Non-Coding RNA Search

Ss1.1-LyN1-MLN01B110048.5

Sequence:


               
               GTCGAATTTTTGTCTGCTAGCCTAGGAGACTTGAGGACTGGCCCTCCCCGAGTTTCCAGC
CCTAGAAACCCCGGCCTCTGCTCCAGGCAGTACCCCGTCCCCTGGGGGCCATGAGCCGGG
TCTCGGGGCTCGTGCCCTCTCGCTTCCTGACGCTCCTGGCGCATCTGGTGGTCGTCATCA
CCTTATTCTGGTCCAGGTGCCCTCCCAGCCGTCACTGAAATAGCGTTATTCATCAGCGTC
TTTGGGCTGAAAAAGAAACCTTTCTGATACCTTCATGACCGGAAGTACGGATGAAGGCTG
GAAGAGCGAGGGATCGCTCACCGTTCCTGGAAGAAGGAAGTCAGAGGCTCCAGCTCTTCC
TCCAAAACTGCGTCATGGAGGGCTTCCTTTTTAGTCTCAATGGCTGCAGTTTCCACCGGA
AGGTTGGTCCAGGTTCTGAATCCACTCAGTAGTCTGCAGGGAACTCCCTGCTGCTGCTGC
CTGGGAGGTGGTGATGACAACACGTTCAAGAGAATGCTGCTTCGCATTATATACACAGAC
TGCAGGAGTCTGAAGGCACGGATTGAACCCGTGGTCTATCATGGATAC------------
------------------------------------TGTTTTTAAACGGAGGTGATAAAT
AATCAAAATGCATTATTTCTTGGTTATGTTCTAAAT------------------------
------------------------------------------------GCTGTGTTATCT
TTCCAACTTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGAATTTTTGTCTGCTAGCCTAGGAGACTTGAGGACTGGCCCTCCCCGAGTTTCCAGC
CCTAGAAACCCCGGCCTCTGCTCCAGGCAGTACCCCGTCCCCTGGGGGCCATGAGCCGGG
TCTCGGGGCTCGTGCCCTCTCGCTTCCTGACGCTCCTGGCGCATCTGGTGGTCGTCATCA
CCTTATTCTGGTCCAGGTGCCCTCCCAGCCGTCACTGAAATAGCGTTATTCATCAGCGTC
TTTGGGCTGAAAAAGAAACCTTTCTGATACCTTCATGACCGGAAGTACGGATGAAGGCTG
GAAGAGCGAGGGATCGCTCACCGTTCCTGGAAGAAGGAAGTCAGAGGCTCCAGCTCTTCC
TCCAAAACTGCGTCATGGAGGGCTTCCTTTTTAGTCTCAATGGCTGCAGTTTCCACCGGA
AGGTTGGTCCAGGTTCTGAATCCACTCAGTAGTCTGCAGGGAACTCCCTGCTGCTGCTGC
CTGGGAGGTGGTGATGACAACACGTTCAAGAGAATGCTGCTTCGCATTATATACACAGAC
TGCAGGAGTCTGAAGGCACGGATTGAACCCGTGGTCTATCATGGATAC------------
------------------------------------TGTTTTTAAACGGAGGTGATAAAT
AATCAAAATGCATTATTTCTTGGTTATGTTCTAAAT------------------------
------------------------------------------------GCTGTGTTATCT
TTCCAACTTAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               37-155, - strand, RNAz p=0.628411

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-155, - strand, RNAz p=0.628411

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               27-151, + strand, RNAmicro p=0.994388

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               27-151, + strand, RNAmicro p=0.994388

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-197, gnl|bosTau2|chr2 (77514638-77514441)
               

               
               1-197, gnl|Hg17|chr17 (8020419-8020243)
               

               
               1-197, gnl|Mm7|chr11 (69152420-69152607)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr2 (77514638-77514441)
               

               
               1-197, gnl|Hg17|chr17 (8020419-8020243)
               

               
               1-197, gnl|Mm7|chr11 (69152420-69152607)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-197, gnl\|bosTau2\|chr2 (77514638-77514441)
	1-197, gnl\|Hg17\|chr17 (8020419-8020243)
	1-197, gnl\|Mm7\|chr11 (69152420-69152607)