Ss1.1-LyN1-MLN01B110014.5
|
TCTGCCTGTGGGGTGACGAGTCAGGGAGACACTGCTTCCGGGTGGGCCTCCAGGTGGGCC
TCCAGGAGGGCCGAGGCAGAGGAGCCTCTGCCTGTGTCAGGTGGCAGTGGTGTCCTACCA
CTTGGCACAGACCTCCACGGGCCCTTCATCGCTTGGCTCCACTGTGCTGTGGGGTAAGCG
GCGCGGGGAGGGACGACGATCTGGGCTTGGAAGGGAAACAGGAAATCTGGCCAAGAAGCT
TACGGCAGCTTTCTGGCAGAAGTGGATCAACATGGCCTGGCGGCTGACGCTCTTCGTGCT
CCTGGGTTTGGTGGCTGCTGTGGGGGGCGCCCGGGCCAAGTCGGACATGCTCAATGTCTG
CATGGATGCCAAGCACCACAAGCCAAAGCCAAGCCCGGAGGACAAGCTGCACGACCAGTG
CAGCCCCTGGAGGAAGAACTCCTGCTGCTCAGTCAACACCAGCCTAGAAGCCCATAAAGA
CATCTCCTACCTGTACAGATTCAACTGGGACCACTGCGGCAAGATGGAGCCGGCCTGCAA
GCGCCACTTCATTCAAGACACCTGTCTCTATGAGTGCTCGCCCAACCTGGGGCCCTGGAT
CCAGGAGGTGAACCAGAAGTGGCGCAGAGAGCGGATCCTGAACGTGCCCCTCTGCAAAGA
GGACTGTCAGATCTGGTGGGAAGACTGCCGCACCTCCTACACCTGCAAGAGCAACTGGCA
CAAGGGCTGGAACTGGACCTCAGGGTATAACCAGTGCCCAGTGAGCGCCGCCTGCCACCG
CTTCGACTTCTACTTCCCCACGCCCGCTGCCCTGTGCAACGAGATCTGGAGCCACTCCTT
TGAAGTCAGCAGCTACAGCCGGGGCAGCGGCCGCTGCATCCAGATGTGGTTCGACCCGGC
CCAGGGCAACCCCAACGAGGCGGTGGCGAGATACTATGCAGAGAATGGGGATGCTGGGGC
CGTGGCCCAGGGGATCGGGCCTCTCCTGACCAACTTGACGGAGATGGTGAAACACTGGGT
CACCGGCTAAGCTGTTCCCCCGCCGACCCCTGCTTTCCGCCCACACCCCCTGGGTTACTC
TCCGGGTGGCCTCAGCACCCCGGTCATTGGCTCCTGATCTAAGATCCGATGGGGAGCCTC
TGATGGCCTCTTCCAATACAATATCCACGTGTGCAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTGCCTGTGGGGTGACGAGTCAGGGAGACACTGCTTCCGGGTGGGCCTCCAGGTGGGCC
TCCAGGAGGGCCGAGGCAGAGGAGCCTCTGCCTGTGTCAGGTGGCAGTGGTGTCCTACCA
CTTGGCACAGACCTCCACGGGCCCTTCATCGCTTGGCTCCACTGTGCTGTGGGGTAAGCG
GCGCGGGGAGGGACGACGATCTGGGCTTGGAAGGGAAACAGGAAATCTGGCCAAGAAGCT
TACGGCAGCTTTCTGGCAGAAGTGGATCAACATGGCCTGGCGGCTGACGCTCTTCGTGCT
CCTGGGTTTGGTGGCTGCTGTGGGGGGCGCCCGGGCCAAGTCGGACATGCTCAATGTCTG
CATGGATGCCAAGCACCACAAGCCAAAGCCAAGCCCGGAGGACAAGCTGCACGACCAGTG
CAGCCCCTGGAGGAAGAACTCCTGCTGCTCAGTCAACACCAGCCTAGAAGCCCATAAAGA
CATCTCCTACCTGTACAGATTCAACTGGGACCACTGCGGCAAGATGGAGCCGGCCTGCAA
GCGCCACTTCATTCAAGACACCTGTCTCTATGAGTGCTCGCCCAACCTGGGGCCCTGGAT
CCAGGAGGTGAACCAGAAGTGGCGCAGAGAGCGGATCCTGAACGTGCCCCTCTGCAAAGA
GGACTGTCAGATCTGGTGGGAAGACTGCCGCACCTCCTACACCTGCAAGAGCAACTGGCA
CAAGGGCTGGAACTGGACCTCAGGGTATAACCAGTGCCCAGTGAGCGCCGCCTGCCACCG
CTTCGACTTCTACTTCCCCACGCCCGCTGCCCTGTGCAACGAGATCTGGAGCCACTCCTT
TGAAGTCAGCAGCTACAGCCGGGGCAGCGGCCGCTGCATCCAGATGTGGTTCGACCCGGC
CCAGGGCAACCCCAACGAGGCGGTGGCGAGATACTATGCAGAGAATGGGGATGCTGGGGC
CGTGGCCCAGGGGATCGGGCCTCTCCTGACCAACTTGACGGAGATGGTGAAACACTGGGT
CACCGGCTAAGCTGTTCCCCCGCCGACCCCTGCTTTCCGCCCACACCCCCTGGGTTACTC
TCCGGGTGGCCTCAGCACCCCGGTCATTGGCTCCTGATCTAAGATCCGATGGGGAGCCTC
TGATGGCCTCTTCCAATACAATATCCACGTGTGCAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
271-608, gnl|bosTau2|chr13 (21284168-21284507) |
|
271-608, gnl|Hg17|chr11 (71580865-71584152) |
|
271-608, gnl|Mm7|chr7 (97890061-97887057) |
| |
|
738-1052, gnl|bosTau2|chr15 (29894047-29893732) |
|
738-1052, gnl|canFam2|chr21 (28958506-28958306) |
|
738-1052, gnl|dasNov1|scaffold_28726 (44772-44951) |
|
738-1052, gnl|echTel1|scaffold_325018 (39746-39544) |
|
738-1052, gnl|hg17|chr11 (71528273-71528477) |
|
738-1052, gnl|loxAfr1|scaffold_12984 (73328-73533) |
|
738-1052, gnl|mm7|chr16 (15643189-15643391) |
|
738-1052, gnl|monDom2|scaffold_74 (6320418-6320213) |
|
738-1052, gnl|oryCun1|scaffold_211552 (48503-48299) |
|
738-1052, gnl|panTro1|chr9 (72797110-72797314) |
|
738-1052, gnl|rheMac2|chr14 (70191512-70191716) |
|
738-1052, gnl|rn3|chr1 (159375264-159375055) |
|
738-1052, gnl|xenTro1|scaffold_2049 (37090-37290) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
271-608, gnl|bosTau2|chr13 (21284168-21284507) |
|
271-608, gnl|Hg17|chr11 (71580865-71584152) |
|
271-608, gnl|Mm7|chr7 (97890061-97887057) |
| |
|
738-1052, gnl|bosTau2|chr15 (29894047-29893732) |
|
738-1052, gnl|canFam2|chr21 (28958506-28958306) |
|
738-1052, gnl|dasNov1|scaffold_28726 (44772-44951) |
|
738-1052, gnl|echTel1|scaffold_325018 (39746-39544) |
|
738-1052, gnl|hg17|chr11 (71528273-71528477) |
|
738-1052, gnl|loxAfr1|scaffold_12984 (73328-73533) |
|
738-1052, gnl|mm7|chr16 (15643189-15643391) |
|
738-1052, gnl|monDom2|scaffold_74 (6320418-6320213) |
|
738-1052, gnl|oryCun1|scaffold_211552 (48503-48299) |
|
738-1052, gnl|panTro1|chr9 (72797110-72797314) |
|
738-1052, gnl|rheMac2|chr14 (70191512-70191716) |
|
738-1052, gnl|rn3|chr1 (159375264-159375055) |
|
738-1052, gnl|xenTro1|scaffold_2049 (37090-37290) |
|
jca (1.93732) |
|
csp (1.93424) |
|
nlu (1.53345) |
|
cli (0.764059) |
|
cag (0.755972) |
|
cbl (0.573987) |
|
nbm (0.496623) |
|
cly (0.482567) |
|
nmm (0.398406) |
|
cov (0.396458) |
|
clu (0.358938) |
|
mcp (0.341297) |
|
hyp (0.285673) |
|
cga (0.279096) |
|
eru (0.240096) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nep (0.183925) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
nco (0.161734) |
|
ctl (0.153069) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ssp (0.13552) |
|
eep (0.122564) |
|
med (0.116252) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
jca (1.93732) |
|
csp (1.93424) |
|
nlu (1.53345) |
|
cli (0.764059) |
|
cag (0.755972) |
|
cbl (0.573987) |
|
nbm (0.496623) |
|
cly (0.482567) |
|
nmm (0.398406) |
|
cov (0.396458) |
|
clu (0.358938) |
|
mcp (0.341297) |
|
hyp (0.285673) |
|
cga (0.279096) |
|
eru (0.240096) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nep (0.183925) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
nco (0.161734) |
|
ctl (0.153069) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ssp (0.13552) |
|
eep (0.122564) |
|
med (0.116252) |
|
jej (0.0989218) |
|
eje (0.0988338) |
