Ss1.1-LyN1-MLN01B080062.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCCCTGGACCTGTCCATCCGTCAGGCCCTCATCTTTTAACCAAACATCCGGTTTTCTC CTTTTTGCGTTCCGGCCGATCCCACCTTTCTTTCTAGTCCCTGGACCTGTCCATCCGTCA GGCCCTCATCTCTCCCACTCCTCCTCAGCGCGCGGGACTAGCGCGGGCTTCAGCGACGGG AGCCCTCGAGGGACATGGCAACTCCGGCGGCGCCGGCCGGCGGCGCCCGAAATGGGGCTG GCCCGGAATGGGGAGGATTCGATGAAAACATCCAGGGTGGGGGCTCAGCTGTGATTGACA TGGAGAACATGGATGATACTTCAGGTTCCAGCTTCGAGGATATGGGTGAGCTGCATCAGC GCCTGCGTGAGGAAGAAGTGGATGCTGATGCAGCTGCCGCTGAAGAAGAGGATGGGGAGT TTCTGGGCATGAAGGGCTTTAAGGGACAGCTGAGCCGGCAGGTGGCTGATCAGATGTGGC AGGCGGGGAAGAGACAAGCCTCTAGGGCCTTCAGCTTGTACGCCAACATCGACATCCTGA GACCCTACTTTGATGTGGAGCCTGCACAGGTGCGAAGCAGGCTCCTGGAGTCCATGATCC CCATCAAGATGGTCAACTTCCCTCAGAAAATCGCAGGTGAGCTCTATGGACCTCTCATGC TTGTTTTCACGCTGGTGGCCATTCTCCTCCATGGGATGAAGACGTCTGATACCATCATCC GGGAGGGCACCCTGATGGGCACAGCCATTGGCACCTGCTTCGGCTACTGGTTGGGCGTCT CGTCCTTCATTTACTTCCTTGCCTACCTGTGCAACGCCCAGATCACCATGCTCCAGATGC TGGCGCTGCTGGGCTATGGCCTCTTTGGACACTGCATTGTCCTGTTCATCACCTACAACA TCCATCTCCATGCGCTCTTCTACCTCTTCTGGCTGCTAGTGGGTGGACTGTCCACCCTGC GCATGGTGGCAGTGTTGGTGTCACGGACTGTGGGCCCCACACAGCGGCTGCTCCTCTGTG GCACCCTGGCAACCCTGCACATGCTCTTCCTGCTCTATCTGCATTTCGCCTACCACAAGG TGGTAGAGGGGATCCTGGACACGCTGGAGGGCCCCAATATCCCACCCATGCAGAGGGTAC CCAGAGACATCCCTGCTGCACTCCCTGCTGTTAGGCTTCCCACCACCGTGCTCAATGCCA CAGCCAAGGCTGTCGCGGTGACCCTACAGTCACACTGACCCCACCTGAAATCTGTGGCCA GCCCCTTTGCCCCCAGCTGTGATGCGGAGGAAGATTAAAGGACAGTACTGATGCCATGTG TCTCTTTGATGGGGTCTGCAGCTGCCACAGAGCTGTAGCCAACTCGAGCACCTCCCTGAT GCCTGTCGGGCTTCTGAAGAGCATAAGGCCAGGAGCTCCTGGCCAGGACTGCAGGGCTCT GCAGCCAGTGCAGAAAGTGGGTCAGCTCATCTGAGGCCCTCTCACCACCCACCCCTTCCT TCCTCTTTATCTCTCCCACATTGTCTTGCTAAATATAAACTTGGTAATTAAAATATTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCCCTGGACCTGTCCATCCGTCAGGCCCTCATCTTTTAACCAAACATCCGGTTTTCTC CTTTTTGCGTTCCGGCCGATCCCACCTTTCTTTCTAGTCCCTGGACCTGTCCATCCGTCA GGCCCTCATCTCTCCCACTCCTCCTCAGCGCGCGGGACTAGCGCGGGCTTCAGCGACGGG AGCCCTCGAGGGACATGGCAACTCCGGCGGCGCCGGCCGGCGGCGCCCGAAATGGGGCTG GCCCGGAATGGGGAGGATTCGATGAAAACATCCAGGGTGGGGGCTCAGCTGTGATTGACA TGGAGAACATGGATGATACTTCAGGTTCCAGCTTCGAGGATATGGGTGAGCTGCATCAGC GCCTGCGTGAGGAAGAAGTGGATGCTGATGCAGCTGCCGCTGAAGAAGAGGATGGGGAGT TTCTGGGCATGAAGGGCTTTAAGGGACAGCTGAGCCGGCAGGTGGCTGATCAGATGTGGC AGGCGGGGAAGAGACAAGCCTCTAGGGCCTTCAGCTTGTACGCCAACATCGACATCCTGA GACCCTACTTTGATGTGGAGCCTGCACAGGTGCGAAGCAGGCTCCTGGAGTCCATGATCC CCATCAAGATGGTCAACTTCCCTCAGAAAATCGCAGGTGAGCTCTATGGACCTCTCATGC TTGTTTTCACGCTGGTGGCCATTCTCCTCCATGGGATGAAGACGTCTGATACCATCATCC GGGAGGGCACCCTGATGGGCACAGCCATTGGCACCTGCTTCGGCTACTGGTTGGGCGTCT CGTCCTTCATTTACTTCCTTGCCTACCTGTGCAACGCCCAGATCACCATGCTCCAGATGC TGGCGCTGCTGGGCTATGGCCTCTTTGGACACTGCATTGTCCTGTTCATCACCTACAACA TCCATCTCCATGCGCTCTTCTACCTCTTCTGGCTGCTAGTGGGTGGACTGTCCACCCTGC GCATGGTGGCAGTGTTGGTGTCACGGACTGTGGGCCCCACACAGCGGCTGCTCCTCTGTG GCACCCTGGCAACCCTGCACATGCTCTTCCTGCTCTATCTGCATTTCGCCTACCACAAGG TGGTAGAGGGGATCCTGGACACGCTGGAGGGCCCCAATATCCCACCCATGCAGAGGGTAC CCAGAGACATCCCTGCTGCACTCCCTGCTGTTAGGCTTCCCACCACCGTGCTCAATGCCA CAGCCAAGGCTGTCGCGGTGACCCTACAGTCACACTGACCCCACCTGAAATCTGTGGCCA GCCCCTTTGCCCCCAGCTGTGATGCGGAGGAAGATTAAAGGACAGTACTGATGCCATGTG TCTCTTTGATGGGGTCTGCAGCTGCCACAGAGCTGTAGCCAACTCGAGCACCTCCCTGAT GCCTGTCGGGCTTCTGAAGAGCATAAGGCCAGGAGCTCCTGGCCAGGACTGCAGGGCTCT GCAGCCAGTGCAGAAAGTGGGTCAGCTCATCTGAGGCCCTCTCACCACCCACCCCTTCCT TCCTCTTTATCTCTCCCACATTGTCTTGCTAAATATAAACTTGGTAATTAAAATATTGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 273-1522, - strand, RNAz p=0.995249 | |
| 295-399, - strand, RNAz p=0.995144 | |
| 1128-1247, - strand, RNAz p=0.527691 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 273-1522, - strand, RNAz p=0.995249 | |
| 295-399, - strand, RNAz p=0.995144 | |
| 1128-1247, - strand, RNAz p=0.527691 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 273-473, gnl|bosTau2|chr23 (17327809-17327609) | |
| 273-473, gnl|canFam2|chr12 (14980815-14981036) | |
| 273-473, gnl|danRer3|chr13 (2259333-2259554) | |
| 273-473, gnl|echTel1|scaffold_308664 (46044-46265) | |
| 273-473, gnl|fr1|chrUn (94761159-94760934) | |
| 273-473, gnl|galGal2|chr3 (27217340-27217143) | |
| 273-473, gnl|hg17|chr6 (43591597-43591827) | |
| 273-473, gnl|Hg17|chr6 (43591814-43591605) | |
| 273-473, gnl|loxAfr1|scaffold_30945 (13308-13529) | |
| 273-473, gnl|mm7|chr17 (44378449-44378231) | |
| 273-473, gnl|Mm7|chr17 (44378242-44378442) | |
| 273-473, gnl|monDom2|scaffold_0 (198025102-198024881) | |
| 273-473, gnl|oryCun1|scaffold_94417 (5998-6219) | |
| 273-473, gnl|panTro1|chr5_random (28025842-28025612) | |
| 273-473, gnl|rheMac2|chr4 (43417068-43417298) | |
| 273-473, gnl|rn3|chr9 (10294567-10294785) | |
| 273-473, gnl|tetNig1|chr17 (7843037-7843259) | |
| 720-852, gnl|bosTau2|chr23 (17325637-17325505) | |
| 720-852, gnl|canFam2|chr12 (14978692-14978836) | |
| 720-852, gnl|canFam2|chr12 (14978699-14979106) | |
| 720-852, gnl|danRer3|chr13 (2255787-2255931) | |
| 720-852, gnl|danRer3|chr13 (2255794-2256129) | |
| 720-852, gnl|echTel1|scaffold_308664 (44049-44193) | |
| 720-852, gnl|echTel1|scaffold_308664 (44056-44467) | |
| 720-852, gnl|fr1|chrUn (94761884-94761740) | |
| 720-852, gnl|fr1|chrUn (94761877-94761552) | |
| 720-852, gnl|galGal2|chr3 (27218995-27218855) | |
| 720-852, gnl|hg17|chr4 (134853612-134854005) | |
| 720-852, gnl|hg17|chr6 (43588777-43588921) | |
| 720-852, gnl|Hg17|chr6 (43588916-43588784) | |
| 720-852, gnl|mm7|chr17 (44380339-44380195) | |
| 720-852, gnl|Mm7|chr17 (44380198-44380330) | |
| 720-852, gnl|mm7|chr17_random (2959597-2959217) | |
| 720-852, gnl|monDom2|scaffold_0 (198028078-198027934) | |
| 720-852, gnl|monDom2|scaffold_0 (198028071-198027611) | |
| 720-852, gnl|oryCun1|scaffold_94417 (3376-3520) | |
| 720-852, gnl|oryCun1|scaffold_94417 (3383-3786) | |
| 720-852, gnl|panTro1|chr3 (151833727-151834114) | |
| 720-852, gnl|panTro1|chr5_random (28028669-28028525) | |
| 720-852, gnl|rheMac2|chr4 (43413924-43414068) | |
| 720-852, gnl|rheMac2|chr5 (125931745-125932138) | |
| 720-852, gnl|rn3|chr9 (10292238-10292382) | |
| 720-852, gnl|rn3|chr9 (10292245-10292652) | |
| 720-852, gnl|tetNig1|chr17 (7842349-7842493) | |
| 720-852, gnl|tetNig1|chr17 (7842356-7842677) | |
| 720-852, gnl|xenTro1|scaffold_17815 (370-512) | |
| 1089-1560, gnl|bosTau2|chr23 (17324819-17324351) | |
| 1089-1560, gnl|canFam2|chr12 (14977496-14977803) | |
| 1089-1560, gnl|dasNov1|scaffold_4458 (35039-35324) | |
| 1089-1560, gnl|echTel1|scaffold_308664 (42913-43154) | |
| 1089-1560, gnl|hg17|chr2 (53359384-53359701) | |
| 1089-1560, gnl|Hg17|chr6 (43588032-43587560) | |
| 1089-1560, gnl|loxAfr1|scaffold_30945 (9741-10049) | |
| 1089-1560, gnl|mm7|chr17 (44381423-44381149) | |
| 1089-1560, gnl|Mm7|chr17 (44380969-44381412) | |
| 1089-1560, gnl|oryCun1|scaffold_94417 (2221-2509) | |
| 1089-1560, gnl|panTro1|chr12 (55470250-55470567) | |
| 1089-1560, gnl|rheMac2|chr13 (53469814-53470131) | |
| 1089-1560, gnl|rn3|chr9 (10291113-10291396) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 273-473, gnl|bosTau2|chr23 (17327809-17327609) | |
| 273-473, gnl|canFam2|chr12 (14980815-14981036) | |
| 273-473, gnl|danRer3|chr13 (2259333-2259554) | |
| 273-473, gnl|echTel1|scaffold_308664 (46044-46265) | |
| 273-473, gnl|fr1|chrUn (94761159-94760934) | |
| 273-473, gnl|galGal2|chr3 (27217340-27217143) | |
| 273-473, gnl|hg17|chr6 (43591597-43591827) | |
| 273-473, gnl|Hg17|chr6 (43591814-43591605) | |
| 273-473, gnl|loxAfr1|scaffold_30945 (13308-13529) | |
| 273-473, gnl|mm7|chr17 (44378449-44378231) | |
| 273-473, gnl|Mm7|chr17 (44378242-44378442) | |
| 273-473, gnl|monDom2|scaffold_0 (198025102-198024881) | |
| 273-473, gnl|oryCun1|scaffold_94417 (5998-6219) | |
| 273-473, gnl|panTro1|chr5_random (28025842-28025612) | |
| 273-473, gnl|rheMac2|chr4 (43417068-43417298) | |
| 273-473, gnl|rn3|chr9 (10294567-10294785) | |
| 273-473, gnl|tetNig1|chr17 (7843037-7843259) | |
| 720-852, gnl|bosTau2|chr23 (17325637-17325505) | |
| 720-852, gnl|canFam2|chr12 (14978692-14978836) | |
| 720-852, gnl|canFam2|chr12 (14978699-14979106) | |
| 720-852, gnl|danRer3|chr13 (2255787-2255931) | |
| 720-852, gnl|danRer3|chr13 (2255794-2256129) | |
| 720-852, gnl|echTel1|scaffold_308664 (44049-44193) | |
| 720-852, gnl|echTel1|scaffold_308664 (44056-44467) | |
| 720-852, gnl|fr1|chrUn (94761884-94761740) | |
| 720-852, gnl|fr1|chrUn (94761877-94761552) | |
| 720-852, gnl|galGal2|chr3 (27218995-27218855) | |
| 720-852, gnl|hg17|chr4 (134853612-134854005) | |
| 720-852, gnl|hg17|chr6 (43588777-43588921) | |
| 720-852, gnl|Hg17|chr6 (43588916-43588784) | |
| 720-852, gnl|mm7|chr17 (44380339-44380195) | |
| 720-852, gnl|Mm7|chr17 (44380198-44380330) | |
| 720-852, gnl|mm7|chr17_random (2959597-2959217) | |
| 720-852, gnl|monDom2|scaffold_0 (198028078-198027934) | |
| 720-852, gnl|monDom2|scaffold_0 (198028071-198027611) | |
| 720-852, gnl|oryCun1|scaffold_94417 (3376-3520) | |
| 720-852, gnl|oryCun1|scaffold_94417 (3383-3786) | |
| 720-852, gnl|panTro1|chr3 (151833727-151834114) | |
| 720-852, gnl|panTro1|chr5_random (28028669-28028525) | |
| 720-852, gnl|rheMac2|chr4 (43413924-43414068) | |
| 720-852, gnl|rheMac2|chr5 (125931745-125932138) | |
| 720-852, gnl|rn3|chr9 (10292238-10292382) | |
| 720-852, gnl|rn3|chr9 (10292245-10292652) | |
| 720-852, gnl|tetNig1|chr17 (7842349-7842493) | |
| 720-852, gnl|tetNig1|chr17 (7842356-7842677) | |
| 720-852, gnl|xenTro1|scaffold_17815 (370-512) | |
| 1089-1560, gnl|bosTau2|chr23 (17324819-17324351) | |
| 1089-1560, gnl|canFam2|chr12 (14977496-14977803) | |
| 1089-1560, gnl|dasNov1|scaffold_4458 (35039-35324) | |
| 1089-1560, gnl|echTel1|scaffold_308664 (42913-43154) | |
| 1089-1560, gnl|hg17|chr2 (53359384-53359701) | |
| 1089-1560, gnl|Hg17|chr6 (43588032-43587560) | |
| 1089-1560, gnl|loxAfr1|scaffold_30945 (9741-10049) | |
| 1089-1560, gnl|mm7|chr17 (44381423-44381149) | |
| 1089-1560, gnl|Mm7|chr17 (44380969-44381412) | |
| 1089-1560, gnl|oryCun1|scaffold_94417 (2221-2509) | |
| 1089-1560, gnl|panTro1|chr12 (55470250-55470567) | |
| 1089-1560, gnl|rheMac2|chr13 (53469814-53470131) | |
| 1089-1560, gnl|rn3|chr9 (10291113-10291396) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| col (0.585023) | |
| nmm (0.531209) | |
| cov (0.396458) | |
| nje (0.33184) | |
| cag (0.302389) | |
| pty (0.285429) | |
| ece (0.229305) | |
| jca (0.22792) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nco (0.161734) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.585023) | |
| nmm (0.531209) | |
| cov (0.396458) | |
| nje (0.33184) | |
| cag (0.302389) | |
| pty (0.285429) | |
| ece (0.229305) | |
| jca (0.22792) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nco (0.161734) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |