Non-Coding RNA Search

Ss1.1-LyN1-MLN01C010094.5.5

Sequence:


               
               ATTATTGACAAGATTTTCCAGGCTGGTTTCATCAATAATCAAGCATCCATAAAGTATTTT
ATAGAATGGATTATTATACTGATTCTTCATAAATTCCCTCAGTTTCTTCCAAAGTTCTGG
GACTGTTTTTCTTATGGCGAAGAAAACCTTAAAACAAGCATTTGTACCTTTTTATCAGTT
TTGTCACATTTGGACATCATTACTGAAAACATTCCAGAAAAGAAACTGATTCTGAAGCAA
GCCCTTATTATCGTACTGCACTGGTGTTTTAATCATAACTTCAGCATTCGACTGTACGCC
ATGGTTGCTCTTAAGAAAATCTGGAGCATGTGTAAATCATTGCACATTGAAGAACTTGAC
GCTCTGACTTCTGTTATTGAGTCCAGTCTTGACCAGGTGGAGAACATGCATGGAGCAGGG
AACGCCAAGAAGAATTGGCAGCGCATCCAAGAACATTTCTTCTTTGCAACATTTCACCCA
CTTAAGGATTACTGTCTCGAGACCATATTTTACGTCCTTCCGCGCCTCTCCGGCCTTGTC
GAAGATGAATGGATCGCCATTGATAAATTTACCAGGTTCACTGACATTCCTTTAGATACA
GGATTTCAGTGGTACCTTTCTCCAGCTCAGCTCTGTGAACTGACACCAAGTGACTGGTCT
CAGCAGGACATAGGTCCTCACTCAGGTGAAGCAGATAACCAGTCAGAGTGGGCTGATGTT
CAGAAGAAGATTATCCCATGGAAAAATAATGTTCCAGACTTAGACCTGGAGCTGGTGTTT
CAGGATCGTGCTGCTAGACTCGGAAAATCAATCAGTAGGCTGGTTGTAGTGGCCTCACTC
ATTGATAAGCCAACCAATTTAGGAGGGCTTTGCCGGACCTGCGAGGTGTTTGGCGCCTCG
GCCCTTGTCGTCAGCAGCCTTCAGTGCATCAGAGACAAGCAGTTTCAGCACCTCAGTGTT
TCAGCAGAGCAGTGGCTTCCTTTAGTGGAGGTCAAACCACCTCAGCTAATCGATTATCTG
CAAGAGAAAAAAGCAGAAGGTTACACCATAGTGGGTGTGGAACAAACTGCCAGAAGTGTA
GACCTAACCCAGTTCTGCTTTCCTGAGAAGTCCCTCCTCTTGTTGGGCAATGAACGTGAA
GGAATCCCGGCAAATCTGATTCAGCAGCTGGACGTGTGTGTGGAGATTCCTCAGCAGGGA
ATCATCCGCTCCCTCAACGTCCATGTGAGCGGAGCTCTGCTGATCTGGGAATACACCAGA
CAGCAGCTCCTGAGGCCCGGGGACGCTGGGTCCTGAAGCGCGTGCCTTCCCTGACATGAG
TTAGCGGTGCTATTCAAACACTGTTTTCAATCTATGAAGAAATAGATTCTAAAATCCACT
GGGCTAATTTGCATTTCCTCTTTCAATTTAATGCCAAAACTCTGTCATGTGCCTTAAATA
TTTTACTATATGTTGTCCCCTTTAATAAACATTTTTAGCTAAGTCGTATGGCTTCTTTAA
TAAAATATTTTAAGCAATTGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTATTGACAAGATTTTCCAGGCTGGTTTCATCAATAATCAAGCATCCATAAAGTATTTT
ATAGAATGGATTATTATACTGATTCTTCATAAATTCCCTCAGTTTCTTCCAAAGTTCTGG
GACTGTTTTTCTTATGGCGAAGAAAACCTTAAAACAAGCATTTGTACCTTTTTATCAGTT
TTGTCACATTTGGACATCATTACTGAAAACATTCCAGAAAAGAAACTGATTCTGAAGCAA
GCCCTTATTATCGTACTGCACTGGTGTTTTAATCATAACTTCAGCATTCGACTGTACGCC
ATGGTTGCTCTTAAGAAAATCTGGAGCATGTGTAAATCATTGCACATTGAAGAACTTGAC
GCTCTGACTTCTGTTATTGAGTCCAGTCTTGACCAGGTGGAGAACATGCATGGAGCAGGG
AACGCCAAGAAGAATTGGCAGCGCATCCAAGAACATTTCTTCTTTGCAACATTTCACCCA
CTTAAGGATTACTGTCTCGAGACCATATTTTACGTCCTTCCGCGCCTCTCCGGCCTTGTC
GAAGATGAATGGATCGCCATTGATAAATTTACCAGGTTCACTGACATTCCTTTAGATACA
GGATTTCAGTGGTACCTTTCTCCAGCTCAGCTCTGTGAACTGACACCAAGTGACTGGTCT
CAGCAGGACATAGGTCCTCACTCAGGTGAAGCAGATAACCAGTCAGAGTGGGCTGATGTT
CAGAAGAAGATTATCCCATGGAAAAATAATGTTCCAGACTTAGACCTGGAGCTGGTGTTT
CAGGATCGTGCTGCTAGACTCGGAAAATCAATCAGTAGGCTGGTTGTAGTGGCCTCACTC
ATTGATAAGCCAACCAATTTAGGAGGGCTTTGCCGGACCTGCGAGGTGTTTGGCGCCTCG
GCCCTTGTCGTCAGCAGCCTTCAGTGCATCAGAGACAAGCAGTTTCAGCACCTCAGTGTT
TCAGCAGAGCAGTGGCTTCCTTTAGTGGAGGTCAAACCACCTCAGCTAATCGATTATCTG
CAAGAGAAAAAAGCAGAAGGTTACACCATAGTGGGTGTGGAACAAACTGCCAGAAGTGTA
GACCTAACCCAGTTCTGCTTTCCTGAGAAGTCCCTCCTCTTGTTGGGCAATGAACGTGAA
GGAATCCCGGCAAATCTGATTCAGCAGCTGGACGTGTGTGTGGAGATTCCTCAGCAGGGA
ATCATCCGCTCCCTCAACGTCCATGTGAGCGGAGCTCTGCTGATCTGGGAATACACCAGA
CAGCAGCTCCTGAGGCCCGGGGACGCTGGGTCCTGAAGCGCGTGCCTTCCCTGACATGAG
TTAGCGGTGCTATTCAAACACTGTTTTCAATCTATGAAGAAATAGATTCTAAAATCCACT
GGGCTAATTTGCATTTCCTCTTTCAATTTAATGCCAAAACTCTGTCATGTGCCTTAAATA
TTTTACTATATGTTGTCCCCTTTAATAAACATTTTTAGCTAAGTCGTATGGCTTCTTTAA
TAAAATATTTTAAGCAATTGTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887683|ref|XP_594305.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887683|ref|XP_594305.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1156-1315, + strand, RNAz p=0.996876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1156-1315, + strand, RNAz p=0.996876

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of U38847, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of U38847, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-136, gnl|bosTau2|chr28 (3581722-3581857)
               

               
               1-136, gnl|Hg17|chr1 (230860699-230860564)
               

               
               1-136, gnl|Mm7|chr8 (125024441-125024306)
               


               
               221-425, gnl|bosTau2|chr28 (3586469-3586673)
               

               
               221-425, gnl|Hg17|chr1 (230848582-230848378)
               

               
               221-425, gnl|Mm7|chr8 (125021650-125021446)
               


               
               672-866, gnl|bosTau2|chr28 (3595122-3595316)
               

               
               672-866, gnl|Hg17|chr1 (230836320-230836126)
               

               
               672-866, gnl|Mm7|chr8 (125015872-125015678)
               


               
               1117-1513, gnl|bosTau2|chr28 (3596516-3596922)
               

               
               1117-1513, gnl|Hg17|chr1 (230834236-230833830)
               

               
               1117-1513, gnl|Mm7|chr8 (125014755-125014376)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-136, gnl|bosTau2|chr28 (3581722-3581857)
               

               
               1-136, gnl|Hg17|chr1 (230860699-230860564)
               

               
               1-136, gnl|Mm7|chr8 (125024441-125024306)
               


               
               221-425, gnl|bosTau2|chr28 (3586469-3586673)
               

               
               221-425, gnl|Hg17|chr1 (230848582-230848378)
               

               
               221-425, gnl|Mm7|chr8 (125021650-125021446)
               


               
               672-866, gnl|bosTau2|chr28 (3595122-3595316)
               

               
               672-866, gnl|Hg17|chr1 (230836320-230836126)
               

               
               672-866, gnl|Mm7|chr8 (125015872-125015678)
               


               
               1117-1513, gnl|bosTau2|chr28 (3596516-3596922)
               

               
               1117-1513, gnl|Hg17|chr1 (230834236-230833830)
               

               
               1117-1513, gnl|Mm7|chr8 (125014755-125014376)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)

	1-136, gnl\|bosTau2\|chr28 (3581722-3581857)
	1-136, gnl\|Hg17\|chr1 (230860699-230860564)
	1-136, gnl\|Mm7\|chr8 (125024441-125024306)

	221-425, gnl\|bosTau2\|chr28 (3586469-3586673)
	221-425, gnl\|Hg17\|chr1 (230848582-230848378)
	221-425, gnl\|Mm7\|chr8 (125021650-125021446)

	672-866, gnl\|bosTau2\|chr28 (3595122-3595316)
	672-866, gnl\|Hg17\|chr1 (230836320-230836126)
	672-866, gnl\|Mm7\|chr8 (125015872-125015678)

	1117-1513, gnl\|bosTau2\|chr28 (3596516-3596922)
	1117-1513, gnl\|Hg17\|chr1 (230834236-230833830)
	1117-1513, gnl\|Mm7\|chr8 (125014755-125014376)

	fbs (0.175346)
	duo (0.172801)
	cut (0.169924)
	fat (0.147427)
	ssp (0.13552)
	lyg (0.133103)
	nmm (0.132802)
	pgl (0.118483)