Non-Coding RNA Search

Ss1.1-LyN1-MLN01B120076.5

Sequence:


               
               AAAATTATGGCAGGAACAAGGAGGAGCTGAGTCCTGCTTGGCTAAAAGATGAAGAGACCA
CACATTCCTCCTTCTCAAGGTCAAGGAGACCTCCCAAACTACACATGTGCAGAAAGGTTC
CTCAGGGGTCAGAGAAGGGAGGGGGCACCCGACCATAATACTTCCTGTCAACTTGCCAGA
AACTCTTGTGCTAGAATCCAGCGTGGCTAAAAGATGCACACACACTCACAGGGACCCTGA
GGCAGGCCAAACATGAACTCAAGCCAGACAGAGCCAAATGACTAGCCAGAGGAACCCCAG
AAAAACTGTCCCCATAACTAGCCCCAAAGCACATGGCTCTCTCTCTGTCTCTGTCTTTCT
CTCTCTGAGCCCTTCTGTGCTTTCTCCACACCCATCTTCTCTCCTAATAAACCTTCTACT
TGCCTCACTCCTCTCAGTCTCCTTGCTGGATTTCTTCTCCAGAGAGACAAGGACTGGGGA
CCTACATCAAGCCCCTGTGGTCCAGTGGTTAGGATTTAGCATGCTCACCCCACAGCCACT
CCTGGGAGAACACCATCAACTGCTCTAGTGTGGCCTACAAATGTGATTGGGAAGGCCACA
ATTACTCTTACTCGCTCCCCTCCATACCCTCCCATGCATAATCTAAGTCATAAGTATTCA
AAGAGGTCCTTTATGTTATAAATTAGGATTGATCATTACGAAATAGAGGGAGTATTCTGC
TTATAACAGTTTTTCTTATGTCATACATTGTAGTTATACAAAAACAAAGCAAACAAAATG
AAACCCAGGGACTCCAGTGCCTGCTCAAGTGCTACTGTTTTTTCATCCTCATAATTTTTG
CTCTGTTTGTCTCTCTCAGAGAAGTTAAGTAAGAGTTGGCCGTTGGGCACACTGAATTTC
ATGATGAAAGATACCGGATGTACCAGCCAGGTGTGTGTTCATAAATAAGCTGTTGTGCAA
TACATTTTGGGATTGCTGCCTGTTATTTAACAAAAGAATAAATAGGAACAACTGAAAGAG
CCACCTTGGAAAGTATCTTTCCCAAAACAAATAAGAGAAGCAGGAATGTGGGAATTCTAA
CTTCCTCCTAATCATATAAGTATTTGTATAATTCTCTGCTATTTGCCTAATGTCGCCTGT
GGAAATGCTTTTGGAGAATTAGAAGGTCTTTTTCCTTCCATAATCTTTGCGATACTGGGG
ATTTATCCTCTACTAAAATGGGCCTAGTGCCTTTTAATATGAAAATTATCCTAGTTCAAG
AGTAAATGGATTGCTGGCACAGCACTGTAAATCACCTGTACTTCAATAAAGCAAAGTAAA
TTGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATTATGGCAGGAACAAGGAGGAGCTGAGTCCTGCTTGGCTAAAAGATGAAGAGACCA
CACATTCCTCCTTCTCAAGGTCAAGGAGACCTCCCAAACTACACATGTGCAGAAAGGTTC
CTCAGGGGTCAGAGAAGGGAGGGGGCACCCGACCATAATACTTCCTGTCAACTTGCCAGA
AACTCTTGTGCTAGAATCCAGCGTGGCTAAAAGATGCACACACACTCACAGGGACCCTGA
GGCAGGCCAAACATGAACTCAAGCCAGACAGAGCCAAATGACTAGCCAGAGGAACCCCAG
AAAAACTGTCCCCATAACTAGCCCCAAAGCACATGGCTCTCTCTCTGTCTCTGTCTTTCT
CTCTCTGAGCCCTTCTGTGCTTTCTCCACACCCATCTTCTCTCCTAATAAACCTTCTACT
TGCCTCACTCCTCTCAGTCTCCTTGCTGGATTTCTTCTCCAGAGAGACAAGGACTGGGGA
CCTACATCAAGCCCCTGTGGTCCAGTGGTTAGGATTTAGCATGCTCACCCCACAGCCACT
CCTGGGAGAACACCATCAACTGCTCTAGTGTGGCCTACAAATGTGATTGGGAAGGCCACA
ATTACTCTTACTCGCTCCCCTCCATACCCTCCCATGCATAATCTAAGTCATAAGTATTCA
AAGAGGTCCTTTATGTTATAAATTAGGATTGATCATTACGAAATAGAGGGAGTATTCTGC
TTATAACAGTTTTTCTTATGTCATACATTGTAGTTATACAAAAACAAAGCAAACAAAATG
AAACCCAGGGACTCCAGTGCCTGCTCAAGTGCTACTGTTTTTTCATCCTCATAATTTTTG
CTCTGTTTGTCTCTCTCAGAGAAGTTAAGTAAGAGTTGGCCGTTGGGCACACTGAATTTC
ATGATGAAAGATACCGGATGTACCAGCCAGGTGTGTGTTCATAAATAAGCTGTTGTGCAA
TACATTTTGGGATTGCTGCCTGTTATTTAACAAAAGAATAAATAGGAACAACTGAAAGAG
CCACCTTGGAAAGTATCTTTCCCAAAACAAATAAGAGAAGCAGGAATGTGGGAATTCTAA
CTTCCTCCTAATCATATAAGTATTTGTATAATTCTCTGCTATTTGCCTAATGTCGCCTGT
GGAAATGCTTTTGGAGAATTAGAAGGTCTTTTTCCTTCCATAATCTTTGCGATACTGGGG
ATTTATCCTCTACTAAAATGGGCCTAGTGCCTTTTAATATGAAAATTATCCTAGTTCAAG
AGTAAATGGATTGCTGGCACAGCACTGTAAATCACCTGTACTTCAATAAAGCAAAGTAAA
TTGAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1-496, gnl|bosTau2|chr2 (38813159-38812666)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-496, gnl|bosTau2|chr2 (38813159-38812666)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               lun (1.65538)
               

               
               sin (0.524843)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (1.65538)
               

               
               sin (0.524843)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	lun (1.65538)
	sin (0.524843)
	rec (0.17307)
	duo (0.172801)
	cli (0.152812)
	liv (0.146284)
	kid (0.129735)
	thg (0.126791)
	bla (0.124347)
	cty (0.10408)