Non-Coding RNA Search

Ss1.1-LyN1-MLN01B120030.5

Sequence:


               
               GGGTGTGTGGGTGAACCCTGTGTCCCGTGCCCGCTGAGGAGATGGATGAGGATGGGCTTC
CTCTCATGGGGTCAGGCATAGACCACCGGGTTGGGCTGGCCTGGTCGGGGAGGGGTGTGT
GGGTGAACCCTGTGTCCCGTGCCCGCTGAGGAGATGGATGAGGATGGGCTTCCTCTCATG
GGGTCAGGCATAGACCTGACTAAGGTGCCAGCTATTCAACAGAAAAGAACGGTGGCATTT
CTAAACCAATTTGTGGTGCACACTGTACAGTTCCTCAACCGCTTTTCTACAGTTTGTGAG
GAGAAACTGGCAGACCTTTCTCTTCGAATCCAGCAAATTGAAACAACTCTCAATATTTTA
GATGCAAAGTTGTCATCTATCCCAGGCCTAGATGATGTCACATTTGAAGTATCTCCTATA
AGTGTCACTAGGATCACAAATGAATCACATTCTGAAACCACTTCAGAGCAATTACAGCAG
AACAGTTTCCAAGACTCCGGACCACAGGAAAGTGAAGTAACACCAGAAAATACCTTAACT
GTAGCCAAGGATCCAAGATACGCCAGATATCTCAAAATGGTTCAAGTGGGTGTTCCAGTG
ATGGCAATAAGAAACAAAATGATTTCAGAGGGACTAGACCCAGATCTTCTTGAGAGGCCA
GATGCTCCAGTGCCTGATGGTGAAGGTGAAAAAAATACAGAAGAAAGTTCTGATAGCGAA
TCTTCTTTTAGTGACTAAGCTTGATTTTGGTAACAACTGCATATTCATGTATTGGTGCAT
ATTTATATTCTATTAAAAGAAGAGCCTTAACTTTAACTCTTAGTCACAAAAACATCAAAC
GGCTACATATCCACCACCAAGCTTCTTCAATGTTAAAAAAATAAAATAAAATAAAGCATT
TATAATAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGTGTGGGTGAACCCTGTGTCCCGTGCCCGCTGAGGAGATGGATGAGGATGGGCTTC
CTCTCATGGGGTCAGGCATAGACCACCGGGTTGGGCTGGCCTGGTCGGGGAGGGGTGTGT
GGGTGAACCCTGTGTCCCGTGCCCGCTGAGGAGATGGATGAGGATGGGCTTCCTCTCATG
GGGTCAGGCATAGACCTGACTAAGGTGCCAGCTATTCAACAGAAAAGAACGGTGGCATTT
CTAAACCAATTTGTGGTGCACACTGTACAGTTCCTCAACCGCTTTTCTACAGTTTGTGAG
GAGAAACTGGCAGACCTTTCTCTTCGAATCCAGCAAATTGAAACAACTCTCAATATTTTA
GATGCAAAGTTGTCATCTATCCCAGGCCTAGATGATGTCACATTTGAAGTATCTCCTATA
AGTGTCACTAGGATCACAAATGAATCACATTCTGAAACCACTTCAGAGCAATTACAGCAG
AACAGTTTCCAAGACTCCGGACCACAGGAAAGTGAAGTAACACCAGAAAATACCTTAACT
GTAGCCAAGGATCCAAGATACGCCAGATATCTCAAAATGGTTCAAGTGGGTGTTCCAGTG
ATGGCAATAAGAAACAAAATGATTTCAGAGGGACTAGACCCAGATCTTCTTGAGAGGCCA
GATGCTCCAGTGCCTGATGGTGAAGGTGAAAAAAATACAGAAGAAAGTTCTGATAGCGAA
TCTTCTTTTAGTGACTAAGCTTGATTTTGGTAACAACTGCATATTCATGTATTGGTGCAT
ATTTATATTCTATTAAAAGAAGAGCCTTAACTTTAACTCTTAGTCACAAAAACATCAAAC
GGCTACATATCCACCACCAAGCTTCTTCAATGTTAAAAAAATAAAATAAAATAAAGCATT
TATAATAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57096799|ref|XP_532668.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57096799|ref|XP_532668.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               85-203, + strand, RNAz p=0.715929

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               85-203, + strand, RNAz p=0.715929

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               85-914, gnl|bosTau2|chr10 (12484641-12483815)
               

               
               85-914, gnl|Hg17|chr8 (99495256-99494122)
               

               
               85-914, gnl|Mm7|chr18 (45796696-45795934)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-914, gnl|bosTau2|chr10 (12484641-12483815)
               

               
               85-914, gnl|Hg17|chr8 (99495256-99494122)
               

               
               85-914, gnl|Mm7|chr18 (45796696-45795934)

Expressed library(ies): 34 entry(ies)

More info

Expressed library(ies): 34 entry(ies)

Help | Less info


               
               tes (0.623441)
               

               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               ret (0.514933)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	85-914, gnl\|bosTau2\|chr10 (12484641-12483815)
	85-914, gnl\|Hg17\|chr8 (99495256-99494122)
	85-914, gnl\|Mm7\|chr18 (45796696-45795934)

	tes (0.623441)
	ret (0.514933)
	lin (0.436808)
	aor (0.390549)
	gul (0.355177)
	fty (0.351679)
	rec (0.346141)
	cte (0.29274)
	lnt (0.284616)
	thg (0.253582)
	cbe (0.239234)
	pan (0.23596)
	ecc (0.23007)
	spc (0.226732)
	hea (0.204499)
	col (0.195008)
	nep (0.183925)
	sag (0.182715)
	duo (0.172801)
	csp (0.161186)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	cov (0.132153)
	kid (0.129735)
	ese (0.126502)
	ebs (0.118301)
	ldo (0.0970026)