Ss1.1-LyN1-MLN01B100102.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCCCCCCGCCCTCCCCGGCTCCATCTTGCCAGCGACCGAGCCGGAGTGTGTGTGACGC TGCTCCCCGGGTTCAGAATGTCATACCCAGGCTATACCCCCACAGGCTACCCACCTTTCC CTGGATATCCTCCTGCAGGTCAGGAGTCATCTTTTCCCCCTCCTGGTCAGTATCCTTATC CTAGTGGTTTTCCTCCAATGGGAGGAGGTGCCTACCCACCAGCACCAAGTAGTGGCTACC CAGGAGCTGGAGGCTACCCTGCCCCTGGAGGTTATCCAGCCCCTGGAGGCTATCCTGGTG CCCCACAGCCAGGGGGAGCTCCTTCCTATCCTGGAGGTCAAGGATTTGGAGCTCCACCAG GTGGAGCAGGCTTTTCTGGCTATCCACAGCCACCCTCACAGTCTTATGGTGGTGGCCCAG CACAGGTCCCAGTACCTGGTGGTTTTCCTGGAGGACCAATGCCTTCTCAGTATCCTGGAG GACAAACTCCTTACCCTAGTCAGCTTGCCACAGTGGCTCAAGGGACAATCCGACCGGCTG CCAACTTTGATGCCATGAGAGATGCAGAAATTCTTCGTAAAGCAATGAAGGGTTTTGGGA CAGACGAGCAGGCAATTATAGATGTTGTGGCCAACCGTTCCAATGATCAAAGGCAAAAAA TTAAAGCAGCTTTTAAGACCATGTATGGCAAGGATTTAATCAAAGATCTTAAATCAGAGT TAAGTGGAAATATGGAAGAACTGATCCTTGCCCTGTTCATGCCATCTACATATTATGATG CCTGGAGTTTACGGAATGCAATGAAGGGAGCAGGAACTCAGGAACGTGTATTAATTGAAA TTTTGTGCACAAGAACAAATCAGGAAATCCGAGAAATTGTCCGATGTTATCAATCAGAAT TTGGACGAGATCTTGAAAAGGACATTAGGTCAGATACATCAGGGCATTTTGAACGTTTAC TTGTATCCATGTGCCAGGGAAATCGCGACGAGAACCAGAATGTTAACCCCCAGATGGCTC AGGAAGACGCTCAGCGTCTTTATCAAGCTGGCGAAGGGAGGTTAGGGACAGATGAATCTT GCTTTAACATGATTCTCGCCACAAGAAGCTTTCCTCAGCTGAAAGCTACCATGGAGGCTT ATTCCAGGATGGCTAATCGAGATTTGTTAAGCAGTGTTGGCCGTGAGTTTTCTGGAAATG TCGAAAGTGGCTTGAAGACCATCTTGCAGTGTGCCCTGAACCGCCCTGCCTTCTTCGCTG AGAGGCTCTACTATTCCATGAAAGGTGCCGGCACAGATGACTCCACCCTGGTCAGGATTG TGGTTACGCGGAGTGAGATTGATCTTGTACAAATAAAACAGATGTTCAGTCAGATGTATC AGAAGACCCTGGGCACAATGATTGCAAGTGACACAAGTGGAGATTACCGAAGGCTTCTTC TGGCCATTGTGGGCCAGTAGGAGAGATTTTTTTTTTTTTAAATGAATGAAGCTATTCAAA GCTTATACTTCAAAACAATGACTGATCTGCATGCAGCAACATCAACCGTCACCTAACCAA AAGAGCTTTTACTAAGGACTACGTCAGGGTATTGTGCTTGGTTTGCACATGTGATTATTG CCTTAATTCCAATGTTATTTTTTCCTCTATATACAATCAAATAAAGCCATATCACAATGA TGTAGTAATAATGCAATGTTTGTAAAGCATAATTTTCACTGCTTTTATTCTAAGTAGGAA ATCAAAAGTCACAACAGTCTCTCCCTCTGTGTAATAATATTGACTAAAAAGATTCAATAT TGAATAAATTTGAATAAATAATACTGAATTAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCCCCCCGCCCTCCCCGGCTCCATCTTGCCAGCGACCGAGCCGGAGTGTGTGTGACGC TGCTCCCCGGGTTCAGAATGTCATACCCAGGCTATACCCCCACAGGCTACCCACCTTTCC CTGGATATCCTCCTGCAGGTCAGGAGTCATCTTTTCCCCCTCCTGGTCAGTATCCTTATC CTAGTGGTTTTCCTCCAATGGGAGGAGGTGCCTACCCACCAGCACCAAGTAGTGGCTACC CAGGAGCTGGAGGCTACCCTGCCCCTGGAGGTTATCCAGCCCCTGGAGGCTATCCTGGTG CCCCACAGCCAGGGGGAGCTCCTTCCTATCCTGGAGGTCAAGGATTTGGAGCTCCACCAG GTGGAGCAGGCTTTTCTGGCTATCCACAGCCACCCTCACAGTCTTATGGTGGTGGCCCAG CACAGGTCCCAGTACCTGGTGGTTTTCCTGGAGGACCAATGCCTTCTCAGTATCCTGGAG GACAAACTCCTTACCCTAGTCAGCTTGCCACAGTGGCTCAAGGGACAATCCGACCGGCTG CCAACTTTGATGCCATGAGAGATGCAGAAATTCTTCGTAAAGCAATGAAGGGTTTTGGGA CAGACGAGCAGGCAATTATAGATGTTGTGGCCAACCGTTCCAATGATCAAAGGCAAAAAA TTAAAGCAGCTTTTAAGACCATGTATGGCAAGGATTTAATCAAAGATCTTAAATCAGAGT TAAGTGGAAATATGGAAGAACTGATCCTTGCCCTGTTCATGCCATCTACATATTATGATG CCTGGAGTTTACGGAATGCAATGAAGGGAGCAGGAACTCAGGAACGTGTATTAATTGAAA TTTTGTGCACAAGAACAAATCAGGAAATCCGAGAAATTGTCCGATGTTATCAATCAGAAT TTGGACGAGATCTTGAAAAGGACATTAGGTCAGATACATCAGGGCATTTTGAACGTTTAC TTGTATCCATGTGCCAGGGAAATCGCGACGAGAACCAGAATGTTAACCCCCAGATGGCTC AGGAAGACGCTCAGCGTCTTTATCAAGCTGGCGAAGGGAGGTTAGGGACAGATGAATCTT GCTTTAACATGATTCTCGCCACAAGAAGCTTTCCTCAGCTGAAAGCTACCATGGAGGCTT ATTCCAGGATGGCTAATCGAGATTTGTTAAGCAGTGTTGGCCGTGAGTTTTCTGGAAATG TCGAAAGTGGCTTGAAGACCATCTTGCAGTGTGCCCTGAACCGCCCTGCCTTCTTCGCTG AGAGGCTCTACTATTCCATGAAAGGTGCCGGCACAGATGACTCCACCCTGGTCAGGATTG TGGTTACGCGGAGTGAGATTGATCTTGTACAAATAAAACAGATGTTCAGTCAGATGTATC AGAAGACCCTGGGCACAATGATTGCAAGTGACACAAGTGGAGATTACCGAAGGCTTCTTC TGGCCATTGTGGGCCAGTAGGAGAGATTTTTTTTTTTTTAAATGAATGAAGCTATTCAAA GCTTATACTTCAAAACAATGACTGATCTGCATGCAGCAACATCAACCGTCACCTAACCAA AAGAGCTTTTACTAAGGACTACGTCAGGGTATTGTGCTTGGTTTGCACATGTGATTATTG CCTTAATTCCAATGTTATTTTTTCCTCTATATACAATCAAATAAAGCCATATCACAATGA TGTAGTAATAATGCAATGTTTGTAAAGCATAATTTTCACTGCTTTTATTCTAAGTAGGAA ATCAAAAGTCACAACAGTCTCTCCCTCTGTGTAATAATATTGACTAAAAAGATTCAATAT TGAATAAATTTGAATAAATAATACTGAATTAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 115-338, - strand, RNAz p=0.989665 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 115-338, - strand, RNAz p=0.989665 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 115-338, gnl|bosTau2|chr28 (22627635-22627412) | |
| 115-338, gnl|Hg17|chr10 (74828166-74827943) | |
| 115-338, gnl|Mm7|chr14 (18128147-18127923) | |
| 444-1747, gnl|bosTau2|chr2 (38081501-38080202) | |
| 490-598, gnl|bosTau2|chr28 (22621832-22621724) | |
| 490-598, gnl|canFam2|chr4 (27155958-27156038) | |
| 490-598, gnl|dasNov1|scaffold_256809 (736-816) | |
| 490-598, gnl|echTel1|scaffold_285701 (24253-24174) | |
| 490-598, gnl|galGal2|chr6 (15444290-15444370) | |
| 490-598, gnl|hg17|chr10 (74818070-74818150) | |
| 490-598, gnl|Hg17|chr10 (74818183-74818075) | |
| 490-598, gnl|loxAfr1|scaffold_39954 (1379-1458) | |
| 490-598, gnl|mm7|chr14 (18121395-18121475) | |
| 490-598, gnl|Mm7|chr14 (18121508-18121400) | |
| 490-598, gnl|monDom2|scaffold_14 (1427127-1427210) | |
| 490-598, gnl|oryCun1|scaffold_214589 (43-123) | |
| 490-598, gnl|panTro1|chr8_random (40284202-40284282) | |
| 490-598, gnl|rheMac2|chr9 (63544755-63544675) | |
| 490-598, gnl|rn3|chr15 (4064864-4064784) | |
| 490-598, gnl|tetNig1|chr1 (2483060-2482980) | |
| 490-598, gnl|xenTro1|scaffold_1324 (177807-177887) | |
| 797-1342, gnl|bosTau2|chr14 (22850888-22851433) | |
| 797-1342, gnl|Hg17|chr9 (73004837-73013560) | |
| 797-1342, gnl|Mm7|chr19 (20083362-20075780) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-338, gnl|bosTau2|chr28 (22627635-22627412) | |
| 115-338, gnl|Hg17|chr10 (74828166-74827943) | |
| 115-338, gnl|Mm7|chr14 (18128147-18127923) | |
| 444-1747, gnl|bosTau2|chr2 (38081501-38080202) | |
| 490-598, gnl|bosTau2|chr28 (22621832-22621724) | |
| 490-598, gnl|canFam2|chr4 (27155958-27156038) | |
| 490-598, gnl|dasNov1|scaffold_256809 (736-816) | |
| 490-598, gnl|echTel1|scaffold_285701 (24253-24174) | |
| 490-598, gnl|galGal2|chr6 (15444290-15444370) | |
| 490-598, gnl|hg17|chr10 (74818070-74818150) | |
| 490-598, gnl|Hg17|chr10 (74818183-74818075) | |
| 490-598, gnl|loxAfr1|scaffold_39954 (1379-1458) | |
| 490-598, gnl|mm7|chr14 (18121395-18121475) | |
| 490-598, gnl|Mm7|chr14 (18121508-18121400) | |
| 490-598, gnl|monDom2|scaffold_14 (1427127-1427210) | |
| 490-598, gnl|oryCun1|scaffold_214589 (43-123) | |
| 490-598, gnl|panTro1|chr8_random (40284202-40284282) | |
| 490-598, gnl|rheMac2|chr9 (63544755-63544675) | |
| 490-598, gnl|rn3|chr15 (4064864-4064784) | |
| 490-598, gnl|tetNig1|chr1 (2483060-2482980) | |
| 490-598, gnl|xenTro1|scaffold_1324 (177807-177887) | |
| 797-1342, gnl|bosTau2|chr14 (22850888-22851433) | |
| 797-1342, gnl|Hg17|chr9 (73004837-73013560) | |
| 797-1342, gnl|Mm7|chr19 (20083362-20075780) |
| Expressed library(ies): 63 entry(ies) | More info |
| Expressed library(ies): 63 entry(ies) | Help | Less info |
| isp (1.05263) | |
| bfe (0.899146) | |
| ssp (0.813118) | |
| vin (0.665115) | |
| cov (0.660764) | |
| kid (0.648677) | |
| cty (0.62448) | |
| tbr (0.616713) | |
| tra (0.61546) | |
| lin (0.582411) | |
| spl (0.572738) | |
| ton (0.526501) | |
| eye (0.511509) | |
| nco (0.485201) | |
| mga (0.480615) | |
| pgl (0.473934) | |
| ski (0.440205) | |
| ova (0.387397) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| thg (0.380373) | |
| rec (0.346141) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| fco (0.314416) | |
| fat (0.294855) | |
| liv (0.292569) | |
| ldo (0.291008) | |
| che (0.272628) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| spc (0.226732) | |
| mas (0.210305) | |
| tes (0.207814) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 63 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (1.05263) | |
| bfe (0.899146) | |
| ssp (0.813118) | |
| vin (0.665115) | |
| cov (0.660764) | |
| kid (0.648677) | |
| cty (0.62448) | |
| tbr (0.616713) | |
| tra (0.61546) | |
| lin (0.582411) | |
| spl (0.572738) | |
| ton (0.526501) | |
| eye (0.511509) | |
| nco (0.485201) | |
| mga (0.480615) | |
| pgl (0.473934) | |
| ski (0.440205) | |
| ova (0.387397) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| thg (0.380373) | |
| rec (0.346141) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| fco (0.314416) | |
| fat (0.294855) | |
| liv (0.292569) | |
| ldo (0.291008) | |
| che (0.272628) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| spc (0.226732) | |
| mas (0.210305) | |
| tes (0.207814) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |