Ss1.1-LyN1-MLN01B060101.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAAAATCTTTGCGTTTCCAGCTAAATCTCGACCGTGGGCCAAGGCACACTCGTTCTCC CGCGCGGGTAGCGGCGCCCAGGAGCACCGAGGCGGGACGGGAAGCTGCTTGCGCTCCCGG AGGACCCGGCCCCGGCTCCGCGCGTCCGGCCGCAACTGCGGGGGAAGGAGCCCCGAGCAG AGCAGCCCAGCCTCGCGCCGCCTGCGGAGCGAGCAGCCCCCATGCCTGCAGGTTACGGAG TAATGGGTGACGATGGTTCCATGGATTACAGTGTTCACGAGGCCTGGAATGAAGCCACCA ACGTTTACCTGGTTGTGATCCTTGTCAGCTTTGGGCTCTTCATGTATGCCAAGAGGAATA AAAGAAAAATTATGAGGATATTCAGTGTGCCGCCTACAGCAGAAACTTTGTCAGAGCCCA ACTTTTATGACACAATAAGTAAAATTCGTCTAAGACAGCAACTGGAAATGTATTCCATTT CAAGAAAGTATGATTATCAGCAGCCACAGAACCAAGCTGACAGTGTACAGCTGTCACTGG AATGAAATCTCAGAAAATGAGCAACAGAAGTGATCATTGTTCAAGCGTATGGTCTCCTCA TTCTACTAAATCATCAATGCCTTTTTTTTTAAAAAAAAAAATTGTCTCCAAAAAAATCAT CATACTTGTGACTTTTTCCTAGTTTTCTTTTTGTGTATTTTGTTTCGCTTTCTTAAATTG CATCTCCAAATCATTTGTTACATAAATTTAAAAGGCCTCAAAAGACCTGAATGCAGAGAT TCTGCCTATACCTAACGAGGATCGATGGTGATTTCACCATGGGAGGACGTTTCGTTTCTT CAGGATACAATCAGAAATAAAAACACATCCTTGGAAGCCAGAGTCTAGAGCTGAGGCCAC CTCGATTTGAACTTTTTTTGCCAAATTAAAAAATAAAAATCTTGGAGTTCCCATATGGCC CAGTGAGTTAAGGATCCAGTGTTATCACTGCAGCAGCTCAGGTCACTGCTGGGGCAAAGG TTCAATCCCTGGCCCGGGAACTTCCACATGCCGTGGATGCAGTCAAAAAAAAAAAAAACT AAACTAAACTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAAAATCTTTGCGTTTCCAGCTAAATCTCGACCGTGGGCCAAGGCACACTCGTTCTCC CGCGCGGGTAGCGGCGCCCAGGAGCACCGAGGCGGGACGGGAAGCTGCTTGCGCTCCCGG AGGACCCGGCCCCGGCTCCGCGCGTCCGGCCGCAACTGCGGGGGAAGGAGCCCCGAGCAG AGCAGCCCAGCCTCGCGCCGCCTGCGGAGCGAGCAGCCCCCATGCCTGCAGGTTACGGAG TAATGGGTGACGATGGTTCCATGGATTACAGTGTTCACGAGGCCTGGAATGAAGCCACCA ACGTTTACCTGGTTGTGATCCTTGTCAGCTTTGGGCTCTTCATGTATGCCAAGAGGAATA AAAGAAAAATTATGAGGATATTCAGTGTGCCGCCTACAGCAGAAACTTTGTCAGAGCCCA ACTTTTATGACACAATAAGTAAAATTCGTCTAAGACAGCAACTGGAAATGTATTCCATTT CAAGAAAGTATGATTATCAGCAGCCACAGAACCAAGCTGACAGTGTACAGCTGTCACTGG AATGAAATCTCAGAAAATGAGCAACAGAAGTGATCATTGTTCAAGCGTATGGTCTCCTCA TTCTACTAAATCATCAATGCCTTTTTTTTTAAAAAAAAAAATTGTCTCCAAAAAAATCAT CATACTTGTGACTTTTTCCTAGTTTTCTTTTTGTGTATTTTGTTTCGCTTTCTTAAATTG CATCTCCAAATCATTTGTTACATAAATTTAAAAGGCCTCAAAAGACCTGAATGCAGAGAT TCTGCCTATACCTAACGAGGATCGATGGTGATTTCACCATGGGAGGACGTTTCGTTTCTT CAGGATACAATCAGAAATAAAAACACATCCTTGGAAGCCAGAGTCTAGAGCTGAGGCCAC CTCGATTTGAACTTTTTTTGCCAAATTAAAAAATAAAAATCTTGGAGTTCCCATATGGCC CAGTGAGTTAAGGATCCAGTGTTATCACTGCAGCAGCTCAGGTCACTGCTGGGGCAAAGG TTCAATCCCTGGCCCGGGAACTTCCACATGCCGTGGATGCAGTCAAAAAAAAAAAAAACT AAACTAAACTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 354-480, gnl|bosTau2|chr27 (23862089-23862215) | |
| 354-480, gnl|canFam2|chr16 (26113776-26113638) | |
| 354-480, gnl|danRer3|chr14 (17085154-17085291) | |
| 354-480, gnl|dasNov1|scaffold_2135 (20932-20794) | |
| 354-480, gnl|echTel1|scaffold_301417 (7370-7232) | |
| 354-480, gnl|fr1|chrUn (108527558-108527422) | |
| 354-480, gnl|hg17|chr8 (42522952-42523090) | |
| 354-480, gnl|Hg17|chr8 (42522954-42523080) | |
| 354-480, gnl|loxAfr1|scaffold_2136 (94532-94670) | |
| 354-480, gnl|mm7|chr8 (21254488-21254350) | |
| 354-480, gnl|Mm7|chr8 (21254484-21254358) | |
| 354-480, gnl|monDom2|scaffold_1 (79388312-79388172) | |
| 354-480, gnl|oryCun1|scaffold_174041 (8487-8625) | |
| 354-480, gnl|panTro1|chr7 (43954091-43954229) | |
| 354-480, gnl|rheMac2|chr8 (43142006-43142144) | |
| 354-480, gnl|rn3|chr16 (74179642-74179780) | |
| 354-480, gnl|tetNig1|chrUn_random (35146802-35146938) | |
| 354-480, gnl|xenTro1|scaffold_35 (3122437-3122299) | |
| 483-941, gnl|bosTau2|chr27 (23868756-23869197) | |
| 483-941, gnl|Hg17|chr8 (42526846-42527259) | |
| 483-941, gnl|Mm7|chr8 (21246282-21245913) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 354-480, gnl|bosTau2|chr27 (23862089-23862215) | |
| 354-480, gnl|canFam2|chr16 (26113776-26113638) | |
| 354-480, gnl|danRer3|chr14 (17085154-17085291) | |
| 354-480, gnl|dasNov1|scaffold_2135 (20932-20794) | |
| 354-480, gnl|echTel1|scaffold_301417 (7370-7232) | |
| 354-480, gnl|fr1|chrUn (108527558-108527422) | |
| 354-480, gnl|hg17|chr8 (42522952-42523090) | |
| 354-480, gnl|Hg17|chr8 (42522954-42523080) | |
| 354-480, gnl|loxAfr1|scaffold_2136 (94532-94670) | |
| 354-480, gnl|mm7|chr8 (21254488-21254350) | |
| 354-480, gnl|Mm7|chr8 (21254484-21254358) | |
| 354-480, gnl|monDom2|scaffold_1 (79388312-79388172) | |
| 354-480, gnl|oryCun1|scaffold_174041 (8487-8625) | |
| 354-480, gnl|panTro1|chr7 (43954091-43954229) | |
| 354-480, gnl|rheMac2|chr8 (43142006-43142144) | |
| 354-480, gnl|rn3|chr16 (74179642-74179780) | |
| 354-480, gnl|tetNig1|chrUn_random (35146802-35146938) | |
| 354-480, gnl|xenTro1|scaffold_35 (3122437-3122299) | |
| 483-941, gnl|bosTau2|chr27 (23868756-23869197) | |
| 483-941, gnl|Hg17|chr8 (42526846-42527259) | |
| 483-941, gnl|Mm7|chr8 (21246282-21245913) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| pro (0.512033) | |
| mga (0.480615) | |
| cje (0.330469) | |
| spl (0.286369) | |
| che (0.272628) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| mas (0.210305) | |
| tes (0.207814) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| mga (0.480615) | |
| cje (0.330469) | |
| spl (0.286369) | |
| che (0.272628) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| mas (0.210305) | |
| tes (0.207814) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| sin (0.174948) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ldo (0.0970026) |