Non-Coding RNA Search

Ss1.1-LyN1-MLN01B110072.5

Sequence:


               
               TCGGCCTCGGTGGGAGACCGGGTGGGAGGAGCGGCGGTGACGTGCAGGTCACATACGCCA
TGGCTATGACTAGTGTCCGATTGCCCAGCAGCGTTTTAAGAAAGCCAGAGGCCTGGATCG
GACTCTGTGGAGCGCTACGAGGGACACCTTCACACAAGCGCTGTGCATCCTTGAACCGAT
ACATCTGTTTTTCTAGTACCAAGTTAAATGCATCAAATTATAAAACTCTTTTCTATAACA
TTTTCTCACTGAGATTCCCAGGGCTTTTAATATCTCCAGAATATATTTTCCCATTTTCAA
CAAGACTCAAAAGTAATATAAACTCTAAAAAGTCTGCTGAAAAGGCTCTGCAAAAAGTAG
AAGATGAAGGGGACTCTGATGAAGGGAGTGATCATAACGAGATGAGTGAGCAGGAGGAGG
AGCTGGAGGACGATCCCAGCGTAGTGAAAGACTACAAAGACCTGGACAAAGTAGTGCAGT
CTTTTCGGTATGATGTCATCCTGAAGACAGGCCTAGATGTTGGAAGAAACAAAGTGGAAG
ATGCATTCTACAAAGGCGAACTCAGGCTGAATGGGGAAAAATTGTGGAAGAAAAGCAGAA
CGGTAAAAGTGGGAGATACATTGGATCTTCTCATTGAAGATGATAAAGCAGCAGAAACAG
AGACAGTGATGCGGATTCTCCTGAAGAAAGTGCTTGAAGAGAAGACTGACAGTGAGAAAT
ACAGAGTGGTGTTACGGCGGTGGAAAAAGTTAAAACTGCCTAAAAAGAGTATGCCCAAAT
AAATGGATTGCTTTTTAAAAGTGATAAAGCTGCTTTCTAGTGGTGGGGAAGGGCCCAGAT
TAAAAAGAGGACTTGTTCATTAAAGTTCACCTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGCCTCGGTGGGAGACCGGGTGGGAGGAGCGGCGGTGACGTGCAGGTCACATACGCCA
TGGCTATGACTAGTGTCCGATTGCCCAGCAGCGTTTTAAGAAAGCCAGAGGCCTGGATCG
GACTCTGTGGAGCGCTACGAGGGACACCTTCACACAAGCGCTGTGCATCCTTGAACCGAT
ACATCTGTTTTTCTAGTACCAAGTTAAATGCATCAAATTATAAAACTCTTTTCTATAACA
TTTTCTCACTGAGATTCCCAGGGCTTTTAATATCTCCAGAATATATTTTCCCATTTTCAA
CAAGACTCAAAAGTAATATAAACTCTAAAAAGTCTGCTGAAAAGGCTCTGCAAAAAGTAG
AAGATGAAGGGGACTCTGATGAAGGGAGTGATCATAACGAGATGAGTGAGCAGGAGGAGG
AGCTGGAGGACGATCCCAGCGTAGTGAAAGACTACAAAGACCTGGACAAAGTAGTGCAGT
CTTTTCGGTATGATGTCATCCTGAAGACAGGCCTAGATGTTGGAAGAAACAAAGTGGAAG
ATGCATTCTACAAAGGCGAACTCAGGCTGAATGGGGAAAAATTGTGGAAGAAAAGCAGAA
CGGTAAAAGTGGGAGATACATTGGATCTTCTCATTGAAGATGATAAAGCAGCAGAAACAG
AGACAGTGATGCGGATTCTCCTGAAGAAAGTGCTTGAAGAGAAGACTGACAGTGAGAAAT
ACAGAGTGGTGTTACGGCGGTGGAAAAAGTTAAAACTGCCTAAAAAGAGTATGCCCAAAT
AAATGGATTGCTTTTTAAAAGTGATAAAGCTGCTTTCTAGTGGTGGGGAAGGGCCCAGAT
TAAAAAGAGGACTTGTTCATTAAAGTTCACCTATGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57094690|ref|XP_532251.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57094690|ref|XP_532251.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               407-547, + strand, RNAz p=0.58664

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-547, + strand, RNAz p=0.58664

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               12-547, gnl|bosTau2|chr3 (45172780-45173315)
               

               
               12-547, gnl|Hg17|chr21 (31746636-31747203)
               

               
               12-547, gnl|Mm7|chr10 (43343502-43343020)
               


               
               53-529, gnl|bosTau2|chr21 (33927227-33927689)
               

               
               53-529, gnl|Hg17|chr6 (107467649-107468127)
               

               
               53-529, gnl|Mm7|chr10 (43343483-43343018)
               


               
               598-868, gnl|bosTau2|chr3 (45173291-45173559)
               

               
               598-868, gnl|Hg17|chr21 (31747105-31747471)
               

               
               598-868, gnl|Mm7|chr10 (43335750-43335486)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-547, gnl|bosTau2|chr3 (45172780-45173315)
               

               
               12-547, gnl|Hg17|chr21 (31746636-31747203)
               

               
               12-547, gnl|Mm7|chr10 (43343502-43343020)
               


               
               53-529, gnl|bosTau2|chr21 (33927227-33927689)
               

               
               53-529, gnl|Hg17|chr6 (107467649-107468127)
               

               
               53-529, gnl|Mm7|chr10 (43343483-43343018)
               


               
               598-868, gnl|bosTau2|chr3 (45173291-45173559)
               

               
               598-868, gnl|Hg17|chr21 (31747105-31747471)
               

               
               598-868, gnl|Mm7|chr10 (43335750-43335486)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

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               cte (0.87822)
               

               
               tes (0.831255)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               tes (0.831255)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	12-547, gnl\|bosTau2\|chr3 (45172780-45173315)
	12-547, gnl\|Hg17\|chr21 (31746636-31747203)
	12-547, gnl\|Mm7\|chr10 (43343502-43343020)

	53-529, gnl\|bosTau2\|chr21 (33927227-33927689)
	53-529, gnl\|Hg17\|chr6 (107467649-107468127)
	53-529, gnl\|Mm7\|chr10 (43343483-43343018)

	598-868, gnl\|bosTau2\|chr3 (45173291-45173559)
	598-868, gnl\|Hg17\|chr21 (31747105-31747471)
	598-868, gnl\|Mm7\|chr10 (43335750-43335486)

	cte (0.87822)
	tes (0.831255)
	mgp (0.461361)
	lin (0.436808)
	hea (0.408998)
	sto (0.179824)
	cut (0.169924)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	csk (0.140746)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	jca (0.11396)
	spc (0.113366)
	ldo (0.0970026)