Non-Coding RNA Search

Ss1.1-LyN1-MLN01B100077.5

Sequence:


               
               CATCAAATAGTTCGGATTTCTCACCTACCATCCCTGCCACACCGCTCCAGAGAGACGTCT
GTGTCTCTTTTGAGTGGCACGCCCACGTTTCTGACACTGTCCGTCATCCTGCCCCTGTCT
TGACACTTGTCCGTGGTCTGCCCACCTTTTCTTTAACATGGTCGATTCATATAAGGTTGT
GTTATGTTGTCATTTATCTTCAGTTTTCTTATTTTCTAGGAACTTCCTGTAGAAAAGCCC
CCCAAAACAAAGCACACCTTAATTGACTAAATAAAGATAATGCATGCTCAACTTAGGATA
AGCACTACGGCAAAGGATATGAAATCTACCAAGCTTGCAAGACCAGGTGAAGCTGACCCC
AAAATGCTATCACACAACTGATTGCCAGCACAGGCCCCTTGTTACCCTGGTCAGAGTCGG
CGCCCGGCATGGGTGCCAGGCTCCCAGGTGATGAGATACACAGAGGAGGGCGCTGTAAGA
CGGTGGTCCCAGGACCGGGAACTCAGACATGAGCGTGGCCCTGGTGTTTGACACGTGGCA
GAGAAAGCAGAGATTTGAACCTGACCTTGCAAAGCAAGTTCTCTGTTTTATCAGTAAGTG
GGTGTAGCTTTTCAGGGATGACACATTCTGATGCACTCATTTTAAAATGTTTTGGTCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCAAATAGTTCGGATTTCTCACCTACCATCCCTGCCACACCGCTCCAGAGAGACGTCT
GTGTCTCTTTTGAGTGGCACGCCCACGTTTCTGACACTGTCCGTCATCCTGCCCCTGTCT
TGACACTTGTCCGTGGTCTGCCCACCTTTTCTTTAACATGGTCGATTCATATAAGGTTGT
GTTATGTTGTCATTTATCTTCAGTTTTCTTATTTTCTAGGAACTTCCTGTAGAAAAGCCC
CCCAAAACAAAGCACACCTTAATTGACTAAATAAAGATAATGCATGCTCAACTTAGGATA
AGCACTACGGCAAAGGATATGAAATCTACCAAGCTTGCAAGACCAGGTGAAGCTGACCCC
AAAATGCTATCACACAACTGATTGCCAGCACAGGCCCCTTGTTACCCTGGTCAGAGTCGG
CGCCCGGCATGGGTGCCAGGCTCCCAGGTGATGAGATACACAGAGGAGGGCGCTGTAAGA
CGGTGGTCCCAGGACCGGGAACTCAGACATGAGCGTGGCCCTGGTGTTTGACACGTGGCA
GAGAAAGCAGAGATTTGAACCTGACCTTGCAAAGCAAGTTCTCTGTTTTATCAGTAAGTG
GGTGTAGCTTTTCAGGGATGACACATTCTGATGCACTCATTTTAAAATGTTTTGGTCACA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               5-418, gnl|bosTau2|chr16 (40170637-40170215)
               

               
               5-418, gnl|Hg17|chr1 (13858081-13858493)
               


               
               484-660, gnl|bosTau2|chr16 (40170111-40169934)
               

               
               484-660, gnl|canFam2|chr2 (86308065-86307619)
               

               
               484-660, gnl|dasNov1|scaffold_2782 (79414-79920)
               

               
               484-660, gnl|galGal2|chr21 (4837315-4836739)
               

               
               484-660, gnl|hg17|chr1 (13858366-13858887)
               

               
               484-660, gnl|Hg17|chr1 (13858598-13858770)
               

               
               484-660, gnl|loxAfr1|scaffold_15105 (9040-8530)
               

               
               484-660, gnl|mm7|chr4 (142541355-142540849)
               

               
               484-660, gnl|Mm7|chr4 (142541111-142540940)
               

               
               484-660, gnl|monDom2|scaffold_114 (2075072-2074541)
               

               
               484-660, gnl|oryCun1|scaffold_196747 (29223-28695)
               

               
               484-660, gnl|panTro1|chr1 (13913803-13914319)
               

               
               484-660, gnl|rheMac2|chr1 (16424868-16425389)
               

               
               484-660, gnl|rn3|chr5 (161994798-161994284)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-418, gnl|bosTau2|chr16 (40170637-40170215)
               

               
               5-418, gnl|Hg17|chr1 (13858081-13858493)
               


               
               484-660, gnl|bosTau2|chr16 (40170111-40169934)
               

               
               484-660, gnl|canFam2|chr2 (86308065-86307619)
               

               
               484-660, gnl|dasNov1|scaffold_2782 (79414-79920)
               

               
               484-660, gnl|galGal2|chr21 (4837315-4836739)
               

               
               484-660, gnl|hg17|chr1 (13858366-13858887)
               

               
               484-660, gnl|Hg17|chr1 (13858598-13858770)
               

               
               484-660, gnl|loxAfr1|scaffold_15105 (9040-8530)
               

               
               484-660, gnl|mm7|chr4 (142541355-142540849)
               

               
               484-660, gnl|Mm7|chr4 (142541111-142540940)
               

               
               484-660, gnl|monDom2|scaffold_114 (2075072-2074541)
               

               
               484-660, gnl|oryCun1|scaffold_196747 (29223-28695)
               

               
               484-660, gnl|panTro1|chr1 (13913803-13914319)
               

               
               484-660, gnl|rheMac2|chr1 (16424868-16425389)
               

               
               484-660, gnl|rn3|chr5 (161994798-161994284)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ill (0.175593)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	5-418, gnl\|bosTau2\|chr16 (40170637-40170215)
	5-418, gnl\|Hg17\|chr1 (13858081-13858493)

	484-660, gnl\|bosTau2\|chr16 (40170111-40169934)
	484-660, gnl\|canFam2\|chr2 (86308065-86307619)
	484-660, gnl\|dasNov1\|scaffold_2782 (79414-79920)
	484-660, gnl\|galGal2\|chr21 (4837315-4836739)
	484-660, gnl\|hg17\|chr1 (13858366-13858887)
	484-660, gnl\|Hg17\|chr1 (13858598-13858770)
	484-660, gnl\|loxAfr1\|scaffold_15105 (9040-8530)
	484-660, gnl\|mm7\|chr4 (142541355-142540849)
	484-660, gnl\|Mm7\|chr4 (142541111-142540940)
	484-660, gnl\|monDom2\|scaffold_114 (2075072-2074541)
	484-660, gnl\|oryCun1\|scaffold_196747 (29223-28695)
	484-660, gnl\|panTro1\|chr1 (13913803-13914319)
	484-660, gnl\|rheMac2\|chr1 (16424868-16425389)
	484-660, gnl\|rn3\|chr5 (161994798-161994284)