Ss1.1-LyN1-MLN01C020103.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAGGTGTAAAGAAGACATTCCAGTGTGAGCTTTGCAGTTACACGTGTCCACGGCGTT CAAATTTGGATCGGCACATGAAAAGTCACACTGATGAGAGACCACACAAGTGCCATCTCT GTGGCAGGGCATTCAGAACAGTCACCCTTCTGAGGAATCACCTAAACACACACACAGGTA CTCGTCCTCACAAGTGCCCAGACTGCGACATGGCCTTTGTTACTAGTGGAGAATTGGTGC GGCATCGTCGTTACAAACACACCCATGAGAAGCCATTTAAGTGTTCCATGTGCGATTATG CCAGTGTAGAAGTTAGCAAATTAAAACGTCATATTCGCTCTCACACTGGAGAGCGTCCTT TCCAGTGCAGCTTGTGCAGTTATGCCAGCAGGGACACATATAAGCTGAAAAGGCACATGA GAACTCATTCAGGGGAAAAACCTTACGAATGTTATATTTGTCATGCACGATTTACCCAAA GTGGTACCATGAAGATGCACATTTTACAGAAGCACACGGAAAATGTGGCCAAATTTCACT GTCCCCACTGTGACACTGTCATAGCCCGAAAAAGTGATTTGGGTGTCCACTTGCGAAAGC AGCATTCCTACATTGAGCAGGGCAAGAAATGCCGATACTGCGATGCTGTGTTTCATGAAC GCTATGCCCTCATCCAGCACCAGAAGTCACACAAGAATGAGAAACGCTTTAAGTGTGATC AGTGTGATTATGCCTGCAGACAGGAGAGGCACATGATCATGCACAAGCGCACCCACACAG GGGAGAAGCCTTATGCCTGCAGCCACTGCGACAAGACCTTCCGCCAGAAACAGCTCCTCG ACATGCACTTCAAACGCTACCACGATCCCAACTTTGTCCCTGCGGCCTTCGTCTGTTCTA AATGTGGGAAAACATTTACACGCCGGAATACCATGGCAAGACATGCTGATAATTGTGCTG GTCCAGATGGTGTAGAAGGGGAAAATGGAGGAGAAACAAAGAAGAGTAAACGTGGAAGAA AAAGAAAGATGCGCTCTAAAAAGGAAGACTCCTCTGACAGTGAAAATGCTGAGCCAGACC TGGATGACAATGAGGATGAGGAGGAGCCTGCAGTGGAAATTGAACCAGAGCCAGAGCCTC AGCCTGTGACCCCAGCCCCACCACCCGCTAAAAAGCGGAGAGGACGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAGGTGTAAAGAAGACATTCCAGTGTGAGCTTTGCAGTTACACGTGTCCACGGCGTT CAAATTTGGATCGGCACATGAAAAGTCACACTGATGAGAGACCACACAAGTGCCATCTCT GTGGCAGGGCATTCAGAACAGTCACCCTTCTGAGGAATCACCTAAACACACACACAGGTA CTCGTCCTCACAAGTGCCCAGACTGCGACATGGCCTTTGTTACTAGTGGAGAATTGGTGC GGCATCGTCGTTACAAACACACCCATGAGAAGCCATTTAAGTGTTCCATGTGCGATTATG CCAGTGTAGAAGTTAGCAAATTAAAACGTCATATTCGCTCTCACACTGGAGAGCGTCCTT TCCAGTGCAGCTTGTGCAGTTATGCCAGCAGGGACACATATAAGCTGAAAAGGCACATGA GAACTCATTCAGGGGAAAAACCTTACGAATGTTATATTTGTCATGCACGATTTACCCAAA GTGGTACCATGAAGATGCACATTTTACAGAAGCACACGGAAAATGTGGCCAAATTTCACT GTCCCCACTGTGACACTGTCATAGCCCGAAAAAGTGATTTGGGTGTCCACTTGCGAAAGC AGCATTCCTACATTGAGCAGGGCAAGAAATGCCGATACTGCGATGCTGTGTTTCATGAAC GCTATGCCCTCATCCAGCACCAGAAGTCACACAAGAATGAGAAACGCTTTAAGTGTGATC AGTGTGATTATGCCTGCAGACAGGAGAGGCACATGATCATGCACAAGCGCACCCACACAG GGGAGAAGCCTTATGCCTGCAGCCACTGCGACAAGACCTTCCGCCAGAAACAGCTCCTCG ACATGCACTTCAAACGCTACCACGATCCCAACTTTGTCCCTGCGGCCTTCGTCTGTTCTA AATGTGGGAAAACATTTACACGCCGGAATACCATGGCAAGACATGCTGATAATTGTGCTG GTCCAGATGGTGTAGAAGGGGAAAATGGAGGAGAAACAAAGAAGAGTAAACGTGGAAGAA AAAGAAAGATGCGCTCTAAAAAGGAAGACTCCTCTGACAGTGAAAATGCTGAGCCAGACC TGGATGACAATGAGGATGAGGAGGAGCCTGCAGTGGAAATTGAACCAGAGCCAGAGCCTC AGCCTGTGACCCCAGCCCCACCACCCGCTAAAAAGCGGAGAGGACGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 5-180, gnl|bosTau2|chr18 (15193392-15193217) | |
| 5-180, gnl|canFam2|chr5 (84840913-84840726) | |
| 5-180, gnl|danRer3|chr18 (21682895-21683079) | |
| 5-180, gnl|dasNov1|scaffold_103073 (4984-4797) | |
| 5-180, gnl|echTel1|scaffold_182243 (9864-9677) | |
| 5-180, gnl|fr1|chrUn (264678177-264677995) | |
| 5-180, gnl|galGal2|chr11 (1101796-1101983) | |
| 5-180, gnl|hg17|chr16 (66203344-66203531) | |
| 5-180, gnl|Hg17|chr16 (66203353-66203524) | |
| 5-180, gnl|loxAfr1|scaffold_25972 (7690-7875) | |
| 5-180, gnl|mm7|chr8 (104263484-104263671) | |
| 5-180, gnl|Mm7|chr8 (104263493-104263664) | |
| 5-180, gnl|monDom2|scaffold_23 (18841897-18841706) | |
| 5-180, gnl|oryCun1|scaffold_172762 (62304-62491) | |
| 5-180, gnl|panTro1|chr18 (60500026-60500213) | |
| 5-180, gnl|rheMac2|chr20 (65918370-65918557) | |
| 5-180, gnl|rn3|chr19 (35500800-35500987) | |
| 5-180, gnl|tetNig1|chr5 (5238117-5238302) | |
| 5-180, gnl|xenTro1|scaffold_145 (1265675-1265862) | |
| 431-584, gnl|bosTau2|chr18 (15187265-15187112) | |
| 431-584, gnl|canFam2|chr5 (84832528-84832351) | |
| 431-584, gnl|danRer3|chr18 (21683654-21683826) | |
| 431-584, gnl|dasNov1|scaffold_7041 (43827-43996) | |
| 431-584, gnl|echTel1|scaffold_182243 (2538-2362) | |
| 431-584, gnl|fr1|chrUn (264677389-264677221) | |
| 431-584, gnl|galGal2|chr11 (1104956-1105135) | |
| 431-584, gnl|hg17|chr16 (66212828-66213005) | |
| 431-584, gnl|Hg17|chr16 (66212844-66212997) | |
| 431-584, gnl|loxAfr1|scaffold_7179 (50684-50861) | |
| 431-584, gnl|mm7|chr8 (104269912-104270089) | |
| 431-584, gnl|Mm7|chr8 (104269928-104270081) | |
| 431-584, gnl|monDom2|scaffold_23 (18833663-18833489) | |
| 431-584, gnl|oryCun1|scaffold_197634 (4171-3994) | |
| 431-584, gnl|panTro1|chr18 (60509509-60509686) | |
| 431-584, gnl|rheMac2|chr20 (65929628-65929805) | |
| 431-584, gnl|rn3|chr19 (35508477-35508654) | |
| 431-584, gnl|tetNig1|chr5 (5238881-5239055) | |
| 431-584, gnl|xenTro1|scaffold_145 (1267341-1267511) | |
| 741-926, gnl|bosTau2|chr18 (15181103-15180918) | |
| 741-926, gnl|canFam2|chr5 (84825457-84825242) | |
| 741-926, gnl|danRer3|chr18 (21684213-21684401) | |
| 741-926, gnl|dasNov1|scaffold_26645 (7610-7395) | |
| 741-926, gnl|echTel1|scaffold_182243 (760-560) | |
| 741-926, gnl|fr1|chrUn (264676876-264676669) | |
| 741-926, gnl|galGal2|chr11 (1107281-1107474) | |
| 741-926, gnl|hg17|chr16 (66219753-66219964) | |
| 741-926, gnl|Hg17|chr16 (66219771-66219956) | |
| 741-926, gnl|loxAfr1|scaffold_7179 (52195-52408) | |
| 741-926, gnl|mm7|chr8 (104274610-104274825) | |
| 741-926, gnl|Mm7|chr8 (104274632-104274817) | |
| 741-926, gnl|monDom2|scaffold_23 (18830479-18830270) | |
| 741-926, gnl|oryCun1|scaffold_197634 (197-4) | |
| 741-926, gnl|panTro1|chr18_random (35671288-35671077) | |
| 741-926, gnl|rheMac2|chr20 (65938977-65939188) | |
| 741-926, gnl|rn3|chr19 (35513077-35513292) | |
| 741-926, gnl|tetNig1|chr5 (5239379-5239586) | |
| 741-926, gnl|xenTro1|scaffold_145 (1270189-1270382) | |
| 1062-1188, gnl|bosTau2|chr18 (15177038-15176912) | |
| 1062-1188, gnl|canFam2|chr5 (84819218-84819018) | |
| 1062-1188, gnl|dasNov1|scaffold_26645 (3272-3069) | |
| 1062-1188, gnl|echTel1|scaffold_274124 (420-622) | |
| 1062-1188, gnl|galGal2|chr11 (1110532-1110724) | |
| 1062-1188, gnl|hg17|chr16 (66228071-66228271) | |
| 1062-1188, gnl|Hg17|chr16 (66228093-66228219) | |
| 1062-1188, gnl|loxAfr1|scaffold_7179 (58893-59093) | |
| 1062-1188, gnl|mm7|chr8 (104278785-104279007) | |
| 1062-1188, gnl|Mm7|chr8 (104278805-104278955) | |
| 1062-1188, gnl|monDom2|scaffold_23 (18828320-18828122) | |
| 1062-1188, gnl|panTro1|chr18 (60524774-60524974) | |
| 1062-1188, gnl|rheMac2|chr20 (65946733-65946933) | |
| 1062-1188, gnl|xenTro1|scaffold_145 (1272511-1272710) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-180, gnl|bosTau2|chr18 (15193392-15193217) | |
| 5-180, gnl|canFam2|chr5 (84840913-84840726) | |
| 5-180, gnl|danRer3|chr18 (21682895-21683079) | |
| 5-180, gnl|dasNov1|scaffold_103073 (4984-4797) | |
| 5-180, gnl|echTel1|scaffold_182243 (9864-9677) | |
| 5-180, gnl|fr1|chrUn (264678177-264677995) | |
| 5-180, gnl|galGal2|chr11 (1101796-1101983) | |
| 5-180, gnl|hg17|chr16 (66203344-66203531) | |
| 5-180, gnl|Hg17|chr16 (66203353-66203524) | |
| 5-180, gnl|loxAfr1|scaffold_25972 (7690-7875) | |
| 5-180, gnl|mm7|chr8 (104263484-104263671) | |
| 5-180, gnl|Mm7|chr8 (104263493-104263664) | |
| 5-180, gnl|monDom2|scaffold_23 (18841897-18841706) | |
| 5-180, gnl|oryCun1|scaffold_172762 (62304-62491) | |
| 5-180, gnl|panTro1|chr18 (60500026-60500213) | |
| 5-180, gnl|rheMac2|chr20 (65918370-65918557) | |
| 5-180, gnl|rn3|chr19 (35500800-35500987) | |
| 5-180, gnl|tetNig1|chr5 (5238117-5238302) | |
| 5-180, gnl|xenTro1|scaffold_145 (1265675-1265862) | |
| 431-584, gnl|bosTau2|chr18 (15187265-15187112) | |
| 431-584, gnl|canFam2|chr5 (84832528-84832351) | |
| 431-584, gnl|danRer3|chr18 (21683654-21683826) | |
| 431-584, gnl|dasNov1|scaffold_7041 (43827-43996) | |
| 431-584, gnl|echTel1|scaffold_182243 (2538-2362) | |
| 431-584, gnl|fr1|chrUn (264677389-264677221) | |
| 431-584, gnl|galGal2|chr11 (1104956-1105135) | |
| 431-584, gnl|hg17|chr16 (66212828-66213005) | |
| 431-584, gnl|Hg17|chr16 (66212844-66212997) | |
| 431-584, gnl|loxAfr1|scaffold_7179 (50684-50861) | |
| 431-584, gnl|mm7|chr8 (104269912-104270089) | |
| 431-584, gnl|Mm7|chr8 (104269928-104270081) | |
| 431-584, gnl|monDom2|scaffold_23 (18833663-18833489) | |
| 431-584, gnl|oryCun1|scaffold_197634 (4171-3994) | |
| 431-584, gnl|panTro1|chr18 (60509509-60509686) | |
| 431-584, gnl|rheMac2|chr20 (65929628-65929805) | |
| 431-584, gnl|rn3|chr19 (35508477-35508654) | |
| 431-584, gnl|tetNig1|chr5 (5238881-5239055) | |
| 431-584, gnl|xenTro1|scaffold_145 (1267341-1267511) | |
| 741-926, gnl|bosTau2|chr18 (15181103-15180918) | |
| 741-926, gnl|canFam2|chr5 (84825457-84825242) | |
| 741-926, gnl|danRer3|chr18 (21684213-21684401) | |
| 741-926, gnl|dasNov1|scaffold_26645 (7610-7395) | |
| 741-926, gnl|echTel1|scaffold_182243 (760-560) | |
| 741-926, gnl|fr1|chrUn (264676876-264676669) | |
| 741-926, gnl|galGal2|chr11 (1107281-1107474) | |
| 741-926, gnl|hg17|chr16 (66219753-66219964) | |
| 741-926, gnl|Hg17|chr16 (66219771-66219956) | |
| 741-926, gnl|loxAfr1|scaffold_7179 (52195-52408) | |
| 741-926, gnl|mm7|chr8 (104274610-104274825) | |
| 741-926, gnl|Mm7|chr8 (104274632-104274817) | |
| 741-926, gnl|monDom2|scaffold_23 (18830479-18830270) | |
| 741-926, gnl|oryCun1|scaffold_197634 (197-4) | |
| 741-926, gnl|panTro1|chr18_random (35671288-35671077) | |
| 741-926, gnl|rheMac2|chr20 (65938977-65939188) | |
| 741-926, gnl|rn3|chr19 (35513077-35513292) | |
| 741-926, gnl|tetNig1|chr5 (5239379-5239586) | |
| 741-926, gnl|xenTro1|scaffold_145 (1270189-1270382) | |
| 1062-1188, gnl|bosTau2|chr18 (15177038-15176912) | |
| 1062-1188, gnl|canFam2|chr5 (84819218-84819018) | |
| 1062-1188, gnl|dasNov1|scaffold_26645 (3272-3069) | |
| 1062-1188, gnl|echTel1|scaffold_274124 (420-622) | |
| 1062-1188, gnl|galGal2|chr11 (1110532-1110724) | |
| 1062-1188, gnl|hg17|chr16 (66228071-66228271) | |
| 1062-1188, gnl|Hg17|chr16 (66228093-66228219) | |
| 1062-1188, gnl|loxAfr1|scaffold_7179 (58893-59093) | |
| 1062-1188, gnl|mm7|chr8 (104278785-104279007) | |
| 1062-1188, gnl|Mm7|chr8 (104278805-104278955) | |
| 1062-1188, gnl|monDom2|scaffold_23 (18828320-18828122) | |
| 1062-1188, gnl|panTro1|chr18 (60524774-60524974) | |
| 1062-1188, gnl|rheMac2|chr20 (65946733-65946933) | |
| 1062-1188, gnl|xenTro1|scaffold_145 (1272511-1272710) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.286369) |