Ss1.1-LyN1-MLN01B110050.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGAACTCGGGCGGCTTGCTGACGCCGGCGATTCTAACTGCCCTGAGTCTGGCGGCCC TCGGCTTCTTGGGCCTGACATTCTCGGCTTGGGGAACGCAGCTAAGACTCCGTGACCGCC TAGGCCCTCTCTCTGTCCGGGAAACCCCAGGAACGAGCCGGCGGCGTCCACGCTCCGAAG ACGAGAGTCTGAAAGGCCCAGGCAGTGCCTGGGAGGGAACACGCGAGGGGAGCCGGGGAG AACAGGGTGAAGTAACCATGCAGGCGTTTCTAAAAGGCACATCTATCAGCACTAAACCAC CATTGACCAAGGATCGAGGAGTAGCTGCCACTGCCAGAAGTAGTGGAGAGAACAAGAAAG CCAAACCTGTCCCATGGGTGGAAAAATATCGCCCAAAATGTGTAGATGAAGTTGCTTTCC AGGAAGAAGTGGTTGCAGTGCTGAAAAAGTCTTTAGAAGGAGCTGATCTCCCTAATCTCT TGTTTTATGGGCCTCCTGGAACTGGAAAAACATCCACTATTTTGGCAGCAGCTAGAGAAC TCTTTGGGCCTGAACTTTTTCGATTAAGAGTTCTTGAGTTAAATGCATCTGATGAACGTG GAATACAAGTTGTTAGAGAGAAAGTAAAGAATTTTGCCCAATTAACTGTGTCAGGAAGCC GTTCAGATGGGAAGCCATGCCCTCCTTTTAAGATTGTGATTCTGGATGAAGCAGATTCTA TGACCTCAGCTGCTCAGGCAGCTTTAAGACGTACCATGGAGAAGGAGTCTAAAACCACTC GATTCTGTCTCATCTGTAACTATGTCAGTCGAATAATTGAACCTCTGACCTCTAGATGTT CTAAATTCCGCTTCAAACCTCTGTCAGATAAAATTCAACAGCAGCGATTACTAGACATCG CTGATAAAGAACATGTCAAAATTAGTGATGAGGGAATAGCTTATCTTGTTAAAGTGTCAG AAGGAGACTTAAGAAAAGCCATTACATTTCTTCAAAGTGCTACTCGATTAACAGGTGGAA AGGAGGTCACAGAAAAGATGATCACAGATATTGCTGGGGTAGTACCGACTGAGACAATTG ATGGAGTACTTGCTGCATGTCAGAGTGGCTCTTTTGACAAACTAGAAGCTGTGGTAAAGG ACTTAATAGATGAGGGCCATGCAGCAACTCAATTTGTAAATCAGCTTCATGATGTGGTGG TAGAAAATGATAACCTTTCTGATAAGCAGAAGTCTGTTATTACAGAGAAACTTGCTGAAG CAGATAAATGCTTAGCTGATGGTGCTGATGAACATCTACAACTAATAAGCCTCTGTGCTA CAGTGATGCAACAGTTAACTCAGAATTGTTAAACCACACCCAGTTATGTATGCTTTTTAA CTGATTTGTAATAAAAATGACCAAAGCACCCTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGAACTCGGGCGGCTTGCTGACGCCGGCGATTCTAACTGCCCTGAGTCTGGCGGCCC TCGGCTTCTTGGGCCTGACATTCTCGGCTTGGGGAACGCAGCTAAGACTCCGTGACCGCC TAGGCCCTCTCTCTGTCCGGGAAACCCCAGGAACGAGCCGGCGGCGTCCACGCTCCGAAG ACGAGAGTCTGAAAGGCCCAGGCAGTGCCTGGGAGGGAACACGCGAGGGGAGCCGGGGAG AACAGGGTGAAGTAACCATGCAGGCGTTTCTAAAAGGCACATCTATCAGCACTAAACCAC CATTGACCAAGGATCGAGGAGTAGCTGCCACTGCCAGAAGTAGTGGAGAGAACAAGAAAG CCAAACCTGTCCCATGGGTGGAAAAATATCGCCCAAAATGTGTAGATGAAGTTGCTTTCC AGGAAGAAGTGGTTGCAGTGCTGAAAAAGTCTTTAGAAGGAGCTGATCTCCCTAATCTCT TGTTTTATGGGCCTCCTGGAACTGGAAAAACATCCACTATTTTGGCAGCAGCTAGAGAAC TCTTTGGGCCTGAACTTTTTCGATTAAGAGTTCTTGAGTTAAATGCATCTGATGAACGTG GAATACAAGTTGTTAGAGAGAAAGTAAAGAATTTTGCCCAATTAACTGTGTCAGGAAGCC GTTCAGATGGGAAGCCATGCCCTCCTTTTAAGATTGTGATTCTGGATGAAGCAGATTCTA TGACCTCAGCTGCTCAGGCAGCTTTAAGACGTACCATGGAGAAGGAGTCTAAAACCACTC GATTCTGTCTCATCTGTAACTATGTCAGTCGAATAATTGAACCTCTGACCTCTAGATGTT CTAAATTCCGCTTCAAACCTCTGTCAGATAAAATTCAACAGCAGCGATTACTAGACATCG CTGATAAAGAACATGTCAAAATTAGTGATGAGGGAATAGCTTATCTTGTTAAAGTGTCAG AAGGAGACTTAAGAAAAGCCATTACATTTCTTCAAAGTGCTACTCGATTAACAGGTGGAA AGGAGGTCACAGAAAAGATGATCACAGATATTGCTGGGGTAGTACCGACTGAGACAATTG ATGGAGTACTTGCTGCATGTCAGAGTGGCTCTTTTGACAAACTAGAAGCTGTGGTAAAGG ACTTAATAGATGAGGGCCATGCAGCAACTCAATTTGTAAATCAGCTTCATGATGTGGTGG TAGAAAATGATAACCTTTCTGATAAGCAGAAGTCTGTTATTACAGAGAAACTTGCTGAAG CAGATAAATGCTTAGCTGATGGTGCTGATGAACATCTACAACTAATAAGCCTCTGTGCTA CAGTGATGCAACAGTTAACTCAGAATTGTTAAACCACACCCAGTTATGTATGCTTTTTAA CTGATTTGTAATAAAAATGACCAAAGCACCCTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 243-388, gnl|bosTau2|chr1 (49545306-49545161) | |
| 243-388, gnl|Hg17|chr3 (188005218-188005074) | |
| 243-388, gnl|Mm7|chr16 (22786163-22786022) | |
| 663-811, gnl|bosTau2|chr1 (49534535-49534388) | |
| 663-811, gnl|canFam2|chr34 (22372617-22372777) | |
| 663-811, gnl|danRer3|chr9 (5007082-5006923) | |
| 663-811, gnl|dasNov1|scaffold_138028 (3421-3261) | |
| 663-811, gnl|echTel1|scaffold_313097 (34267-34107) | |
| 663-811, gnl|fr1|chrUn (223911557-223911408) | |
| 663-811, gnl|galGal2|chr9 (15496355-15496525) | |
| 663-811, gnl|hg17|chr3 (187993283-187993443) | |
| 663-811, gnl|Hg17|chr3 (187993442-187993295) | |
| 663-811, gnl|mm7|chr16 (22774326-22774485) | |
| 663-811, gnl|Mm7|chr16 (22774484-22774337) | |
| 663-811, gnl|monDom2|scaffold_28 (23811684-23811844) | |
| 663-811, gnl|oryCun1|scaffold_206335 (7865-7705) | |
| 663-811, gnl|panTro1|chr2 (192085250-192085410) | |
| 663-811, gnl|rheMac2|chr2 (179150153-179150313) | |
| 663-811, gnl|rn3|chr11 (80007026-80006867) | |
| 663-811, gnl|tetNig1|chrUn_random (49500199-49500050) | |
| 663-811, gnl|xenTro1|scaffold_344 (937112-937261) | |
| 931-1061, gnl|bosTau2|chr1 (49533613-49533483) | |
| 931-1061, gnl|canFam2|chr34 (22371538-22371631) | |
| 931-1061, gnl|danRer3|chr9 (5009345-5009252) | |
| 931-1061, gnl|dasNov1|scaffold_6907 (29760-29667) | |
| 931-1061, gnl|echTel1|scaffold_313097 (34974-34881) | |
| 931-1061, gnl|fr1|chrUn (223912051-223911958) | |
| 931-1061, gnl|galGal2|chr9 (15495009-15495102) | |
| 931-1061, gnl|hg17|chr3 (187992213-187992306) | |
| 931-1061, gnl|Hg17|chr3 (187992343-187992213) | |
| 931-1061, gnl|mm7|chr16 (22773226-22773319) | |
| 931-1061, gnl|Mm7|chr16 (22773356-22773226) | |
| 931-1061, gnl|monDom2|scaffold_28 (23810405-23810498) | |
| 931-1061, gnl|oryCun1|scaffold_206335 (9050-8957) | |
| 931-1061, gnl|panTro1|chr2 (192084177-192084270) | |
| 931-1061, gnl|rheMac2|chr2 (179149082-179149175) | |
| 931-1061, gnl|rn3|chr11 (80007573-80007480) | |
| 931-1061, gnl|tetNig1|chrUn_random (49500736-49500643) | |
| 931-1061, gnl|xenTro1|scaffold_344 (934321-934413) | |
| 1123-1263, gnl|bosTau2|chr1 (49532627-49532485) | |
| 1123-1263, gnl|Hg17|chr3 (187990760-187990625) | |
| 1123-1263, gnl|Mm7|chr16 (22772942-22772798) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 243-388, gnl|bosTau2|chr1 (49545306-49545161) | |
| 243-388, gnl|Hg17|chr3 (188005218-188005074) | |
| 243-388, gnl|Mm7|chr16 (22786163-22786022) | |
| 663-811, gnl|bosTau2|chr1 (49534535-49534388) | |
| 663-811, gnl|canFam2|chr34 (22372617-22372777) | |
| 663-811, gnl|danRer3|chr9 (5007082-5006923) | |
| 663-811, gnl|dasNov1|scaffold_138028 (3421-3261) | |
| 663-811, gnl|echTel1|scaffold_313097 (34267-34107) | |
| 663-811, gnl|fr1|chrUn (223911557-223911408) | |
| 663-811, gnl|galGal2|chr9 (15496355-15496525) | |
| 663-811, gnl|hg17|chr3 (187993283-187993443) | |
| 663-811, gnl|Hg17|chr3 (187993442-187993295) | |
| 663-811, gnl|mm7|chr16 (22774326-22774485) | |
| 663-811, gnl|Mm7|chr16 (22774484-22774337) | |
| 663-811, gnl|monDom2|scaffold_28 (23811684-23811844) | |
| 663-811, gnl|oryCun1|scaffold_206335 (7865-7705) | |
| 663-811, gnl|panTro1|chr2 (192085250-192085410) | |
| 663-811, gnl|rheMac2|chr2 (179150153-179150313) | |
| 663-811, gnl|rn3|chr11 (80007026-80006867) | |
| 663-811, gnl|tetNig1|chrUn_random (49500199-49500050) | |
| 663-811, gnl|xenTro1|scaffold_344 (937112-937261) | |
| 931-1061, gnl|bosTau2|chr1 (49533613-49533483) | |
| 931-1061, gnl|canFam2|chr34 (22371538-22371631) | |
| 931-1061, gnl|danRer3|chr9 (5009345-5009252) | |
| 931-1061, gnl|dasNov1|scaffold_6907 (29760-29667) | |
| 931-1061, gnl|echTel1|scaffold_313097 (34974-34881) | |
| 931-1061, gnl|fr1|chrUn (223912051-223911958) | |
| 931-1061, gnl|galGal2|chr9 (15495009-15495102) | |
| 931-1061, gnl|hg17|chr3 (187992213-187992306) | |
| 931-1061, gnl|Hg17|chr3 (187992343-187992213) | |
| 931-1061, gnl|mm7|chr16 (22773226-22773319) | |
| 931-1061, gnl|Mm7|chr16 (22773356-22773226) | |
| 931-1061, gnl|monDom2|scaffold_28 (23810405-23810498) | |
| 931-1061, gnl|oryCun1|scaffold_206335 (9050-8957) | |
| 931-1061, gnl|panTro1|chr2 (192084177-192084270) | |
| 931-1061, gnl|rheMac2|chr2 (179149082-179149175) | |
| 931-1061, gnl|rn3|chr11 (80007573-80007480) | |
| 931-1061, gnl|tetNig1|chrUn_random (49500736-49500643) | |
| 931-1061, gnl|xenTro1|scaffold_344 (934321-934413) | |
| 1123-1263, gnl|bosTau2|chr1 (49532627-49532485) | |
| 1123-1263, gnl|Hg17|chr3 (187990760-187990625) | |
| 1123-1263, gnl|Mm7|chr16 (22772942-22772798) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| thg (0.380373) | |
| vin (0.332557) | |
| cte (0.29274) | |
| spl (0.286369) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| nlu (0.191681) | |
| mga (0.160205) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.380373) | |
| vin (0.332557) | |
| cte (0.29274) | |
| spl (0.286369) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| nlu (0.191681) | |
| mga (0.160205) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| eje (0.0988338) | |
| ldo (0.0970026) |