Ss1.1-LyN1-MLN01C020068.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTCTGAAGGGGGGATACGAGAACCACTGAGTGGGAGCTGTGTTGACTACCATTACTTCT TCGTTTGTCCTCAATTATGTCTGGGATGGTGGCTCTGCGGCTCCCCAGAGGCCTTTGGAC AGCGGCCTTGACGGTGATGCTGGTGGTGCTGGGTGCTCCAGTGGCTGAGGGCAGAGACTC TCCACAGGATTTCGTGTACCAGTTTAAGTTCGAGTGCTACTTCTTCAACGGAACGCAGCG GGTGCGGGGCGTGGCCAGGTGGGTCTACAACCAGGAGGAGCACGTGCGCTTCGACAGCGA CGTGGGGGAGTTCCGGGCGGTGACCCCGCTGGGGCGGCCGGACGCCGACTACTGGAACGG CCAGAAGGACGTCCTGGAGCAGAAGCGGGCCGAGGTGGACACGGTGTGCAAACACAACTA CCAGATAGAGGAAGGCACGACCCTGCAGCGGCGAGTGCAACCTACAGTGACTATCTCCCC ATCCAAGGCAGAGGCTCTAAACCACCACAACCTGCTGGTCTGTGCGGTGACAGATTTCTA TCCAAGCCAGGTGAAAGTCCAGTGGTTCCGGAATGGCCAGGAGGAGACAGCTGGCGTTGT GTCCACTCCTCTTATTAGGAACGGAGACTGGACCTACCAGGTGCTCGTGATGCTAGAGAT GAATCTCCAGCGAGGAGATGTCTACACCTGCCGCGTGGAGCACTCCAGCCTCCAGAGCCC CATCTTGGTGGAGTGGCGGGCACAGTCTGAATCTGCCCAGAGCAAGATGCTGAGCGGTGT CGGGGGCTTCGTGCTGGGGCTGATCTTCCTCGGGCTGGGCCTTTTCATCCGTCACAGGAG TCAGAAGGGGCTCGTGCGCTGAATCCTGAAGATACTTTGGGGTTGGTTTTTGCTCTTCTT AAATGCCTGTCTGTTCTTGCCTGGAATTCCCATACCCCTGCCAGCTTGTTCCTCTCTGAG GTCAGATCCTACAGTGACTCTGATGCAGTCACGAGGGCGCTTCCTGTGATCCCCACCTCA AGGCTCTGGCTGTGAAGCTTCTTCCTGAACTGACCCCAGCGCCTCTGCCTGAGTGCAGCC AGCTGTGTCTACTCAGACCACAAGGGATTTTCCTGTTCCTATTTTCCCTCAACAGACTGT GCAAGAGAAGCACATTGAAACCATTTACCTGGCTGTAGAGTGCTTTTTTTAAAATCATAA TTAAACATGATTATGAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTCTGAAGGGGGGATACGAGAACCACTGAGTGGGAGCTGTGTTGACTACCATTACTTCT TCGTTTGTCCTCAATTATGTCTGGGATGGTGGCTCTGCGGCTCCCCAGAGGCCTTTGGAC AGCGGCCTTGACGGTGATGCTGGTGGTGCTGGGTGCTCCAGTGGCTGAGGGCAGAGACTC TCCACAGGATTTCGTGTACCAGTTTAAGTTCGAGTGCTACTTCTTCAACGGAACGCAGCG GGTGCGGGGCGTGGCCAGGTGGGTCTACAACCAGGAGGAGCACGTGCGCTTCGACAGCGA CGTGGGGGAGTTCCGGGCGGTGACCCCGCTGGGGCGGCCGGACGCCGACTACTGGAACGG CCAGAAGGACGTCCTGGAGCAGAAGCGGGCCGAGGTGGACACGGTGTGCAAACACAACTA CCAGATAGAGGAAGGCACGACCCTGCAGCGGCGAGTGCAACCTACAGTGACTATCTCCCC ATCCAAGGCAGAGGCTCTAAACCACCACAACCTGCTGGTCTGTGCGGTGACAGATTTCTA TCCAAGCCAGGTGAAAGTCCAGTGGTTCCGGAATGGCCAGGAGGAGACAGCTGGCGTTGT GTCCACTCCTCTTATTAGGAACGGAGACTGGACCTACCAGGTGCTCGTGATGCTAGAGAT GAATCTCCAGCGAGGAGATGTCTACACCTGCCGCGTGGAGCACTCCAGCCTCCAGAGCCC CATCTTGGTGGAGTGGCGGGCACAGTCTGAATCTGCCCAGAGCAAGATGCTGAGCGGTGT CGGGGGCTTCGTGCTGGGGCTGATCTTCCTCGGGCTGGGCCTTTTCATCCGTCACAGGAG TCAGAAGGGGCTCGTGCGCTGAATCCTGAAGATACTTTGGGGTTGGTTTTTGCTCTTCTT AAATGCCTGTCTGTTCTTGCCTGGAATTCCCATACCCCTGCCAGCTTGTTCCTCTCTGAG GTCAGATCCTACAGTGACTCTGATGCAGTCACGAGGGCGCTTCCTGTGATCCCCACCTCA AGGCTCTGGCTGTGAAGCTTCTTCCTGAACTGACCCCAGCGCCTCTGCCTGAGTGCAGCC AGCTGTGTCTACTCAGACCACAAGGGATTTTCCTGTTCCTATTTTCCCTCAACAGACTGT GCAAGAGAAGCACATTGAAACCATTTACCTGGCTGTAGAGTGCTTTTTTTAAAATCATAA TTAAACATGATTATGAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 613-738, - strand, RNAz p=0.852545 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 613-738, - strand, RNAz p=0.852545 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 179-424, gnl|bosTau2|chr23 (22932416-22932663) | |
| 179-424, gnl|Hg17|chr6 (32633950-32633703) | |
| 179-424, gnl|Mm7|chr17 (32386907-32387154) | |
| 454-738, gnl|bosTau2|chr23 (5446517-5446233) | |
| 454-738, gnl|canFam2|chr12 (5382994-5383292) | |
| 454-738, gnl|dasNov1|scaffold_148284 (292-4) | |
| 454-738, gnl|echTel1|scaffold_68652 (768-472) | |
| 454-738, gnl|hg17|chr6 (32807162-32807454) | |
| 454-738, gnl|Hg17|chr6 (32807452-32807174) | |
| 454-738, gnl|loxAfr1|scaffold_115569 (4276-3994) | |
| 454-738, gnl|mm7|chr17 (32391791-32391493) | |
| 454-738, gnl|Mm7|chr17 (32345159-32345443) | |
| 454-738, gnl|monDom2|scaffold_42 (462853-463154) | |
| 454-738, gnl|oryCun1|scaffold_178605 (31791-32089) | |
| 454-738, gnl|panTro1|chr5 (33249958-33250250) | |
| 454-738, gnl|rheMac2|chr4 (32393778-32394077) | |
| 454-738, gnl|rn3|chr20 (4733016-4733314) | |
| 740-849, gnl|bosTau2|chr23 (22936840-22936949) | |
| 740-849, gnl|canFam2|chr12 (5156651-5156856) | |
| 740-849, gnl|dasNov1|scaffold_23750 (1231-1426) | |
| 740-849, gnl|echTel1|scaffold_221313 (7858-8048) | |
| 740-849, gnl|hg17|chr6 (32629607-32629799) | |
| 740-849, gnl|Hg17|chr6 (32629719-32629610) | |
| 740-849, gnl|loxAfr1|scaffold_61179 (3411-3219) | |
| 740-849, gnl|mm7|chr17 (32413102-32412911) | |
| 740-849, gnl|Mm7|chr17 (32392370-32392479) | |
| 740-849, gnl|monDom2|scaffold_42 (462297-462489) | |
| 740-849, gnl|oryCun1|scaffold_173411 (42093-41902) | |
| 740-849, gnl|panTro1|chr5 (33030973-33031165) | |
| 740-849, gnl|rheMac2|chr4 (32277429-32277622) | |
| 740-849, gnl|rn3|chr20 (4672856-4673049) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-424, gnl|bosTau2|chr23 (22932416-22932663) | |
| 179-424, gnl|Hg17|chr6 (32633950-32633703) | |
| 179-424, gnl|Mm7|chr17 (32386907-32387154) | |
| 454-738, gnl|bosTau2|chr23 (5446517-5446233) | |
| 454-738, gnl|canFam2|chr12 (5382994-5383292) | |
| 454-738, gnl|dasNov1|scaffold_148284 (292-4) | |
| 454-738, gnl|echTel1|scaffold_68652 (768-472) | |
| 454-738, gnl|hg17|chr6 (32807162-32807454) | |
| 454-738, gnl|Hg17|chr6 (32807452-32807174) | |
| 454-738, gnl|loxAfr1|scaffold_115569 (4276-3994) | |
| 454-738, gnl|mm7|chr17 (32391791-32391493) | |
| 454-738, gnl|Mm7|chr17 (32345159-32345443) | |
| 454-738, gnl|monDom2|scaffold_42 (462853-463154) | |
| 454-738, gnl|oryCun1|scaffold_178605 (31791-32089) | |
| 454-738, gnl|panTro1|chr5 (33249958-33250250) | |
| 454-738, gnl|rheMac2|chr4 (32393778-32394077) | |
| 454-738, gnl|rn3|chr20 (4733016-4733314) | |
| 740-849, gnl|bosTau2|chr23 (22936840-22936949) | |
| 740-849, gnl|canFam2|chr12 (5156651-5156856) | |
| 740-849, gnl|dasNov1|scaffold_23750 (1231-1426) | |
| 740-849, gnl|echTel1|scaffold_221313 (7858-8048) | |
| 740-849, gnl|hg17|chr6 (32629607-32629799) | |
| 740-849, gnl|Hg17|chr6 (32629719-32629610) | |
| 740-849, gnl|loxAfr1|scaffold_61179 (3411-3219) | |
| 740-849, gnl|mm7|chr17 (32413102-32412911) | |
| 740-849, gnl|Mm7|chr17 (32392370-32392479) | |
| 740-849, gnl|monDom2|scaffold_42 (462297-462489) | |
| 740-849, gnl|oryCun1|scaffold_173411 (42093-41902) | |
| 740-849, gnl|panTro1|chr5 (33030973-33031165) | |
| 740-849, gnl|rheMac2|chr4 (32277429-32277622) | |
| 740-849, gnl|rn3|chr20 (4672856-4673049) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| clu (3.82867) | |
| cty (2.49792) | |
| csp (1.93424) | |
| duo (1.38241) | |
| cly (1.20642) | |
| lnt (1.13847) | |
| cag (1.05836) | |
| jej (0.890296) | |
| fty (0.703359) | |
| sin (0.69979) | |
| ill (0.526778) | |
| sto (0.359648) | |
| ton (0.351) | |
| mcp (0.341297) | |
| spl (0.286369) | |
| pty (0.285429) | |
| che (0.272628) | |
| med (0.232504) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cje (0.165235) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ova (0.129132) | |
| ese (0.126502) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (3.82867) | |
| cty (2.49792) | |
| csp (1.93424) | |
| duo (1.38241) | |
| cly (1.20642) | |
| lnt (1.13847) | |
| cag (1.05836) | |
| jej (0.890296) | |
| fty (0.703359) | |
| sin (0.69979) | |
| ill (0.526778) | |
| sto (0.359648) | |
| ton (0.351) | |
| mcp (0.341297) | |
| spl (0.286369) | |
| pty (0.285429) | |
| che (0.272628) | |
| med (0.232504) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cje (0.165235) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ova (0.129132) | |
| ese (0.126502) |