Non-Coding RNA Search

Ss1.1-LyN1-MLN01C010022.5

Sequence:


               
               CCGCCTTTCCCTCCTCGCGAACCCTGGGGCCTGGGGCGCGCGAGGAGGTGCTGAGCCGGG
GCGGTGGGGGACACGGCGGCCACCGCGGGGCTCGGTCGGGCAACGGCGGCGGCGGCGGCG
GCGGCGACGACGGCGGCGGCGGCGGCGGCGGCGACTGGCCCTCCTCCTCCCTCACTCAAT
TGCTCCTCCTTTTTTTCCTCCTCCTTTCCTTTCCGGCCGAGTATCGTCCACTTCCCCTAG
CGGCCGCCCTGATCCTACGTAAAGGCATGACTTCACGGCACCTCAGGGAAGATAGGGTGC
AAGCCCAGAAACTATTTCCTCACCACCACTTGTTGAAAAACTGATTTGAAGGCATCTCTG
GATTTGAACAAACGGAAAGTGCCAGGATTTTATGCGTCTTTGGTTTTGCGCTAAAGACCC
ATCACTACTAGGCATCAAGACGAAAAAAACTGGAAACTAATCCGAACCTAATTCATCAGA
ATGGAAAGATTTGTAGTGACAGCACCACCTGCTAGAAACCGGTCTAAGACTGCTTTGTAT
GTGACTCCCCTGGATCGAGTCACTGAGTTTGGAGGTGAGCTGCATGAAGATGGAGGAAAA
CTCTTCTGCACTTCTTGCAATGTGGTTCTGAATCATGTTCGCAAGTCTGCCATTAGTGAC
CACCTCAAGTCAAAGACTCACACAAAGAGAAAGGCAGAATTTGAAGAGCAGAATGTGAGA
AAGAAGCAGAGGCCTCTAACTGCATCCCTTCAGTGCAACAGTACTGCGCAAACAGAGAAA
GTCAGTGTTATCCAGGACTTTGTGAAAATGTGCCTGGAAGCTAACATCCCACTTGAGAAG
GCTGATCACCCAGCAGTCCGTGCTTTCCTGTCTCGCCATGTGAAGAATGGAGGCTCCATA
CCCAAGTCAGACCAGCTGAGGAGAGCATATCTGCCTGATGGATACGAGAATGAGAATCAA
CTCCTTAACTCACAAGATTGTTGACAAGGAGGTTACCACCATTGTGATCAAGATAAATAA
TGTGGAGTATTAAAGTTATGTGTTGATTGTGTGGTTCATTTTTATATTTATTTCATTTTA
AATCATGTGATGCAGAATAGTTTTGCAATGTATATATATAGTTGCAGGCAAAAAAAAAAA
AACCACAAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCTTTCCCTCCTCGCGAACCCTGGGGCCTGGGGCGCGCGAGGAGGTGCTGAGCCGGG
GCGGTGGGGGACACGGCGGCCACCGCGGGGCTCGGTCGGGCAACGGCGGCGGCGGCGGCG
GCGGCGACGACGGCGGCGGCGGCGGCGGCGGCGACTGGCCCTCCTCCTCCCTCACTCAAT
TGCTCCTCCTTTTTTTCCTCCTCCTTTCCTTTCCGGCCGAGTATCGTCCACTTCCCCTAG
CGGCCGCCCTGATCCTACGTAAAGGCATGACTTCACGGCACCTCAGGGAAGATAGGGTGC
AAGCCCAGAAACTATTTCCTCACCACCACTTGTTGAAAAACTGATTTGAAGGCATCTCTG
GATTTGAACAAACGGAAAGTGCCAGGATTTTATGCGTCTTTGGTTTTGCGCTAAAGACCC
ATCACTACTAGGCATCAAGACGAAAAAAACTGGAAACTAATCCGAACCTAATTCATCAGA
ATGGAAAGATTTGTAGTGACAGCACCACCTGCTAGAAACCGGTCTAAGACTGCTTTGTAT
GTGACTCCCCTGGATCGAGTCACTGAGTTTGGAGGTGAGCTGCATGAAGATGGAGGAAAA
CTCTTCTGCACTTCTTGCAATGTGGTTCTGAATCATGTTCGCAAGTCTGCCATTAGTGAC
CACCTCAAGTCAAAGACTCACACAAAGAGAAAGGCAGAATTTGAAGAGCAGAATGTGAGA
AAGAAGCAGAGGCCTCTAACTGCATCCCTTCAGTGCAACAGTACTGCGCAAACAGAGAAA
GTCAGTGTTATCCAGGACTTTGTGAAAATGTGCCTGGAAGCTAACATCCCACTTGAGAAG
GCTGATCACCCAGCAGTCCGTGCTTTCCTGTCTCGCCATGTGAAGAATGGAGGCTCCATA
CCCAAGTCAGACCAGCTGAGGAGAGCATATCTGCCTGATGGATACGAGAATGAGAATCAA
CTCCTTAACTCACAAGATTGTTGACAAGGAGGTTACCACCATTGTGATCAAGATAAATAA
TGTGGAGTATTAAAGTTATGTGTTGATTGTGTGGTTCATTTTTATATTTATTTCATTTTA
AATCATGTGATGCAGAATAGTTTTGCAATGTATATATATAGTTGCAGGCAAAAAAAAAAA
AACCACAAACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4140682|gb|AAD04161.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4140682|gb|AAD04161.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               616-735, + strand, RNAz p=0.625162

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               616-735, + strand, RNAz p=0.625162

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               58-259, gnl|bosTau2|chr1 (20183239-20183419)
               

               
               58-259, gnl|Hg17|chr3 (88190824-88190655)
               

               
               58-259, gnl|Mm7|chr16 (64798683-64798892)
               


               
               464-1150, gnl|bosTau2|chr1 (20186088-20186776)
               

               
               464-1150, gnl|Hg17|chr3 (88187840-88187158)
               

               
               464-1150, gnl|Mm7|chr16 (64802235-64802912)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-259, gnl|bosTau2|chr1 (20183239-20183419)
               

               
               58-259, gnl|Hg17|chr3 (88190824-88190655)
               

               
               58-259, gnl|Mm7|chr16 (64798683-64798892)
               


               
               464-1150, gnl|bosTau2|chr1 (20186088-20186776)
               

               
               464-1150, gnl|Hg17|chr3 (88187840-88187158)
               

               
               464-1150, gnl|Mm7|chr16 (64802235-64802912)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               amn (0.417711)
               

               
               tes (0.415628)
               

               
               pgl (0.35545)
               

               
               cbl (0.344392)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               pgl (0.35545)
               

               
               cbl (0.344392)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	58-259, gnl\|bosTau2\|chr1 (20183239-20183419)
	58-259, gnl\|Hg17\|chr3 (88190824-88190655)
	58-259, gnl\|Mm7\|chr16 (64798683-64798892)

	464-1150, gnl\|bosTau2\|chr1 (20186088-20186776)
	464-1150, gnl\|Hg17\|chr3 (88187840-88187158)
	464-1150, gnl\|Mm7\|chr16 (64802235-64802912)

	amn (0.417711)
	tes (0.415628)
	pgl (0.35545)
	cbl (0.344392)
	ese (0.253004)
	hea (0.204499)
	cmu (0.186393)
	sto (0.179824)
	rec (0.17307)
	cut (0.169924)
	nco (0.161734)
	liv (0.146284)
	csk (0.140746)
	ssp (0.13552)
	pla (0.133672)
	thg (0.126791)
	eru (0.120048)
	ecc (0.115035)
	ldo (0.0970026)