Non-Coding RNA Search

Ss1.1-LyN1-MLN01B060044.5

Sequence:


               
               GGCAGCCGCCAGCCCGGTCAGCATGCAGCAGCAGCCCCCACCCGGGCCCCCGGCCCCTGC
GGCCGAGCCGACCAAGCCTCCCTACAGCTATATCGCCCTGATTGCCATGGCCATCCAGAG
CTCACCGGGGCAGCGGGCCACGCTCAGCGGCATCTACCGCTACATCATGGGCCGCTTCGC
CTTCTACCGCCACAACCGGCCCGGCTGGCAGAACAGCATCCGCCACAACCTTTCACTCAA
CGAGTGCTTTGTCAAGGTGCCCCGCGATGATCGCAAGCCCGGCAAGGGCAGCTACTGGAC
GCTGGACCCCGACTGCCACGACATGTTCGAGCACGGCAGCTTCCTCCGCCGACGTCGGCG
CTTCACCCGGCGCGCAGGTGCCGAGGTCGCCAAGGGCCCTGCCAAGGCACGCCGAGGAGC
CCTCAGGGCCACGGGCCAGGACCCGGGAGCCCCCGACGCTGCGACTGGCAGGCAGGGCCC
CTTCCCGCCGGAGCTGCCGGAGCCCAAGGGCCTGAGCTTTGGGGGTCTGGTGGGGGCCTT
GCCAGCCAGCATGTGCCCGGCAACCACCGATGCCAGGCCCCGACCCCCCTCGGAGCCCAA
GGAGATGCCCACATCCAAGCTGGCAGGCCCAGGGGAGCTCCCCGTGGCCACCTCGTCTTC
CCCGTGCCCAGCATTTGGCTTTCCTGCCAGCTTCTCTGAGGCCGAGGGGTTTAGCAAGGC
CCCTGCACCCATCTTGGCCCCGGAAGCAGCCGTCGGGAGCAGCTACCAGTGCCGGCTGCA
GGCGCTGAATTTCTGCATGGGAACTGACCCGGGCTTTGAGCACCTCTTGGCCTCAGCAGC
CCCCTCCCCTGCACCACCCACCCCTCCAGCCTCACTCCGGGCCCCGCTGCCTCTGCCAGC
TGACCCCAAGGAACCTTGGGTTGCAGGCAGCTTCCCCGTCCAGGGAGGCTCGGGCTACCC
TTTGGGGCTGACCCCCTGCCTATACCGGACGCCAGGAATGTTCTTCTTTGAATGAAGCCA
GCCGACCTCGGGCTGTCCCCCGCCAACTGCACCCTCCAGGCCGAGCCTGACTCTAGGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCCGCCAGCCCGGTCAGCATGCAGCAGCAGCCCCCACCCGGGCCCCCGGCCCCTGC
GGCCGAGCCGACCAAGCCTCCCTACAGCTATATCGCCCTGATTGCCATGGCCATCCAGAG
CTCACCGGGGCAGCGGGCCACGCTCAGCGGCATCTACCGCTACATCATGGGCCGCTTCGC
CTTCTACCGCCACAACCGGCCCGGCTGGCAGAACAGCATCCGCCACAACCTTTCACTCAA
CGAGTGCTTTGTCAAGGTGCCCCGCGATGATCGCAAGCCCGGCAAGGGCAGCTACTGGAC
GCTGGACCCCGACTGCCACGACATGTTCGAGCACGGCAGCTTCCTCCGCCGACGTCGGCG
CTTCACCCGGCGCGCAGGTGCCGAGGTCGCCAAGGGCCCTGCCAAGGCACGCCGAGGAGC
CCTCAGGGCCACGGGCCAGGACCCGGGAGCCCCCGACGCTGCGACTGGCAGGCAGGGCCC
CTTCCCGCCGGAGCTGCCGGAGCCCAAGGGCCTGAGCTTTGGGGGTCTGGTGGGGGCCTT
GCCAGCCAGCATGTGCCCGGCAACCACCGATGCCAGGCCCCGACCCCCCTCGGAGCCCAA
GGAGATGCCCACATCCAAGCTGGCAGGCCCAGGGGAGCTCCCCGTGGCCACCTCGTCTTC
CCCGTGCCCAGCATTTGGCTTTCCTGCCAGCTTCTCTGAGGCCGAGGGGTTTAGCAAGGC
CCCTGCACCCATCTTGGCCCCGGAAGCAGCCGTCGGGAGCAGCTACCAGTGCCGGCTGCA
GGCGCTGAATTTCTGCATGGGAACTGACCCGGGCTTTGAGCACCTCTTGGCCTCAGCAGC
CCCCTCCCCTGCACCACCCACCCCTCCAGCCTCACTCCGGGCCCCGCTGCCTCTGCCAGC
TGACCCCAAGGAACCTTGGGTTGCAGGCAGCTTCCCCGTCCAGGGAGGCTCGGGCTACCC
TTTGGGGCTGACCCCCTGCCTATACCGGACGCCAGGAATGTTCTTCTTTGAATGAAGCCA
GCCGACCTCGGGCTGTCCCCCGCCAACTGCACCCTCCAGGCCGAGCCTGACTCTAGGATC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               FREA_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               FREA_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               48-247, - strand, RNAz p=0.863051
               

               
               728-1007, - strand, RNAz p=0.949858

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               48-247, - strand, RNAz p=0.863051
               

               
               728-1007, - strand, RNAz p=0.949858

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               8-1080, gnl|bosTau2|chr13 (44051988-44050905)
               

               
               8-1080, gnl|Hg17|chr20 (29897018-29895947)
               

               
               8-1080, gnl|Mm7|chr2 (152673988-152672929)
               


               
               74-498, gnl|bosTau2|chr10 (37470224-37469809)
               

               
               74-498, gnl|Hg17|chr15 (58084491-58084906)
               

               
               74-498, gnl|Mm7|chr9 (69792359-69791944)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1080, gnl|bosTau2|chr13 (44051988-44050905)
               

               
               8-1080, gnl|Hg17|chr20 (29897018-29895947)
               

               
               8-1080, gnl|Mm7|chr2 (152673988-152672929)
               


               
               74-498, gnl|bosTau2|chr10 (37470224-37469809)
               

               
               74-498, gnl|Hg17|chr15 (58084491-58084906)
               

               
               74-498, gnl|Mm7|chr9 (69792359-69791944)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ill (0.175593)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	48-247, - strand, RNAz p=0.863051
	728-1007, - strand, RNAz p=0.949858

	8-1080, gnl\|bosTau2\|chr13 (44051988-44050905)
	8-1080, gnl\|Hg17\|chr20 (29897018-29895947)
	8-1080, gnl\|Mm7\|chr2 (152673988-152672929)

	74-498, gnl\|bosTau2\|chr10 (37470224-37469809)
	74-498, gnl\|Hg17\|chr15 (58084491-58084906)
	74-498, gnl\|Mm7\|chr9 (69792359-69791944)

	ill (0.175593)
	nje (0.16592)
	pla (0.133672)
	ute (0.132784)
	eep (0.122564)
	eru (0.120048)
	jej (0.0989218)