Ss1.1-LyN1-MLN01B070041.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGGAGAGACTCCGCGTGCTGCAACGCCGGCTGCCTGCCTCTGAGGCGGCGTGAGTCCC AACCAGCAGCTGCTTTTCGCTAGTGGTCCTTCCACGTTGAGTTCTGCGTGAAGATGGCAG ACGATCTTGGAGATGAGTGGTGGGAGAACCAGCCAGCAAGAGCAGCCAGCAGCCCAGAAG CATCAGATGGTGAAGGAGGAGGAGACACAGAAATGATGCAGCAGGAGACAGTTCCAGTTC CTGCCCTGTCAAAGAAAACCAAACAGCCTAAAGAATGTTTCTTGATACAACCAAAGGAAA CAAATGAGGATGCCACCAAGACCAGGAAGAGGAGAAAGAAGAAAATTACTGATATTCTTG CAAAATCAGAGCCTAAACCAGGGACACCTGAAGACCTGCAGAAGCTGATGAAGGACTATT ACAGTAGTAACCGCTCAGTGATTGAATTAGAAGAACTAAACATACCAGATTCCTGCTTTC TCAAGGCCAATGATTTGACTCACAGTCTTTCATCATACCTAAAAGAAATCTGCCCTAAAT GGGTGAAACTTCGGAAAAGCCACAGTGAGAAGAAATCAGTCCTGATGCTGATTATCTGCA GCTCTGCCATCCGAGCCTTGGAGCTCATTAGGTCGATGACTGCATTCAGAGGAGACAGCA AAGTTATGAAATTATTTGCAAAACACATAAAGGTCCAAGAGCAGGTAAAATTGCTGGAGA AGCGTGTGGTACACCTGGGTGTAGGAACTCCAGGAAGGATTAAAGAACTTGTTAAACAAG GCGGCCTTAATTTGAACCCCTTAAAGTTTCTGGTTTTTGACTGGAACTGGAGAGATCAGA AGCTAAGAAGGATGATGGACATTCCCGAGATAAGAAAGGAAGTTTTTGAACTTCTGGAAA TGGGAGTCCTCAATCTATGTAAGTCAGAATCTTTGAAGCTGGGCCTTTTCTAAGTTTAGG CCTGAAGAAAATTCCTGGTTTAATGGTGCGATTTGCTTGTTTATTGGCTCTGGCACACTG CAAGCATTCAGTAACTATCAGCTATTGTTTTGTTAAGTTGACTGTATCACTGATGCATCA TGGGGAATGGTGGGGATTTTTTGACAAAAATGAATCTGTCCTTTGCCAACTCCCCTGTAT AATAAAGTATCATTGGTTTGTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGGAGAGACTCCGCGTGCTGCAACGCCGGCTGCCTGCCTCTGAGGCGGCGTGAGTCCC AACCAGCAGCTGCTTTTCGCTAGTGGTCCTTCCACGTTGAGTTCTGCGTGAAGATGGCAG ACGATCTTGGAGATGAGTGGTGGGAGAACCAGCCAGCAAGAGCAGCCAGCAGCCCAGAAG CATCAGATGGTGAAGGAGGAGGAGACACAGAAATGATGCAGCAGGAGACAGTTCCAGTTC CTGCCCTGTCAAAGAAAACCAAACAGCCTAAAGAATGTTTCTTGATACAACCAAAGGAAA CAAATGAGGATGCCACCAAGACCAGGAAGAGGAGAAAGAAGAAAATTACTGATATTCTTG CAAAATCAGAGCCTAAACCAGGGACACCTGAAGACCTGCAGAAGCTGATGAAGGACTATT ACAGTAGTAACCGCTCAGTGATTGAATTAGAAGAACTAAACATACCAGATTCCTGCTTTC TCAAGGCCAATGATTTGACTCACAGTCTTTCATCATACCTAAAAGAAATCTGCCCTAAAT GGGTGAAACTTCGGAAAAGCCACAGTGAGAAGAAATCAGTCCTGATGCTGATTATCTGCA GCTCTGCCATCCGAGCCTTGGAGCTCATTAGGTCGATGACTGCATTCAGAGGAGACAGCA AAGTTATGAAATTATTTGCAAAACACATAAAGGTCCAAGAGCAGGTAAAATTGCTGGAGA AGCGTGTGGTACACCTGGGTGTAGGAACTCCAGGAAGGATTAAAGAACTTGTTAAACAAG GCGGCCTTAATTTGAACCCCTTAAAGTTTCTGGTTTTTGACTGGAACTGGAGAGATCAGA AGCTAAGAAGGATGATGGACATTCCCGAGATAAGAAAGGAAGTTTTTGAACTTCTGGAAA TGGGAGTCCTCAATCTATGTAAGTCAGAATCTTTGAAGCTGGGCCTTTTCTAAGTTTAGG CCTGAAGAAAATTCCTGGTTTAATGGTGCGATTTGCTTGTTTATTGGCTCTGGCACACTG CAAGCATTCAGTAACTATCAGCTATTGTTTTGTTAAGTTGACTGTATCACTGATGCATCA TGGGGAATGGTGGGGATTTTTTGACAAAAATGAATCTGTCCTTTGCCAACTCCCCTGTAT AATAAAGTATCATTGGTTTGTCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-177, gnl|bosTau2|chr1 (23541515-23541691) | |
| 1-177, gnl|canFam2|chr33 (9413361-9413661) | |
| 1-177, gnl|dasNov1|scaffold_387 (13867-13576) | |
| 1-177, gnl|echTel1|scaffold_321148 (234009-233712) | |
| 1-177, gnl|hg17|chr3 (101019289-101019582) | |
| 1-177, gnl|Hg17|chr3 (101019402-101019577) | |
| 1-177, gnl|loxAfr1|scaffold_1536 (35094-34805) | |
| 1-177, gnl|mm7|chr16 (57468404-57468116) | |
| 1-177, gnl|Mm7|chr16 (57468292-57468118) | |
| 1-177, gnl|oryCun1|scaffold_195693 (11502-11240) | |
| 1-177, gnl|panTro1|chr2 (102232729-102233022) | |
| 1-177, gnl|rheMac2|chr2 (20012601-20012895) | |
| 1-177, gnl|rn3|chr11 (43821478-43821767) | |
| 337-468, gnl|bosTau2|chr1 (23916118-23916249) | |
| 337-468, gnl|canFam2|chr33 (9769334-9769518) | |
| 337-468, gnl|danRer3|chr9 (28736153-28736311) | |
| 337-468, gnl|dasNov1|scaffold_595 (76582-76405) | |
| 337-468, gnl|fr1|chrUn (191374120-191373969) | |
| 337-468, gnl|galGal2|chr1 (78690181-78690019) | |
| 337-468, gnl|hg17|chr3 (101363812-101363991) | |
| 337-468, gnl|Hg17|chr3 (101363835-101363966) | |
| 337-468, gnl|mm7|chr16 (57177994-57177807) | |
| 337-468, gnl|Mm7|chr16 (57177961-57177830) | |
| 337-468, gnl|monDom2|scaffold_50 (10573506-10573333) | |
| 337-468, gnl|panTro1|chr2 (102597550-102597729) | |
| 337-468, gnl|rheMac2|chr2 (20369694-20369873) | |
| 337-468, gnl|rn3|chr11 (44110549-44110727) | |
| 337-468, gnl|tetNig1|chr2 (8450057-8449906) | |
| 529-633, gnl|bosTau2|chr1 (23922354-23922458) | |
| 529-633, gnl|canFam2|chr33 (9777167-9777299) | |
| 529-633, gnl|danRer3|chr9 (28738029-28738149) | |
| 529-633, gnl|dasNov1|scaffold_595 (72277-72144) | |
| 529-633, gnl|echTel1|scaffold_289105 (43694-43839) | |
| 529-633, gnl|fr1|chrUn (191373746-191373619) | |
| 529-633, gnl|galGal2|chr1 (78686376-78686254) | |
| 529-633, gnl|hg17|chr3 (101369258-101369391) | |
| 529-633, gnl|Hg17|chr3 (101369272-101369376) | |
| 529-633, gnl|loxAfr1|scaffold_17780 (57498-57358) | |
| 529-633, gnl|mm7|chr16 (57173039-57172906) | |
| 529-633, gnl|Mm7|chr16 (57173023-57172919) | |
| 529-633, gnl|monDom2|scaffold_50 (10562865-10562737) | |
| 529-633, gnl|panTro1|chr2 (102602994-102603127) | |
| 529-633, gnl|rheMac2|chr2 (20375013-20375146) | |
| 529-633, gnl|rn3|chr11 (44115469-44115602) | |
| 529-633, gnl|tetNig1|chr2 (8449713-8449591) | |
| 868-1164, gnl|bosTau2|chr1 (23935474-23935767) | |
| 868-1164, gnl|Hg17|chr3 (101379837-101380134) | |
| 868-1164, gnl|Mm7|chr16 (57163952-57163684) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-177, gnl|bosTau2|chr1 (23541515-23541691) | |
| 1-177, gnl|canFam2|chr33 (9413361-9413661) | |
| 1-177, gnl|dasNov1|scaffold_387 (13867-13576) | |
| 1-177, gnl|echTel1|scaffold_321148 (234009-233712) | |
| 1-177, gnl|hg17|chr3 (101019289-101019582) | |
| 1-177, gnl|Hg17|chr3 (101019402-101019577) | |
| 1-177, gnl|loxAfr1|scaffold_1536 (35094-34805) | |
| 1-177, gnl|mm7|chr16 (57468404-57468116) | |
| 1-177, gnl|Mm7|chr16 (57468292-57468118) | |
| 1-177, gnl|oryCun1|scaffold_195693 (11502-11240) | |
| 1-177, gnl|panTro1|chr2 (102232729-102233022) | |
| 1-177, gnl|rheMac2|chr2 (20012601-20012895) | |
| 1-177, gnl|rn3|chr11 (43821478-43821767) | |
| 337-468, gnl|bosTau2|chr1 (23916118-23916249) | |
| 337-468, gnl|canFam2|chr33 (9769334-9769518) | |
| 337-468, gnl|danRer3|chr9 (28736153-28736311) | |
| 337-468, gnl|dasNov1|scaffold_595 (76582-76405) | |
| 337-468, gnl|fr1|chrUn (191374120-191373969) | |
| 337-468, gnl|galGal2|chr1 (78690181-78690019) | |
| 337-468, gnl|hg17|chr3 (101363812-101363991) | |
| 337-468, gnl|Hg17|chr3 (101363835-101363966) | |
| 337-468, gnl|mm7|chr16 (57177994-57177807) | |
| 337-468, gnl|Mm7|chr16 (57177961-57177830) | |
| 337-468, gnl|monDom2|scaffold_50 (10573506-10573333) | |
| 337-468, gnl|panTro1|chr2 (102597550-102597729) | |
| 337-468, gnl|rheMac2|chr2 (20369694-20369873) | |
| 337-468, gnl|rn3|chr11 (44110549-44110727) | |
| 337-468, gnl|tetNig1|chr2 (8450057-8449906) | |
| 529-633, gnl|bosTau2|chr1 (23922354-23922458) | |
| 529-633, gnl|canFam2|chr33 (9777167-9777299) | |
| 529-633, gnl|danRer3|chr9 (28738029-28738149) | |
| 529-633, gnl|dasNov1|scaffold_595 (72277-72144) | |
| 529-633, gnl|echTel1|scaffold_289105 (43694-43839) | |
| 529-633, gnl|fr1|chrUn (191373746-191373619) | |
| 529-633, gnl|galGal2|chr1 (78686376-78686254) | |
| 529-633, gnl|hg17|chr3 (101369258-101369391) | |
| 529-633, gnl|Hg17|chr3 (101369272-101369376) | |
| 529-633, gnl|loxAfr1|scaffold_17780 (57498-57358) | |
| 529-633, gnl|mm7|chr16 (57173039-57172906) | |
| 529-633, gnl|Mm7|chr16 (57173023-57172919) | |
| 529-633, gnl|monDom2|scaffold_50 (10562865-10562737) | |
| 529-633, gnl|panTro1|chr2 (102602994-102603127) | |
| 529-633, gnl|rheMac2|chr2 (20375013-20375146) | |
| 529-633, gnl|rn3|chr11 (44115469-44115602) | |
| 529-633, gnl|tetNig1|chr2 (8449713-8449591) | |
| 868-1164, gnl|bosTau2|chr1 (23935474-23935767) | |
| 868-1164, gnl|Hg17|chr3 (101379837-101380134) | |
| 868-1164, gnl|Mm7|chr16 (57163952-57163684) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ssp (0.271039) | |
| col (0.195008) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.271039) | |
| col (0.195008) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) |