Ss1.1-LyN1-MLN01B090099.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCCTACCCACCTGCCAGAAGGGCGACACTTTTGCCGTGGGCGAGGTCAAGATGCTGG AGAAGCAAACCAGCCCGCCCGACTACCTGACGGAGGCCGAGCTCATCACGCTCATGGAGA AGCACGGCATCGGGACAGACGCCAGCATCCCCGTGCACATCAACAACATCTGCCAGCGCA ACTACGTGGTCGTGGAGAGTGGGCGCCGGCTCAAGCCCACCAACCTCGGCATCGTCCTGG TGCATGGCTACTATAAGATTGACGCAGAGCTGGTGCTCCCCACCATCCGCAGCGCAGTGG AGAAGCAGCTGAACCTGATTGCCCAGGGCAAGGCCGACTACCGCCAGGTCCTGGGCCACA CCTTGGACATCTTCAAGAGGAAGTTCCACTACTTCGTGGACTCCATTGCTGGCATGGATG AGCTGATGGAGGTGTCCTTCTCACCCCTGGCAGCCACAGGCAAGCCCCTCTCCCGCTGTG GGAAATGCCACCGGTTCATGAAGTACATCCAGGCCAAGCCAAGCCGTCTGCACTGTTCCC ACTGTGATGAGACCTACACGCTGCCCCAGAATGGCACCATTAAGCTCTACAAGGAGCTCC GGTGCCCGCTTGATGACTTCGAGCTAGTCCTGTGGTCATCGGGCTCACGGGGCAAGAGCT ACCCGCTGTGCCCCTACTGCTCCAACCACCCACCCTTCCGAGACATGAAGAAAGGCACCG GCTGCAATGAGTGCACGCACCCCACCTGCCAGCACTCGCTGAACATGCTGGGCATCGGCC AATGTGTGGAGTGTGAGAGTGGCGTGCTGGTGCTTGACCCCACATCGGGCCCCAAGTGGC GGGTGGCCTGCAACAGATGCAACGTTGTGGCGCACTGCTTTGAGAACGCCCACCGTGTAC GCGTGTCCTCCGACACCTGCAGCACCTGTGAGGCTGCCCTGCTTGATGTCGACTTCAACA AGGCCAAGTCCCCGCTACCAGGAGATGCCACACAGCACATAGGCTGCGTCTTCTGCGACC CCATCTTCCAGGAGCTGGTGGAGCTGAAGCATGCAGCCTCCTGCCACCCTATGCACCGTG GGCCCGGGAGGAGGCAGGGCCGGGGCCGGGGCCGGAGGCCAGCGGGGAAGCCTGGTGCCA GGCGGCCCAAGGACAAGATGTCAGCCCTGGCTGCCTACTTTGTGTGATGGCCCCACCTAG GCTGTGCACGGTGTCCTCTGGGCCATGAAAATCATTAAACGTGTTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCCTACCCACCTGCCAGAAGGGCGACACTTTTGCCGTGGGCGAGGTCAAGATGCTGG AGAAGCAAACCAGCCCGCCCGACTACCTGACGGAGGCCGAGCTCATCACGCTCATGGAGA AGCACGGCATCGGGACAGACGCCAGCATCCCCGTGCACATCAACAACATCTGCCAGCGCA ACTACGTGGTCGTGGAGAGTGGGCGCCGGCTCAAGCCCACCAACCTCGGCATCGTCCTGG TGCATGGCTACTATAAGATTGACGCAGAGCTGGTGCTCCCCACCATCCGCAGCGCAGTGG AGAAGCAGCTGAACCTGATTGCCCAGGGCAAGGCCGACTACCGCCAGGTCCTGGGCCACA CCTTGGACATCTTCAAGAGGAAGTTCCACTACTTCGTGGACTCCATTGCTGGCATGGATG AGCTGATGGAGGTGTCCTTCTCACCCCTGGCAGCCACAGGCAAGCCCCTCTCCCGCTGTG GGAAATGCCACCGGTTCATGAAGTACATCCAGGCCAAGCCAAGCCGTCTGCACTGTTCCC ACTGTGATGAGACCTACACGCTGCCCCAGAATGGCACCATTAAGCTCTACAAGGAGCTCC GGTGCCCGCTTGATGACTTCGAGCTAGTCCTGTGGTCATCGGGCTCACGGGGCAAGAGCT ACCCGCTGTGCCCCTACTGCTCCAACCACCCACCCTTCCGAGACATGAAGAAAGGCACCG GCTGCAATGAGTGCACGCACCCCACCTGCCAGCACTCGCTGAACATGCTGGGCATCGGCC AATGTGTGGAGTGTGAGAGTGGCGTGCTGGTGCTTGACCCCACATCGGGCCCCAAGTGGC GGGTGGCCTGCAACAGATGCAACGTTGTGGCGCACTGCTTTGAGAACGCCCACCGTGTAC GCGTGTCCTCCGACACCTGCAGCACCTGTGAGGCTGCCCTGCTTGATGTCGACTTCAACA AGGCCAAGTCCCCGCTACCAGGAGATGCCACACAGCACATAGGCTGCGTCTTCTGCGACC CCATCTTCCAGGAGCTGGTGGAGCTGAAGCATGCAGCCTCCTGCCACCCTATGCACCGTG GGCCCGGGAGGAGGCAGGGCCGGGGCCGGGGCCGGAGGCCAGCGGGGAAGCCTGGTGCCA GGCGGCCCAAGGACAAGATGTCAGCCCTGGCTGCCTACTTTGTGTGATGGCCCCACCTAG GCTGTGCACGGTGTCCTCTGGGCCATGAAAATCATTAAACGTGTTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 295-412, - strand, RNAz p=0.65931 | |
| 952-1071, - strand, RNAz p=0.916006 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 295-412, - strand, RNAz p=0.65931 | |
| 952-1071, - strand, RNAz p=0.916006 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 132-259, gnl|bosTau2|chr17 (45619297-45619170) | |
| 132-259, gnl|canFam2|chr26 (34265928-34266080) | |
| 132-259, gnl|danRer3|chr5 (3447819-3447683) | |
| 132-259, gnl|dasNov1|scaffold_46613 (9520-9371) | |
| 132-259, gnl|echTel1|scaffold_184379 (6017-5868) | |
| 132-259, gnl|fr1|chrUn (198349893-198349755) | |
| 132-259, gnl|galGal2|chr15 (447904-447755) | |
| 132-259, gnl|hg17|chr22 (20639241-20639390) | |
| 132-259, gnl|Hg17|chr22 (20639376-20639249) | |
| 132-259, gnl|mm7|chr16 (16439294-16439145) | |
| 132-259, gnl|Mm7|chr16 (16439157-16439284) | |
| 132-259, gnl|monDom2|scaffold_214 (639398-639260) | |
| 132-259, gnl|panTro1|chr23 (20665692-20665841) | |
| 132-259, gnl|rheMac2|chr10 (65715290-65715439) | |
| 132-259, gnl|rn3|chr11 (86161082-86161231) | |
| 132-259, gnl|tetNig1|chrUn_random (33590934-33590797) | |
| 132-259, gnl|xenTro1|scaffold_118 (151625-151478) | |
| 261-412, gnl|bosTau2|chr17 (45618715-45618564) | |
| 261-412, gnl|canFam2|chr26 (34265296-34265468) | |
| 261-412, gnl|danRer3|chr5 (3448764-3448602) | |
| 261-412, gnl|dasNov1|scaffold_46613 (10190-10014) | |
| 261-412, gnl|echTel1|scaffold_184379 (6468-6291) | |
| 261-412, gnl|fr1|chrUn (198351197-198351044) | |
| 261-412, gnl|galGal2|chr15 (448299-448136) | |
| 261-412, gnl|hg17|chr22 (20638507-20638688) | |
| 261-412, gnl|Hg17|chr22 (20638663-20638512) | |
| 261-412, gnl|mm7|chr16 (16439944-16439766) | |
| 261-412, gnl|Mm7|chr16 (16439786-16439937) | |
| 261-412, gnl|monDom2|scaffold_214 (641932-641738) | |
| 261-412, gnl|panTro1|chr23 (20664958-20665139) | |
| 261-412, gnl|rheMac2|chr10 (65714556-65714737) | |
| 261-412, gnl|rn3|chr11 (86160274-86160451) | |
| 261-412, gnl|tetNig1|chrUn_random (33592761-33592603) | |
| 261-412, gnl|xenTro1|scaffold_118 (153742-153584) | |
| 713-1241, gnl|bosTau2|chr17 (45617179-45616648) | |
| 713-1241, gnl|Hg17|chr22 (20636523-20635967) | |
| 713-1241, gnl|Mm7|chr16 (16441966-16442512) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-259, gnl|bosTau2|chr17 (45619297-45619170) | |
| 132-259, gnl|canFam2|chr26 (34265928-34266080) | |
| 132-259, gnl|danRer3|chr5 (3447819-3447683) | |
| 132-259, gnl|dasNov1|scaffold_46613 (9520-9371) | |
| 132-259, gnl|echTel1|scaffold_184379 (6017-5868) | |
| 132-259, gnl|fr1|chrUn (198349893-198349755) | |
| 132-259, gnl|galGal2|chr15 (447904-447755) | |
| 132-259, gnl|hg17|chr22 (20639241-20639390) | |
| 132-259, gnl|Hg17|chr22 (20639376-20639249) | |
| 132-259, gnl|mm7|chr16 (16439294-16439145) | |
| 132-259, gnl|Mm7|chr16 (16439157-16439284) | |
| 132-259, gnl|monDom2|scaffold_214 (639398-639260) | |
| 132-259, gnl|panTro1|chr23 (20665692-20665841) | |
| 132-259, gnl|rheMac2|chr10 (65715290-65715439) | |
| 132-259, gnl|rn3|chr11 (86161082-86161231) | |
| 132-259, gnl|tetNig1|chrUn_random (33590934-33590797) | |
| 132-259, gnl|xenTro1|scaffold_118 (151625-151478) | |
| 261-412, gnl|bosTau2|chr17 (45618715-45618564) | |
| 261-412, gnl|canFam2|chr26 (34265296-34265468) | |
| 261-412, gnl|danRer3|chr5 (3448764-3448602) | |
| 261-412, gnl|dasNov1|scaffold_46613 (10190-10014) | |
| 261-412, gnl|echTel1|scaffold_184379 (6468-6291) | |
| 261-412, gnl|fr1|chrUn (198351197-198351044) | |
| 261-412, gnl|galGal2|chr15 (448299-448136) | |
| 261-412, gnl|hg17|chr22 (20638507-20638688) | |
| 261-412, gnl|Hg17|chr22 (20638663-20638512) | |
| 261-412, gnl|mm7|chr16 (16439944-16439766) | |
| 261-412, gnl|Mm7|chr16 (16439786-16439937) | |
| 261-412, gnl|monDom2|scaffold_214 (641932-641738) | |
| 261-412, gnl|panTro1|chr23 (20664958-20665139) | |
| 261-412, gnl|rheMac2|chr10 (65714556-65714737) | |
| 261-412, gnl|rn3|chr11 (86160274-86160451) | |
| 261-412, gnl|tetNig1|chrUn_random (33592761-33592603) | |
| 261-412, gnl|xenTro1|scaffold_118 (153742-153584) | |
| 713-1241, gnl|bosTau2|chr17 (45617179-45616648) | |
| 713-1241, gnl|Hg17|chr22 (20636523-20635967) | |
| 713-1241, gnl|Mm7|chr16 (16441966-16442512) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ece (0.229305) | |
| cut (0.169924) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| cut (0.169924) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |