Non-Coding RNA Search

Ss1.1-LyN1-MLN01C030011.5

Sequence:


               
               CATGTTGCTTCCGAACATCCTGCTCACCGGTACACCAGGGGTTGGAAAAACCACACTCGG
CAAAGAACTTGCATCAAGATCAGGATTGAAATACATTAATGTGGGTGATTTAGCTCGAGA
AGTCTGATCACCGGATATCATGGAGTCTGGCAAGATGGCTTCTCCCAAGAGCATGCCGAA
AGATGCACAGATGATGGCACAAATCCTGAAGGATATGGGGATTACAGAATATGAGCCAAG
AGTTATAAATCAGATGCTGGAGTTTGCCTTCCGATATGTGACCACAATTCTAGATGATGC
AAAAATTTATTCAAGTCATGCTAAGAAAGCGACTGTTGATGCAGATGATGTGAGATTGGC
AATCCAGTGTCGTGCTGACCAATCATTTACCTCTCCTCCCCCAAGAGATTTTTTATTAGA
TATTGCAAGGCAAAGAAATCAAACCCCTTTGCCATTGATCAAGCCATATTCAGGCCCTCG
ATTGCCACCTGATAGATACTGTTTGACTGCTCCAAATTACAGACTTAAGTCTTTACAAAA
AAAGGCATCTACTTCTGCGGGAAGAATAACAGTTCCGCGGTTAAGTGTGGGTTCAGTTAC
TAGCAGACCAAGTACTCCCACACTTGGCACACCAACCCAACAAACCATGTCTGTTCCAGC
TAAAGTAGGGACACCAGTGTCCCTCACAGGGCAAAGGTTCACAGTACAGATGCCCACTTC
ACAGTCCCCAGCTGTAAAAGCATCAATTCCTGCAACATCAGCAGTTCAGAATGTTCTAAT
TAATCCATCATTAATTGGGTCCAAAAACATTCTTATTACCACTAACATGGTGTCATCACA
AAATACTGCCAGTGAATCATCAAACGCATTGAAAAGAAAACGTGAAGATGATGACGATGA
CGAGGATGATGACGACGACGACTATGATAATTTGTAATCTAGCCTCGATGCATGTAGCAT
GTATACTTGGTTTTGAATCCATTGTACTGGGATTAAACATGCATGCTGGATGTTTCTAAG
TTATGTTTTAGAAAAATAGTATTTAATGAGTAAAGGTGGTTACCATATTTTTTAATTGCT
ATATGTTGGACGTTAATAGGATTAGTAATGGTTTTTATCAGCCTTTAAGTGTAAAAAATA
AAGTTGTAATTCATCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTTGCTTCCGAACATCCTGCTCACCGGTACACCAGGGGTTGGAAAAACCACACTCGG
CAAAGAACTTGCATCAAGATCAGGATTGAAATACATTAATGTGGGTGATTTAGCTCGAGA
AGTCTGATCACCGGATATCATGGAGTCTGGCAAGATGGCTTCTCCCAAGAGCATGCCGAA
AGATGCACAGATGATGGCACAAATCCTGAAGGATATGGGGATTACAGAATATGAGCCAAG
AGTTATAAATCAGATGCTGGAGTTTGCCTTCCGATATGTGACCACAATTCTAGATGATGC
AAAAATTTATTCAAGTCATGCTAAGAAAGCGACTGTTGATGCAGATGATGTGAGATTGGC
AATCCAGTGTCGTGCTGACCAATCATTTACCTCTCCTCCCCCAAGAGATTTTTTATTAGA
TATTGCAAGGCAAAGAAATCAAACCCCTTTGCCATTGATCAAGCCATATTCAGGCCCTCG
ATTGCCACCTGATAGATACTGTTTGACTGCTCCAAATTACAGACTTAAGTCTTTACAAAA
AAAGGCATCTACTTCTGCGGGAAGAATAACAGTTCCGCGGTTAAGTGTGGGTTCAGTTAC
TAGCAGACCAAGTACTCCCACACTTGGCACACCAACCCAACAAACCATGTCTGTTCCAGC
TAAAGTAGGGACACCAGTGTCCCTCACAGGGCAAAGGTTCACAGTACAGATGCCCACTTC
ACAGTCCCCAGCTGTAAAAGCATCAATTCCTGCAACATCAGCAGTTCAGAATGTTCTAAT
TAATCCATCATTAATTGGGTCCAAAAACATTCTTATTACCACTAACATGGTGTCATCACA
AAATACTGCCAGTGAATCATCAAACGCATTGAAAAGAAAACGTGAAGATGATGACGATGA
CGAGGATGATGACGACGACGACTATGATAATTTGTAATCTAGCCTCGATGCATGTAGCAT
GTATACTTGGTTTTGAATCCATTGTACTGGGATTAAACATGCATGCTGGATGTTTCTAAG
TTATGTTTTAGAAAAATAGTATTTAATGAGTAAAGGTGGTTACCATATTTTTTAATTGCT
ATATGTTGGACGTTAATAGGATTAGTAATGGTTTTTATCAGCCTTTAAGTGTAAAAAATA
AAGTTGTAATTCATCAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5U0D1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5U0D1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               145-264, - strand, RNAz p=0.726086
               

               
               625-864, - strand, RNAz p=0.872797

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-264, - strand, RNAz p=0.726086
               

               
               625-864, - strand, RNAz p=0.872797

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-1164, gnl|bosTau2|chr15 (48311957-48310793)
               

               
               1-1164, gnl|Hg17|chr5 (68701074-68696324)
               

               
               1-1164, gnl|Mm7|chr6 (115664911-115663747)
               


               
               736-1151, gnl|bosTau2|chr12 (31510887-31511303)
               

               
               736-1151, gnl|Mm7|chr4 (37277735-37277366)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1164, gnl|bosTau2|chr15 (48311957-48310793)
               

               
               1-1164, gnl|Hg17|chr5 (68701074-68696324)
               

               
               1-1164, gnl|Mm7|chr6 (115664911-115663747)
               


               
               736-1151, gnl|bosTau2|chr12 (31510887-31511303)
               

               
               736-1151, gnl|Mm7|chr4 (37277735-37277366)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               fco (1.41487)
               

               
               cbe (0.956938)
               

               
               lyg (0.399308)
               

               
               pgl (0.35545)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.41487)
               

               
               cbe (0.956938)
               

               
               lyg (0.399308)
               

               
               pgl (0.35545)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)

	145-264, - strand, RNAz p=0.726086
	625-864, - strand, RNAz p=0.872797

	1-1164, gnl\|bosTau2\|chr15 (48311957-48310793)
	1-1164, gnl\|Hg17\|chr5 (68701074-68696324)
	1-1164, gnl\|Mm7\|chr6 (115664911-115663747)

	736-1151, gnl\|bosTau2\|chr12 (31510887-31511303)
	736-1151, gnl\|Mm7\|chr4 (37277735-37277366)

	fco (1.41487)
	cbe (0.956938)
	lyg (0.399308)
	pgl (0.35545)
	bfe (0.299715)
	fat (0.294855)
	cte (0.29274)
	lin (0.291206)
	spl (0.286369)
	csk (0.281492)
	ste (0.270416)
	kid (0.259471)
	ova (0.258264)
	cbl (0.229595)
	spc (0.226732)
	tes (0.207814)
	hea (0.204499)
	fli (0.202881)
	fcc (0.197785)
	ldo (0.194005)
	cmu (0.186393)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	tbr (0.154178)
	lun (0.150489)
	pla (0.133672)
	sug (0.127291)
	thg (0.126791)
	eep (0.122564)