Non-Coding RNA Search

Ss1.1-LyN1-MLN01B100052.5

Sequence:


               
               AGGCCCGCAGTTTGGCCCGCCATGTTTCTCACCGCAGCGCTCCGGGCACGGGCTACGGGC
TTCACCGCCCAGTGGGGAAGACATGTAAGGAATTTGCATAAGACAGCTGTGCAGAATGGA
GCTGGAGGAGCCTTATTTGTGCACAGAGATACTCCTGAGAATAACCCAGATACTCCATTT
GATTTCACACCAGAAAACTACAAGAGGATAGAGGCAATTGTAAAAAACTACCCAGAAGGG
CATAAAGCAGCAGCTGTGCTTCCAGTCCTGGATTTAGCCCAAAGACAGAATGGATGGCTG
CCCATCTCTGCCATGAACAAGGTGGCAGAAATTTTACAAGTACCTCCAATGAGAGTATAT
GAAGTAGCAACTTTTTATACAATGTATAATCGAAAGCCAGTTGGAAAGTATCATATTCAA
GTCTGCACCACTACGCCTTGCATGCTTCGAAACTCTGATAGCATACTGGAGGCCATTCAG
AAAAAGCTTGGAATAAAGGTTGGAGAGACTACACCTGACAAACTTTTCACTCTTATAGAA
GTGGAATGTTTAGGGGCCTGTGTAAATGCACCAATGGTTCAAATAAATGACAACTACTAT
GAGGATCTGACACCTAAGGATATTGAAGAAATTATTGATGAACTCAAGGCTGGCAAAATC
CCCAAACCTGGGCCAAGGAGTGGACGCTTCTCTTGTGAGCCAGCTGGAGGTCTTACCTCT
TTGACTGAACCACCTAAAGGACCTGGGTTTGGTGTGCAAGCAGGCCTTTAATTTATATTC
AGCTGTAAATATGTCACTGGAGAAATAAAGTATGAACCTCCTGTCTACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCCGCAGTTTGGCCCGCCATGTTTCTCACCGCAGCGCTCCGGGCACGGGCTACGGGC
TTCACCGCCCAGTGGGGAAGACATGTAAGGAATTTGCATAAGACAGCTGTGCAGAATGGA
GCTGGAGGAGCCTTATTTGTGCACAGAGATACTCCTGAGAATAACCCAGATACTCCATTT
GATTTCACACCAGAAAACTACAAGAGGATAGAGGCAATTGTAAAAAACTACCCAGAAGGG
CATAAAGCAGCAGCTGTGCTTCCAGTCCTGGATTTAGCCCAAAGACAGAATGGATGGCTG
CCCATCTCTGCCATGAACAAGGTGGCAGAAATTTTACAAGTACCTCCAATGAGAGTATAT
GAAGTAGCAACTTTTTATACAATGTATAATCGAAAGCCAGTTGGAAAGTATCATATTCAA
GTCTGCACCACTACGCCTTGCATGCTTCGAAACTCTGATAGCATACTGGAGGCCATTCAG
AAAAAGCTTGGAATAAAGGTTGGAGAGACTACACCTGACAAACTTTTCACTCTTATAGAA
GTGGAATGTTTAGGGGCCTGTGTAAATGCACCAATGGTTCAAATAAATGACAACTACTAT
GAGGATCTGACACCTAAGGATATTGAAGAAATTATTGATGAACTCAAGGCTGGCAAAATC
CCCAAACCTGGGCCAAGGAGTGGACGCTTCTCTTGTGAGCCAGCTGGAGGTCTTACCTCT
TTGACTGAACCACCTAAAGGACCTGGGTTTGGTGTGCAAGCAGGCCTTTAATTTATATTC
AGCTGTAAATATGTCACTGGAGAAATAAAGTATGAACCTCCTGTCTACAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|3123721|dbj|BAA25988.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3123721|dbj|BAA25988.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               662-821, + strand, RNAz p=0.975412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               662-821, + strand, RNAz p=0.975412

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-535, gnl|bosTau2|chr11 (85182947-85182431)
               

               
               1-535, gnl|Hg17|chr19 (58419739-58419268)
               


               
               662-840, gnl|bosTau2|chr11 (39797312-39797135)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-535, gnl|bosTau2|chr11 (85182947-85182431)
               

               
               1-535, gnl|Hg17|chr19 (58419739-58419268)
               


               
               662-840, gnl|bosTau2|chr11 (39797312-39797135)

Expressed library(ies): 37 entry(ies)

More info

Expressed library(ies): 37 entry(ies)

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               hea (2.24949)
               

               
               ssp (1.21968)
               

               
               sme (0.91631)
               

               
               ldo (0.679018)
               

               
               col (0.585023)
               

               
               ste (0.540833)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               spl (0.429553)
               

               
               nms (0.427716)
               

               
               tes (0.415628)
               

               
               eje (0.395335)
               

               
               ton (0.351)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (2.24949)
               

               
               ssp (1.21968)
               

               
               sme (0.91631)
               

               
               ldo (0.679018)
               

               
               col (0.585023)
               

               
               ste (0.540833)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               spl (0.429553)
               

               
               nms (0.427716)
               

               
               tes (0.415628)
               

               
               eje (0.395335)
               

               
               ton (0.351)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	1-535, gnl\|bosTau2\|chr11 (85182947-85182431)
	1-535, gnl\|Hg17\|chr19 (58419739-58419268)

	662-840, gnl\|bosTau2\|chr11 (39797312-39797135)

	hea (2.24949)
	ssp (1.21968)
	sme (0.91631)
	ldo (0.679018)
	col (0.585023)
	ste (0.540833)
	tbr (0.462535)
	ece (0.45861)
	spl (0.429553)
	nms (0.427716)
	tes (0.415628)
	eje (0.395335)
	ton (0.351)
	cki (0.330469)
	nco (0.323468)
	lnt (0.284616)
	hlv (0.278513)
	che (0.272628)
	cov (0.264306)
	pgl (0.236967)
	mas (0.210305)
	nlu (0.191681)
	nep (0.183925)
	eye (0.170503)
	fhi (0.169578)
	csp (0.161186)
	fco (0.157208)
	eli (0.151814)
	bfe (0.149858)
	csk (0.140746)
	cst (0.140036)
	nmm (0.132802)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	ebs (0.118301)
	nbm (0.0993246)