc (0.113366)