Non-Coding RNA Search

Ss1.1-LyN1-MLN01B120053.5

Sequence:


               
               ACGTGAGAGGGTGATCGGGAAGTGAGAGTGGAGGCTGCGGAGGACGCCTCCGCCCAGGCG
GTGGTATAAAGCTGACGGGACGTCAGTATTCTGTTCCTTTCTTTCTCCATTCCTGGGTGA
GACGCCCCTTCGTTGCTGGGGAGCCGGGGTCTCCACTTGCCTTTTTTAAAGGGCTGGTGA
AAACCCCTGAACATGTGGAATCCCAATGCCGGGCAGCCAGGGCCAAATCCTTACCCGCCT
AACGTTGGATACCCTGGAGGTTGCCATCCTACCCATCCACCATCTGCCAACCCTCCCTTT
CCTCCAGGCCCCCTTCCCACTCCTCCAGGAGTGCCCCAGGGGAATCCAGCTTTTCCCCCT
GGCGGGCCTTGTTATCCTGTGCCACAGCCAGGGCATCCAGGATGCCAGCCCTCAGGTCCC
TACCCACCACCTGCCCCTTGCATGCCACCTGTGAATCCATTGGCTCCTGGCATGGTAGGA
CCAGGCATGGTGATGGACAAGAAGATGAAGAAGAAAATGAAGAAAGCTCATAAAAAGAAG
CACAAACACCACAAGCATGGCAAGCATTCCTCCTCCTCCTCCTCTTCCAGCAGTGACTCT
GACTGAATACAGGGCCTGGACCCTTCCCTCAAGTCTCTCCAGTTCTGCTCTCCCATCAAG
CTTCAGATGCCATCTTGTCCCGGGGGAAATTAGCCCTCGTGTCCTACCCTTCCACCCTCA
CAGTCTGGGCCTCATTCTGCTGTTCATCCCTCACTGGCTAGAGAAAATGGGGAAAGAATT
GCCATGAGCTAGTTTGGATAGAACTGTCAGCTGATGAGTTTTGCAGGAGAACTATTTTTT
GAAGACGGTGAGATCTTTGGGCTAAATGAGGAAGACAAGTCTAAGATCTGCAAAATGTGA
TTCTTTACTCTTCCTTTGTAATACTTCTGATTGGGGAGATGCTGTGAAAATTTAATTATG
GGGGAAAAAAACTGTACCTTTCTTGTGATTGTGGCATACTTGGGTGATTTAGTGGTGAAT
AAACATTTCCCAGCAAGCTCTTTATTGGTTGCATTAACTGCAAGTCTACTGAGAAGTGGA
GTCCACTTGGTTAATGAGCTCTGACTGCTATTTTGAAAACTAATCTCTACTCCTTGGCAC
AGTAAGCCATCTCAGATCCTCCTCTCACTCTCCAACTCTCAGTCCAAATAAAGCTGTTTC
TCCTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTGAGAGGGTGATCGGGAAGTGAGAGTGGAGGCTGCGGAGGACGCCTCCGCCCAGGCG
GTGGTATAAAGCTGACGGGACGTCAGTATTCTGTTCCTTTCTTTCTCCATTCCTGGGTGA
GACGCCCCTTCGTTGCTGGGGAGCCGGGGTCTCCACTTGCCTTTTTTAAAGGGCTGGTGA
AAACCCCTGAACATGTGGAATCCCAATGCCGGGCAGCCAGGGCCAAATCCTTACCCGCCT
AACGTTGGATACCCTGGAGGTTGCCATCCTACCCATCCACCATCTGCCAACCCTCCCTTT
CCTCCAGGCCCCCTTCCCACTCCTCCAGGAGTGCCCCAGGGGAATCCAGCTTTTCCCCCT
GGCGGGCCTTGTTATCCTGTGCCACAGCCAGGGCATCCAGGATGCCAGCCCTCAGGTCCC
TACCCACCACCTGCCCCTTGCATGCCACCTGTGAATCCATTGGCTCCTGGCATGGTAGGA
CCAGGCATGGTGATGGACAAGAAGATGAAGAAGAAAATGAAGAAAGCTCATAAAAAGAAG
CACAAACACCACAAGCATGGCAAGCATTCCTCCTCCTCCTCCTCTTCCAGCAGTGACTCT
GACTGAATACAGGGCCTGGACCCTTCCCTCAAGTCTCTCCAGTTCTGCTCTCCCATCAAG
CTTCAGATGCCATCTTGTCCCGGGGGAAATTAGCCCTCGTGTCCTACCCTTCCACCCTCA
CAGTCTGGGCCTCATTCTGCTGTTCATCCCTCACTGGCTAGAGAAAATGGGGAAAGAATT
GCCATGAGCTAGTTTGGATAGAACTGTCAGCTGATGAGTTTTGCAGGAGAACTATTTTTT
GAAGACGGTGAGATCTTTGGGCTAAATGAGGAAGACAAGTCTAAGATCTGCAAAATGTGA
TTCTTTACTCTTCCTTTGTAATACTTCTGATTGGGGAGATGCTGTGAAAATTTAATTATG
GGGGAAAAAAACTGTACCTTTCTTGTGATTGTGGCATACTTGGGTGATTTAGTGGTGAAT
AAACATTTCCCAGCAAGCTCTTTATTGGTTGCATTAACTGCAAGTCTACTGAGAAGTGGA
GTCCACTTGGTTAATGAGCTCTGACTGCTATTTTGAAAACTAATCTCTACTCCTTGGCAC
AGTAAGCCATCTCAGATCCTCCTCTCACTCTCCAACTCTCAGTCCAAATAAAGCTGTTTC
TCCTAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NZ81_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NZ81_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               201-425, - strand, RNAz p=0.999853

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-425, - strand, RNAz p=0.999853

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               201-425, BW985188 full-length enriched swine cDNA library, adult intestine 
(dbj|BW985188.1|), blast E-value=0, identity=100% 
               

               
               201-425, DB784554 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB784554.1|), blast E-value=0, identity=100% 
               

               
               201-425, DB786367 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB786367.1|), blast E-value=0, identity=100% 
               

               
               201-425, DB802454 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB802454.1|), blast E-value=0, identity=100% 
               

               
               201-425, DB804511 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB804511.1|), blast E-value=0, identity=100% 
               

               
               201-425, EST-AR156A02 Infected Porcine Peripheral Blood Cell cDNA library 
(gb|DV225651.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               201-425, BW985188 full-length enriched swine cDNA library, adult intestine 
(dbj|BW985188.1|), blast E-value=0, identity=100% 
               

               
               201-425, DB784554 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB784554.1|), blast E-value=0, identity=100% 
               

               
               201-425, DB786367 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB786367.1|), blast E-value=0, identity=100% 
               

               
               201-425, DB802454 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB802454.1|), blast E-value=0, identity=100% 
               

               
               201-425, DB804511 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB804511.1|), blast E-value=0, identity=100% 
               

               
               201-425, EST-AR156A02 Infected Porcine Peripheral Blood Cell cDNA library 
(gb|DV225651.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               171-756, gnl|bosTau2|chr25 (24787721-24788316)
               

               
               171-756, gnl|Hg17|chr19 (45141449-45140847)
               

               
               171-756, gnl|Mm7|chr15 (102446263-102448512)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               171-756, gnl|bosTau2|chr25 (24787721-24788316)
               

               
               171-756, gnl|Hg17|chr19 (45141449-45140847)
               

               
               171-756, gnl|Mm7|chr15 (102446263-102448512)

Expressed library(ies): 43 entry(ies)

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Expressed library(ies): 43 entry(ies)

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               cje (4.7918)
               

               
               duo (3.45602)
               

               
               sin (2.62421)
               

               
               jej (2.07736)
               

               
               cst (1.96051)
               

               
               col (1.17005)
               

               
               ill (0.877963)
               

               
               nco (0.808669)
               

               
               elu (0.770713)
               

               
               rec (0.692281)
               

               
               eye (0.682012)
               

               
               nje (0.66368)
               

               
               sme (0.610874)
               

               
               lin (0.582411)
               

               
               ute (0.531138)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               ste (0.405625)
               

               
               cov (0.396458)
               

               
               cmu (0.372787)
               

               
               cly (0.361925)
               

               
               sto (0.359648)
               

               
               med (0.348756)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               lun (0.300978)
               

               
               eje (0.296501)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (4.7918)
               

               
               duo (3.45602)
               

               
               sin (2.62421)
               

               
               jej (2.07736)
               

               
               cst (1.96051)
               

               
               col (1.17005)
               

               
               ill (0.877963)
               

               
               nco (0.808669)
               

               
               elu (0.770713)
               

               
               rec (0.692281)
               

               
               eye (0.682012)
               

               
               nje (0.66368)
               

               
               sme (0.610874)
               

               
               lin (0.582411)
               

               
               ute (0.531138)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               ste (0.405625)
               

               
               cov (0.396458)
               

               
               cmu (0.372787)
               

               
               cly (0.361925)
               

               
               sto (0.359648)
               

               
               med (0.348756)
               

               
               cki (0.330469)
               

               
               cli (0.305623)
               

               
               lun (0.300978)
               

               
               eje (0.296501)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	201-425, BW985188 full-length enriched swine cDNA library, adult intestine (dbj\|BW985188.1\|), blast E-value=0, identity=100%
	201-425, DB784554 full-length enriched swine cDNA library, adult adrenal (dbj\|DB784554.1\|), blast E-value=0, identity=100%
	201-425, DB786367 full-length enriched swine cDNA library, adult adrenal (dbj\|DB786367.1\|), blast E-value=0, identity=100%
	201-425, DB802454 full-length enriched swine cDNA library, adult skin Sus (dbj\|DB802454.1\|), blast E-value=0, identity=100%
	201-425, DB804511 full-length enriched swine cDNA library, adult skin Sus (dbj\|DB804511.1\|), blast E-value=0, identity=100%
	201-425, EST-AR156A02 Infected Porcine Peripheral Blood Cell cDNA library (gb\|DV225651.1\|), blast E-value=0, identity=100%

	171-756, gnl\|bosTau2\|chr25 (24787721-24788316)
	171-756, gnl\|Hg17\|chr19 (45141449-45140847)
	171-756, gnl\|Mm7\|chr15 (102446263-102448512)

	cje (4.7918)
	duo (3.45602)
	sin (2.62421)
	jej (2.07736)
	cst (1.96051)
	col (1.17005)
	ill (0.877963)
	nco (0.808669)
	elu (0.770713)
	rec (0.692281)
	eye (0.682012)
	nje (0.66368)
	sme (0.610874)
	lin (0.582411)
	ute (0.531138)
	cag (0.453583)
	amn (0.417711)
	ste (0.405625)
	cov (0.396458)
	cmu (0.372787)
	cly (0.361925)
	sto (0.359648)
	med (0.348756)
	cki (0.330469)
	cli (0.305623)
	lun (0.300978)
	eje (0.296501)
	fce (0.271592)
	bla (0.248694)
	pgl (0.236967)
	hea (0.204499)
	aor (0.195274)
	gul (0.177588)
	mcp (0.170648)
	csp (0.161186)
	fat (0.147427)
	ski (0.146735)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	pla (0.133672)
	clu (0.119646)
	jca (0.11396)