Ss1.1-LyN1-MLN01B090098.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATTTTTGTCAGGTTAGAAATGAAGATCATCAAGGGCTCCGGCGGCACCCCGAAGCTCAG CTACACGGGGCGGGACGACCGGCACTTTGTGCCCACGGGCCTCTACATCGTCAGGACAGT GAATGAGCCATGGACTATGGCATTCAGCAAAAGCTTCAAGAGGAAGTTCTTCTACAACAA GAAAACCAAGGACTCTACTTTTGACCTCCCTGCAGAGGCCATTGCTCCATTTCACATCTG CTACTTTGGCCGGCTCTTCTGGGAGTGGGGGGATGGCATCCGTGTGCACGACTCCCAGAA GCCCCAGGACCCAGACAAGCTGTCCAAGGAGGATGTCCTCTCCTTCATCCAGACACACAG CGCCTGAGGGCCTGGGCCCCGCCCCGCGGATGCCCTGTCATTGCCTGCGCCTGGGCCCAC AGTGCTGCTTCCCTCCCCTTCTCAGAAAGGGATGGGAGGCAGCGCCTCTCTCTCTCCGAG AGCTCAGTTGGGGCCCTCAGAGGACACTCACATGTTCCTTCTGGGACACTTTTGGACTCC TCTCTCCGGAGACCTGCCAGGATCAGCCTGAAGGATGTAGCTCCGACAGCAGGTTTGAGG CTGGGGCCTGTGGCCCGTGGCCCGTGGGGCCAGTGGAGGTCACGTCAGTGCAGTGGGGCT TCGGCTCTGTCCTTCTCTCCTGTATTCTGTAGACTCACTTTTCTGAGTTTGTGCACTGCC CCAAGGGCGGCCATGCCCCTGCTTTGCTCAACTTTTTACTGGGCCAACCCTGAGTGGGAG GAGGCCCACCATTGTGAGCTGGTCAGGAGCCGCTGCTGTACACATCAAGGTTTTGTTTCT TTGAACTTGCTGTTTTGATGCCAAGTTGGAAAAGATTTTGTCTCCCCCCGCTTCCCTCCC TGTCCTGGTCTTCCTTGGAGTTCTTCTCAGCCCAGAGCTCTGCCAGTCCTGCAGGCCGGG AAGGGAGGCGTGTGGACCCCACGTCAGGATGCAGATAGCACTGTCTAGTGGGGAGTGTGA CTGCTTCCTGGGTCCCACTCCCTCTAACGTGAACAGCTTAGAGGCGGAGGAAGCAACCTT GAAGACCTGCTTTTTTCTATGCCTGGCAGCAGAGGCCCTGCCGTAACAGAGGGTACCTCC GGGGCTTGGCCGCACCCCTGCCAATCATGGCACCCCATTTGCCCCAGCTACCTTGCTACC CTCCCCCTCCTTTTTCTTCCCTTATAACAGAAGGCACAGTTGCTTTTGTCTTTTTGTGGT CACTCCATTTCCTCTATCTTGGTGGGCGGAGGGGGAAGAGGGGAAGCTGGGCAGTAGCTT TGGGTAGGGGAGGGAACCTGTGGTGGTTTTTAATGGGAAATATCTCTCAGAGATGCTCTT ATGGGCTCCCCCGGCCTCATCCCAGTGCTAGACTGGTTTCCATGGAGATAGGGCATCAAG GCTCCAGTGAGGTTGGAACTGACTCCACCTCAGGGGTCTCCAGCCAGCATCCAGCCCCTC CCCCCAGGTTGGTAGCAGCACCATTGAGATGCTGTATTTCCACCCAGTTCTGGGTATATC AGTGTGTCTTGCAGAATCTTGGATCATTAAAGATAAACATATTTTTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATTTTTGTCAGGTTAGAAATGAAGATCATCAAGGGCTCCGGCGGCACCCCGAAGCTCAG CTACACGGGGCGGGACGACCGGCACTTTGTGCCCACGGGCCTCTACATCGTCAGGACAGT GAATGAGCCATGGACTATGGCATTCAGCAAAAGCTTCAAGAGGAAGTTCTTCTACAACAA GAAAACCAAGGACTCTACTTTTGACCTCCCTGCAGAGGCCATTGCTCCATTTCACATCTG CTACTTTGGCCGGCTCTTCTGGGAGTGGGGGGATGGCATCCGTGTGCACGACTCCCAGAA GCCCCAGGACCCAGACAAGCTGTCCAAGGAGGATGTCCTCTCCTTCATCCAGACACACAG CGCCTGAGGGCCTGGGCCCCGCCCCGCGGATGCCCTGTCATTGCCTGCGCCTGGGCCCAC AGTGCTGCTTCCCTCCCCTTCTCAGAAAGGGATGGGAGGCAGCGCCTCTCTCTCTCCGAG AGCTCAGTTGGGGCCCTCAGAGGACACTCACATGTTCCTTCTGGGACACTTTTGGACTCC TCTCTCCGGAGACCTGCCAGGATCAGCCTGAAGGATGTAGCTCCGACAGCAGGTTTGAGG CTGGGGCCTGTGGCCCGTGGCCCGTGGGGCCAGTGGAGGTCACGTCAGTGCAGTGGGGCT TCGGCTCTGTCCTTCTCTCCTGTATTCTGTAGACTCACTTTTCTGAGTTTGTGCACTGCC CCAAGGGCGGCCATGCCCCTGCTTTGCTCAACTTTTTACTGGGCCAACCCTGAGTGGGAG GAGGCCCACCATTGTGAGCTGGTCAGGAGCCGCTGCTGTACACATCAAGGTTTTGTTTCT TTGAACTTGCTGTTTTGATGCCAAGTTGGAAAAGATTTTGTCTCCCCCCGCTTCCCTCCC TGTCCTGGTCTTCCTTGGAGTTCTTCTCAGCCCAGAGCTCTGCCAGTCCTGCAGGCCGGG AAGGGAGGCGTGTGGACCCCACGTCAGGATGCAGATAGCACTGTCTAGTGGGGAGTGTGA CTGCTTCCTGGGTCCCACTCCCTCTAACGTGAACAGCTTAGAGGCGGAGGAAGCAACCTT GAAGACCTGCTTTTTTCTATGCCTGGCAGCAGAGGCCCTGCCGTAACAGAGGGTACCTCC GGGGCTTGGCCGCACCCCTGCCAATCATGGCACCCCATTTGCCCCAGCTACCTTGCTACC CTCCCCCTCCTTTTTCTTCCCTTATAACAGAAGGCACAGTTGCTTTTGTCTTTTTGTGGT CACTCCATTTCCTCTATCTTGGTGGGCGGAGGGGGAAGAGGGGAAGCTGGGCAGTAGCTT TGGGTAGGGGAGGGAACCTGTGGTGGTTTTTAATGGGAAATATCTCTCAGAGATGCTCTT ATGGGCTCCCCCGGCCTCATCCCAGTGCTAGACTGGTTTCCATGGAGATAGGGCATCAAG GCTCCAGTGAGGTTGGAACTGACTCCACCTCAGGGGTCTCCAGCCAGCATCCAGCCCCTC CCCCCAGGTTGGTAGCAGCACCATTGAGATGCTGTATTTCCACCCAGTTCTGGGTATATC AGTGTGTCTTGCAGAATCTTGGATCATTAAAGATAAACATATTTTTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1095-1555, - strand, RNAz p=0.999077 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1095-1555, - strand, RNAz p=0.999077 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 11-125, gnl|bosTau2|chr23 (10433510-10433624) | |
| 11-125, gnl|canFam2|chr12 (9502514-9502639) | |
| 11-125, gnl|danRer3|chr23 (50106296-50106418) | |
| 11-125, gnl|dasNov1|scaffold_58746 (10006-10131) | |
| 11-125, gnl|echTel1|scaffold_292986 (1658-1783) | |
| 11-125, gnl|fr1|chrUn (53272202-53272080) | |
| 11-125, gnl|galGal2|chr3 (26486236-26486111) | |
| 11-125, gnl|hg17|chr6 (37554161-37554286) | |
| 11-125, gnl|Hg17|chr6 (37554161-37554275) | |
| 11-125, gnl|loxAfr1|scaffold_40665 (12625-12500) | |
| 11-125, gnl|mm7|chr17 (27893365-27893490) | |
| 11-125, gnl|Mm7|chr17 (27893365-27893479) | |
| 11-125, gnl|monDom2|scaffold_42 (8669185-8669065) | |
| 11-125, gnl|oryCun1|scaffold_140052 (7074-6951) | |
| 11-125, gnl|panTro1|chr5 (38042447-38042572) | |
| 11-125, gnl|rheMac2|chr4 (37255988-37256113) | |
| 11-125, gnl|rn3|chr20 (8012255-8012380) | |
| 11-125, gnl|tetNig1|chr14 (2613197-2613076) | |
| 11-125, gnl|xenTro1|scaffold_1268 (188112-187987) | |
| 235-384, gnl|bosTau2|chr23 (10434892-10435041) | |
| 235-384, gnl|Hg17|chr6 (37555767-37555917) | |
| 235-384, gnl|Mm7|chr17 (27894550-27894698) | |
| 536-1608, gnl|bosTau2|chr23 (10435318-10436391) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-125, gnl|bosTau2|chr23 (10433510-10433624) | |
| 11-125, gnl|canFam2|chr12 (9502514-9502639) | |
| 11-125, gnl|danRer3|chr23 (50106296-50106418) | |
| 11-125, gnl|dasNov1|scaffold_58746 (10006-10131) | |
| 11-125, gnl|echTel1|scaffold_292986 (1658-1783) | |
| 11-125, gnl|fr1|chrUn (53272202-53272080) | |
| 11-125, gnl|galGal2|chr3 (26486236-26486111) | |
| 11-125, gnl|hg17|chr6 (37554161-37554286) | |
| 11-125, gnl|Hg17|chr6 (37554161-37554275) | |
| 11-125, gnl|loxAfr1|scaffold_40665 (12625-12500) | |
| 11-125, gnl|mm7|chr17 (27893365-27893490) | |
| 11-125, gnl|Mm7|chr17 (27893365-27893479) | |
| 11-125, gnl|monDom2|scaffold_42 (8669185-8669065) | |
| 11-125, gnl|oryCun1|scaffold_140052 (7074-6951) | |
| 11-125, gnl|panTro1|chr5 (38042447-38042572) | |
| 11-125, gnl|rheMac2|chr4 (37255988-37256113) | |
| 11-125, gnl|rn3|chr20 (8012255-8012380) | |
| 11-125, gnl|tetNig1|chr14 (2613197-2613076) | |
| 11-125, gnl|xenTro1|scaffold_1268 (188112-187987) | |
| 235-384, gnl|bosTau2|chr23 (10434892-10435041) | |
| 235-384, gnl|Hg17|chr6 (37555767-37555917) | |
| 235-384, gnl|Mm7|chr17 (27894550-27894698) | |
| 536-1608, gnl|bosTau2|chr23 (10435318-10436391) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cut (0.169924) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| jca (0.11396) | |
| jej (0.0989218) |