Non-Coding RNA Search

Ss1.1-LyN1-MLN01B080013.5

Sequence:


               
               CTTGGATGGACTTATTTATCACACAAGGAGCTACCATAAAGCGATTTGTGGTTCTCATAA
GCACTTTAGGGACATATAATTCTCTATTAATTATTTCCTGGCTACCTGTGTTGGGCTTTT
TACAACTCCCTTACTTAGATAGCTTTTATGAATATAGCTTGAAATTGTTGAGATATTCCA
ACACAACCACACTGGCTTCATGGGTAAGGGCGGATTGGATGTTTTATTCTTCACACCCAG
CCTTGTTTCTTAGTACATACCTTGGACACGGTTTACTAATCGATTACTTTGAGAAGAAGA
GACGGCGTAACAACAACAATGATGAAGTCAATGCCAATAACTTAGAATGGTTATCAAGTC
TGTGGGACTGGTACACCAGCTACCTCTTCCACCCAATTACTTCTTTTCAGAACTTTCCCG
TAGAGTCTGATTGGGATGAAGACCCCGACTTGTTCTTGGAGCGATTAGCTTTCCCTGACC
TTTGGCTTCACCCTCTGATACCAACTGATTATATAAAAAACTTGCCAATGTGGCGATTTA
AATGTCTTGGAGTCCAGTCGGAAGAGGAAATGTCAGAGGGTTCTCAAGATACTGAGCATG
AGTCAGACAGTGAGAGCACAGACACTCTGAGCAGTGAGAAGGAAGTATTTGAAGAGAAAC
AAAGCATAGTTCACAGTTCTCCGGGGCAAACAAGTCACAGTGATGCCGAGGCTTGTTCAT
GTGCCAGTAAATATTGTCAGACCACCGCTTATGAAAGGAAGGGGAGATCATACGGCTCAT
ATAGCAGTAATGAAGATATGGAACCAGATTGGTTAACTTGGCCTGCTGATATGCTGCACT
GTACTGAGTGTGTTGTTTGCCTAGAGAATTTCGAAAATGGATGTTTGCTAATGGGGTTGC
CTTGTGGTCATGTGTTCCATCAGAATTGCATTGTGATGTGGTTGGCTGGGGGCCGACACT
GTTGCCCTGTTTGCCGGTGGCCTTCTTATAAAAAAAAGCAGCCATATGCACAACACCAGT
CCTTGTCAAATGATGTCCCCTCTTAACCATGTGCAATTTGTCCTTTATAAGCTCTGCGTG
TCTTACAGCTTGCCTTTTTAATGTTAGTCACATGTTTTTGTGGTTTGACGTTTAGTTCAA
TGTTAGTGCAGTGACAGGAAATACACATTATGCTAATGTTGATGACAGTTATTTGGTTGC
CTTGAGTGTCAATTTGAATGCATACTTAATTGTAAAAATTTTTATTTACAACATTGCCAA
TTCAGAAGTTAATGTTTTTTTGTAAGCACAAAAGAAGTATGATAGAAATTTATCCTAGCA
AGACTTTACAAGGTAGGATCAAATTCTCATGGAATTGAGATGGTTTCTTATCCTAAATGT
TTCCTCCCTTTTTACAATCTCTGTCCAGCACCTCTTGGTTAAATAATGTATGCTCTGAGA
CCTGAAATTAAAACAGACCTATGAAATAAATTATTTTAAAACCAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGATGGACTTATTTATCACACAAGGAGCTACCATAAAGCGATTTGTGGTTCTCATAA
GCACTTTAGGGACATATAATTCTCTATTAATTATTTCCTGGCTACCTGTGTTGGGCTTTT
TACAACTCCCTTACTTAGATAGCTTTTATGAATATAGCTTGAAATTGTTGAGATATTCCA
ACACAACCACACTGGCTTCATGGGTAAGGGCGGATTGGATGTTTTATTCTTCACACCCAG
CCTTGTTTCTTAGTACATACCTTGGACACGGTTTACTAATCGATTACTTTGAGAAGAAGA
GACGGCGTAACAACAACAATGATGAAGTCAATGCCAATAACTTAGAATGGTTATCAAGTC
TGTGGGACTGGTACACCAGCTACCTCTTCCACCCAATTACTTCTTTTCAGAACTTTCCCG
TAGAGTCTGATTGGGATGAAGACCCCGACTTGTTCTTGGAGCGATTAGCTTTCCCTGACC
TTTGGCTTCACCCTCTGATACCAACTGATTATATAAAAAACTTGCCAATGTGGCGATTTA
AATGTCTTGGAGTCCAGTCGGAAGAGGAAATGTCAGAGGGTTCTCAAGATACTGAGCATG
AGTCAGACAGTGAGAGCACAGACACTCTGAGCAGTGAGAAGGAAGTATTTGAAGAGAAAC
AAAGCATAGTTCACAGTTCTCCGGGGCAAACAAGTCACAGTGATGCCGAGGCTTGTTCAT
GTGCCAGTAAATATTGTCAGACCACCGCTTATGAAAGGAAGGGGAGATCATACGGCTCAT
ATAGCAGTAATGAAGATATGGAACCAGATTGGTTAACTTGGCCTGCTGATATGCTGCACT
GTACTGAGTGTGTTGTTTGCCTAGAGAATTTCGAAAATGGATGTTTGCTAATGGGGTTGC
CTTGTGGTCATGTGTTCCATCAGAATTGCATTGTGATGTGGTTGGCTGGGGGCCGACACT
GTTGCCCTGTTTGCCGGTGGCCTTCTTATAAAAAAAAGCAGCCATATGCACAACACCAGT
CCTTGTCAAATGATGTCCCCTCTTAACCATGTGCAATTTGTCCTTTATAAGCTCTGCGTG
TCTTACAGCTTGCCTTTTTAATGTTAGTCACATGTTTTTGTGGTTTGACGTTTAGTTCAA
TGTTAGTGCAGTGACAGGAAATACACATTATGCTAATGTTGATGACAGTTATTTGGTTGC
CTTGAGTGTCAATTTGAATGCATACTTAATTGTAAAAATTTTTATTTACAACATTGCCAA
TTCAGAAGTTAATGTTTTTTTGTAAGCACAAAAGAAGTATGATAGAAATTTATCCTAGCA
AGACTTTACAAGGTAGGATCAAATTCTCATGGAATTGAGATGGTTTCTTATCCTAAATGT
TTCCTCCCTTTTTACAATCTCTGTCCAGCACCTCTTGGTTAAATAATGTATGCTCTGAGA
CCTGAAATTAAAACAGACCTATGAAATAAATTATTTTAAAACCAGAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55597303|ref|XP_515598.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55597303|ref|XP_515598.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               520-639, + strand, RNAz p=0.585862

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               520-639, + strand, RNAz p=0.585862

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1487, gnl|bosTau2|chr11 (35298337-35296850)
               

               
               1-1487, gnl|Hg17|chr2 (86743669-86742179)
               

               
               1-1487, gnl|Mm7|chr6 (71527330-71528814)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1487, gnl|bosTau2|chr11 (35298337-35296850)
               

               
               1-1487, gnl|Hg17|chr2 (86743669-86742179)
               

               
               1-1487, gnl|Mm7|chr6 (71527330-71528814)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fcc (0.39557)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-1487, gnl\|bosTau2\|chr11 (35298337-35296850)
	1-1487, gnl\|Hg17\|chr2 (86743669-86742179)
	1-1487, gnl\|Mm7\|chr6 (71527330-71528814)

	fcc (0.39557)
	cty (0.20816)
	tes (0.207814)
	hea (0.204499)
	aor (0.195274)
	ldo (0.194005)
	sto (0.179824)
	rec (0.17307)
	duo (0.172801)
	eli (0.151814)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	ese (0.126502)
	spc (0.113366)
	jej (0.0989218)