Non-Coding RNA Search

Ss1.1-LyN1-MLN01B090022.5

Sequence:


               
               CGGCGGCCGCCATTACAGAGCCGAGCTCCAAGGCTAGAGCGAGCGGAGGAGGTCAGTGGC
CGGTAGCCGAACACCGAGGGGCGAGTCAACCGGGCAGCGCTACTGCCGAGCAGCCTTCAG
CAGCCACACAAGTACCCCGGGGGCCGACGGCAGCGTGTGCGTGTGGCCCGTGTGCGGGCG
GCGGCGCGGGAGTAGCGCGGAGCGGCAGCCGGTTCGGGCGGGTGGCATCATGGACGAGAA
GGTGTTCACTAAGGAGCTGGACCAGTGGATCGAGCAGCTGAATGAGTGCAAGCAGCTGTC
CGAGTCCCAGGTCAAGAGCCTCTGCGAGAAGGCTAAAGAAATCCTGACAAAAGAATCCAA
CGTGCAAGAGGTTCGATGTCCAGTCACTGTCTGTGGAGATGTGCACGGGCAATTTCATGA
TCTCATGGAACTGTTTAGAATTGGTGGCAAATCACCAGATACGAATTACCTGTTTATGGG
AGATTACGTTGACAGAGGATATTATTCCGTTGAAACAGTTACTCTGCTTGTAGCTCTTAA
GGTTCGTTACCGTGAACGCATCACCATTCTTCGAGGAAATCATGAGAGCAGACAGATCAC
ACAAGTATATGGTTTCTATGATGAGTGTTTAAGGAAATATGGAAATGCAAATGTTTGGAA
ATATTTTACAGATCTTTTTGATTATCTTCCTCTCACTGCATTAGTGGATGGGCAGATCTT
CTGTCTACATGGTGGCCTCTCACCATCCATAGATACACTGGATCACATCAGAGCACTTGA
TCGCCTGCAAGAAGTTCCCCATGAGGGTCCAATGTGTGACTTGCTGTGGTCAGATCCAGA
TGACCGTGGAGGTTGGGGTATATCTCCTCGAGGAGCTGGTTACACTTTTGGGCAAGATAT
TTCCGAGACATTTAATCATGCCAATGGCCTCACGTTGGTGTCCAGAGCTCATCAGCTCGT
GATGGAGGGATATAACTGGTGCCATGACCGGAATGTAGTAACGATTTTCAGTGCTCCAAA
CTATTGTTACCGTTGTGGGAACCAAGCTGCAATCATGGAACTTGATGATACTCTAAAATA
CTCTTTCTTGCAGTTTGACCCAGCACCTCGCAGAGGCGAGCCACACGTTACTCGTCGTAC
CCCAGACTACTTCCTGTAATGAAATTTTAAACTTGTACAGTATTGCCATGAACCATATAT
TGACCTAATGGAGATGGGAAGAGCAACAGTAACTCCACAAAGTGTCAGAGAATAGTTAAC
ATTCAAAAAAACTTGTTTTCACACGGACCAAAAAGATGTGCCATATAAAATACAAAGCCT
CTTGTCATCAACAGCCGTGACCACTTTAGAATGAACCAGTCCATTGCATGCTGAAGCGAC
ATTGTTGGTCAAGAAACCAGTTTCTGGCATAGCGCTACTTGTAGTTACTTTGCTTTCTCT
GAGAGACTGCAGATAATAAGATGTAAACATTAACACCTCGTGAATACAATTTAACTTCCA
TTTAGCTATAGCTTTACTCAGCATGACTGTAGATAAGAATAGCAGCAAACAATCATTGGA
GCTTAATGAACATTTTTAAAAATAAGTACCAAGGCCTCCCCTCTACTTGTGAGTTTCGAA
ATTGTTTTGTTTATTTTCAGGGATACCGTTTAATTTAATTGTATGATTTGTCTGCACTCA
GTTTATTTCCTTTCTCAAATCTCAGCCTCATGTTGTTCTTTGTTATTGTCAGAACCTGGT
GAGTTGTTTTGAACAGAACTGTTTTTTTCTTCCTCCTGTAAGACGATGTTACTGCACAAG
AGCACTGCAGTGTTTTTCATAATAAACTTGTGAACTAAGAACTGAGAAAGTCAAATTTTA
ATTGTATCGATGGGCAAGACTGGTGCTGTTTATTTAATGATAAATCAAGTGATAAATTTT
AGGATTTGTAGAATTCTAGGTGAAAAATAAAAATCAAGGCCACTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGGCCGCCATTACAGAGCCGAGCTCCAAGGCTAGAGCGAGCGGAGGAGGTCAGTGGC
CGGTAGCCGAACACCGAGGGGCGAGTCAACCGGGCAGCGCTACTGCCGAGCAGCCTTCAG
CAGCCACACAAGTACCCCGGGGGCCGACGGCAGCGTGTGCGTGTGGCCCGTGTGCGGGCG
GCGGCGCGGGAGTAGCGCGGAGCGGCAGCCGGTTCGGGCGGGTGGCATCATGGACGAGAA
GGTGTTCACTAAGGAGCTGGACCAGTGGATCGAGCAGCTGAATGAGTGCAAGCAGCTGTC
CGAGTCCCAGGTCAAGAGCCTCTGCGAGAAGGCTAAAGAAATCCTGACAAAAGAATCCAA
CGTGCAAGAGGTTCGATGTCCAGTCACTGTCTGTGGAGATGTGCACGGGCAATTTCATGA
TCTCATGGAACTGTTTAGAATTGGTGGCAAATCACCAGATACGAATTACCTGTTTATGGG
AGATTACGTTGACAGAGGATATTATTCCGTTGAAACAGTTACTCTGCTTGTAGCTCTTAA
GGTTCGTTACCGTGAACGCATCACCATTCTTCGAGGAAATCATGAGAGCAGACAGATCAC
ACAAGTATATGGTTTCTATGATGAGTGTTTAAGGAAATATGGAAATGCAAATGTTTGGAA
ATATTTTACAGATCTTTTTGATTATCTTCCTCTCACTGCATTAGTGGATGGGCAGATCTT
CTGTCTACATGGTGGCCTCTCACCATCCATAGATACACTGGATCACATCAGAGCACTTGA
TCGCCTGCAAGAAGTTCCCCATGAGGGTCCAATGTGTGACTTGCTGTGGTCAGATCCAGA
TGACCGTGGAGGTTGGGGTATATCTCCTCGAGGAGCTGGTTACACTTTTGGGCAAGATAT
TTCCGAGACATTTAATCATGCCAATGGCCTCACGTTGGTGTCCAGAGCTCATCAGCTCGT
GATGGAGGGATATAACTGGTGCCATGACCGGAATGTAGTAACGATTTTCAGTGCTCCAAA
CTATTGTTACCGTTGTGGGAACCAAGCTGCAATCATGGAACTTGATGATACTCTAAAATA
CTCTTTCTTGCAGTTTGACCCAGCACCTCGCAGAGGCGAGCCACACGTTACTCGTCGTAC
CCCAGACTACTTCCTGTAATGAAATTTTAAACTTGTACAGTATTGCCATGAACCATATAT
TGACCTAATGGAGATGGGAAGAGCAACAGTAACTCCACAAAGTGTCAGAGAATAGTTAAC
ATTCAAAAAAACTTGTTTTCACACGGACCAAAAAGATGTGCCATATAAAATACAAAGCCT
CTTGTCATCAACAGCCGTGACCACTTTAGAATGAACCAGTCCATTGCATGCTGAAGCGAC
ATTGTTGGTCAAGAAACCAGTTTCTGGCATAGCGCTACTTGTAGTTACTTTGCTTTCTCT
GAGAGACTGCAGATAATAAGATGTAAACATTAACACCTCGTGAATACAATTTAACTTCCA
TTTAGCTATAGCTTTACTCAGCATGACTGTAGATAAGAATAGCAGCAAACAATCATTGGA
GCTTAATGAACATTTTTAAAAATAAGTACCAAGGCCTCCCCTCTACTTGTGAGTTTCGAA
ATTGTTTTGTTTATTTTCAGGGATACCGTTTAATTTAATTGTATGATTTGTCTGCACTCA
GTTTATTTCCTTTCTCAAATCTCAGCCTCATGTTGTTCTTTGTTATTGTCAGAACCTGGT
GAGTTGTTTTGAACAGAACTGTTTTTTTCTTCCTCCTGTAAGACGATGTTACTGCACAAG
AGCACTGCAGTGTTTTTCATAATAAACTTGTGAACTAAGAACTGAGAAAGTCAAATTTTA
ATTGTATCGATGGGCAAGACTGGTGCTGTTTATTTAATGATAAATCAAGTGATAAATTTT
AGGATTTGTAGAATTCTAGGTGAAAAATAAAAATCAAGGCCACTAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47523790|ref|NP_999531.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47523790|ref|NP_999531.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               2-118, - strand, RNAz p=0.853424
               

               
               239-358, - strand, RNAz p=0.99302
               

               
               981-1324, - strand, RNAz p=0.959884

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-118, - strand, RNAz p=0.853424
               

               
               239-358, - strand, RNAz p=0.99302
               

               
               981-1324, - strand, RNAz p=0.959884

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               2-1324, gnl|bosTau2|chrX (24741164-24742469)
               


               
               176-1159, gnl|bosTau2|chr18 (45975641-45974656)
               

               
               176-1159, gnl|Hg17|chr16 (31724694-31725524)
               

               
               176-1159, gnl|Mm7|chr8 (32378519-32387063)
               


               
               701-895, gnl|bosTau2|chr11 (77005273-77005078)
               

               
               701-895, gnl|Hg17|chr9 (124995575-124995380)
               

               
               701-895, gnl|Mm7|chr2 (39207183-39206988)
               


               
               1806-1921, gnl|bosTau2|chr7 (31254724-31254839)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1324, gnl|bosTau2|chrX (24741164-24742469)
               


               
               176-1159, gnl|bosTau2|chr18 (45975641-45974656)
               

               
               176-1159, gnl|Hg17|chr16 (31724694-31725524)
               

               
               176-1159, gnl|Mm7|chr8 (32378519-32387063)
               


               
               701-895, gnl|bosTau2|chr11 (77005273-77005078)
               

               
               701-895, gnl|Hg17|chr9 (124995575-124995380)
               

               
               701-895, gnl|Mm7|chr2 (39207183-39206988)
               


               
               1806-1921, gnl|bosTau2|chr7 (31254724-31254839)

Expressed library(ies): 64 entry(ies)

More info

Expressed library(ies): 64 entry(ies)

Help | Less info


               
               cki (1.81758)
               

               
               fco (1.41487)
               

               
               mga (1.28164)
               

               
               sug (1.14562)
               

               
               sin (1.04969)
               

               
               spc (1.02029)
               

               
               vin (0.997672)
               

               
               ssp (0.948638)
               

               
               isp (0.902256)
               

               
               che (0.817884)
               

               
               aor (0.781097)
               

               
               thg (0.760746)
               

               
               bfe (0.749288)
               

               
               lyg (0.665513)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               ecc (0.575175)
               

               
               nlu (0.575043)
               

               
               rec (0.519211)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               mcp (0.511945)
               

               
               cut (0.509771)
               

               
               nje (0.49776)
               

               
               jej (0.494609)
               

               
               liv (0.438853)
               

               
               spl (0.429553)
               

               
               cst (0.420109)
               

               
               kid (0.389206)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 64 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (1.81758)
               

               
               fco (1.41487)
               

               
               mga (1.28164)
               

               
               sug (1.14562)
               

               
               sin (1.04969)
               

               
               spc (1.02029)
               

               
               vin (0.997672)
               

               
               ssp (0.948638)
               

               
               isp (0.902256)
               

               
               che (0.817884)
               

               
               aor (0.781097)
               

               
               thg (0.760746)
               

               
               bfe (0.749288)
               

               
               lyg (0.665513)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               ecc (0.575175)
               

               
               nlu (0.575043)
               

               
               rec (0.519211)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               mcp (0.511945)
               

               
               cut (0.509771)
               

               
               nje (0.49776)
               

               
               jej (0.494609)
               

               
               liv (0.438853)
               

               
               spl (0.429553)
               

               
               cst (0.420109)
               

               
               kid (0.389206)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	2-118, - strand, RNAz p=0.853424
	239-358, - strand, RNAz p=0.99302
	981-1324, - strand, RNAz p=0.959884

	2-1324, gnl\|bosTau2\|chrX (24741164-24742469)

	176-1159, gnl\|bosTau2\|chr18 (45975641-45974656)
	176-1159, gnl\|Hg17\|chr16 (31724694-31725524)
	176-1159, gnl\|Mm7\|chr8 (32378519-32387063)

	701-895, gnl\|bosTau2\|chr11 (77005273-77005078)
	701-895, gnl\|Hg17\|chr9 (124995575-124995380)
	701-895, gnl\|Mm7\|chr2 (39207183-39206988)

	1806-1921, gnl\|bosTau2\|chr7 (31254724-31254839)

	cki (1.81758)
	fco (1.41487)
	mga (1.28164)
	sug (1.14562)
	sin (1.04969)
	spc (1.02029)
	vin (0.997672)
	ssp (0.948638)
	isp (0.902256)
	che (0.817884)
	aor (0.781097)
	thg (0.760746)
	bfe (0.749288)
	lyg (0.665513)
	hea (0.613497)
	sme (0.610874)
	ecc (0.575175)
	nlu (0.575043)
	rec (0.519211)
	ova (0.516529)
	pro (0.512033)
	mcp (0.511945)
	cut (0.509771)
	nje (0.49776)
	jej (0.494609)
	liv (0.438853)
	spl (0.429553)
	cst (0.420109)
	kid (0.389206)
	sag (0.36543)
	gul (0.355177)
	eye (0.341006)
	fhi (0.339155)
	nco (0.323468)
	tbr (0.308356)
	cte (0.29274)
	hyp (0.285673)
	ute (0.265569)
	ret (0.257467)
	bla (0.248694)
	cbe (0.239234)
	pgl (0.236967)
	cbl (0.229595)
	ece (0.229305)
	fli (0.202881)
	fcc (0.197785)
	nep (0.183925)
	mgm (0.180343)
	ill (0.175593)
	csp (0.161186)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	hlv (0.139256)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	tra (0.123092)
	eep (0.122564)
	ebs (0.118301)
	cty (0.10408)
	ldo (0.0970026)