Non-Coding RNA Search

Ss1.1-LyN1-MLN01B100062.5

Sequence:


               
               GATGACACAGTGGCGCCCAGCTCGACGTTCTGCAAGGTCTACACGCTGACTCCCTTCCTG
GCCAACAACCGAGAGAAGCGGGGCCTCGCCCTGGACGGGAAGCTCAAGCATGAGGACACG
AACCTGGCCTCCAGCACCCTGTTGAGGGAAGGAGCCAACCGGGAGGTCCTCGGCATCATT
GTTTCCTACAAAGTGAAGGTGAAGCTGGTGGTGTCTCGGGGCGGTGACGTGGCCGTGGAA
CTGCCTTTCACCCTAATGCACCCCAAGCCCAAAGAGGAACCCCCGCATCGGGAAGTTCCA
GAGAACGAGGCGCCAGTAGATACCAATCTCATAGAACTTGACACCAATGATGACGACATT
GTGTTTGAGGACTTTGCCCGCCAGAGACTGAAGGGCATGAAGGAAGACAAGGAGGAGGAG
GAGGAGGGCACCGGCTCTCCGAGGCTCAACGACAGATAGACTGGGGCCGGCCGGCCCTCC
CTCCGGGCGGCTCCAGGTCCACTGTCACGCACTAGGATGCTTGCTCGTCTTCTTCCTGTC
CTGGTCCCCCCTCCCTTTTGTTCTTCCAGTTACTACCAGGGGCCCCCAGTGGTCTTCCAG
GTCCCAGTGGTGAACCTCTGGCCTCAGGACTAGCCCATGTCACCTTGCCAACAGGGCCAC
ATGCACCACCCTCACCCCTCTCGCTGCGGTCACCTCTCCACCCCTCCCCCTTTTTCCTGT
TGATCCCCAGAAAGGCCAACAGGGCTCTGGCCTTGGAATTTGACTCGGGCTGGGGAGCAA
AAAGGGGAGGGAGGGGCCCGAGGGCTCGGAGGGGTGGGACGGGGGCTGAAGACTCGTGGG
AGGCCGTCCACTGTTCCCGGTGATTCACGCAGTTCTGGCAGCTAAAACATGACCGCGGTG
AAGGCACCTCCTCTGGCTTCGAGGGCCAGACCTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGACACAGTGGCGCCCAGCTCGACGTTCTGCAAGGTCTACACGCTGACTCCCTTCCTG
GCCAACAACCGAGAGAAGCGGGGCCTCGCCCTGGACGGGAAGCTCAAGCATGAGGACACG
AACCTGGCCTCCAGCACCCTGTTGAGGGAAGGAGCCAACCGGGAGGTCCTCGGCATCATT
GTTTCCTACAAAGTGAAGGTGAAGCTGGTGGTGTCTCGGGGCGGTGACGTGGCCGTGGAA
CTGCCTTTCACCCTAATGCACCCCAAGCCCAAAGAGGAACCCCCGCATCGGGAAGTTCCA
GAGAACGAGGCGCCAGTAGATACCAATCTCATAGAACTTGACACCAATGATGACGACATT
GTGTTTGAGGACTTTGCCCGCCAGAGACTGAAGGGCATGAAGGAAGACAAGGAGGAGGAG
GAGGAGGGCACCGGCTCTCCGAGGCTCAACGACAGATAGACTGGGGCCGGCCGGCCCTCC
CTCCGGGCGGCTCCAGGTCCACTGTCACGCACTAGGATGCTTGCTCGTCTTCTTCCTGTC
CTGGTCCCCCCTCCCTTTTGTTCTTCCAGTTACTACCAGGGGCCCCCAGTGGTCTTCCAG
GTCCCAGTGGTGAACCTCTGGCCTCAGGACTAGCCCATGTCACCTTGCCAACAGGGCCAC
ATGCACCACCCTCACCCCTCTCGCTGCGGTCACCTCTCCACCCCTCCCCCTTTTTCCTGT
TGATCCCCAGAAAGGCCAACAGGGCTCTGGCCTTGGAATTTGACTCGGGCTGGGGAGCAA
AAAGGGGAGGGAGGGGCCCGAGGGCTCGGAGGGGTGGGACGGGGGCTGAAGACTCGTGGG
AGGCCGTCCACTGTTCCCGGTGATTCACGCAGTTCTGGCAGCTAAAACATGACCGCGGTG
AAGGCACCTCCTCTGGCTTCGAGGGCCAGACCTCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51476170|emb|CAH18075.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51476170|emb|CAH18075.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               660-796, + strand, RNAz p=0.999946

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               660-796, + strand, RNAz p=0.999946

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020251, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020251, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-147, gnl|bosTau2|chr15 (34936031-34935888)
               

               
               3-147, gnl|Hg17|chr11 (74662903-74662760)
               

               
               3-147, gnl|Mm7|chr7 (95625414-95625556)
               


               
               196-295, gnl|bosTau2|chr15 (34931208-34931109)
               

               
               196-295, gnl|Hg17|chr11 (74657682-74657581)
               

               
               196-295, gnl|Mm7|chr7 (95629261-95629354)
               


               
               342-932, gnl|bosTau2|chr15 (34928945-34928358)
               

               
               342-932, gnl|Hg17|chr11 (74654972-74654369)
               

               
               342-932, gnl|Mm7|chr7 (95631885-95632442)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-147, gnl|bosTau2|chr15 (34936031-34935888)
               

               
               3-147, gnl|Hg17|chr11 (74662903-74662760)
               

               
               3-147, gnl|Mm7|chr7 (95625414-95625556)
               


               
               196-295, gnl|bosTau2|chr15 (34931208-34931109)
               

               
               196-295, gnl|Hg17|chr11 (74657682-74657581)
               

               
               196-295, gnl|Mm7|chr7 (95629261-95629354)
               


               
               342-932, gnl|bosTau2|chr15 (34928945-34928358)
               

               
               342-932, gnl|Hg17|chr11 (74654972-74654369)
               

               
               342-932, gnl|Mm7|chr7 (95631885-95632442)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	3-147, gnl\|bosTau2\|chr15 (34936031-34935888)
	3-147, gnl\|Hg17\|chr11 (74662903-74662760)
	3-147, gnl\|Mm7\|chr7 (95625414-95625556)

	196-295, gnl\|bosTau2\|chr15 (34931208-34931109)
	196-295, gnl\|Hg17\|chr11 (74657682-74657581)
	196-295, gnl\|Mm7\|chr7 (95629261-95629354)

	342-932, gnl\|bosTau2\|chr15 (34928945-34928358)
	342-932, gnl\|Hg17\|chr11 (74654972-74654369)
	342-932, gnl\|Mm7\|chr7 (95631885-95632442)