Ss1.1-LyN1-MLN01C030050.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGTGGGGCTAGGCTAGCTGCTAGCACAGGCTGGCTGGCGGCTGGGGACTGTTCAGTG CTTCTACTGGGGAAGAACAGAGCGTAAGATGGAGCAGGGAAAGCATCTGGCTGGCCTCAT CCTGGCTATTACTCTTCTTCAAGGTACCATGGCCCAGTTGAAAGAAGGAAAACATTCAGT GCTCTTGGATGACAACCGAGAAGATGGTTCAGTACTTCTGACTTGTGGTTTGCCTGACCA AAATATCAGATGGTTTAAAGATGGGAAGGAAATATGTTCTCTAAATAACAGTAGAAGTAC TTGTAATCTGGGAAGTAGTTCCAAGGACCCTCGAGGGATCTATTGGTGTGAAGGATCAAA GGAGAATTCAAAACGACTCCAAGTATATTATAGAATGTGTCAGAACTGCATTGAGCTGAA TTCAGCCACTGTGTCTGGTTTTATCTTCACTGAAATCATCAGCCTTTTTTTCCTTGCTGT TGGGGTCTACTTCATTGCCGGACAGGATGGAGTTCGCCAGTCAAGAGCTTCAGACAAGCA GACACTGTTATCCAATGACCAACTTTATCAGCCCCTTAAGGATCGGGAAGATGACCAATA TAGCCACCTTCAAGGAAACAATTCAAGGAAGAATTGAGCCCAAGACTCAGAGTAGAGTTG CCTTTTTTGGACAAATGGAGTCATGCAATACGCCGCTGCAGACATTCTCATTCAAGTCTT TGAGTGGACATATGTTTTCATTTACCTGGGTTGATATCTAGGAGTGAAGAATTGCTGAAT TGTATGGTAAATTTATGCATAATATTTTAAGAAACTGCCAGAGTGTTTTCCAAACTGTTC TTTTTACATTTCCACGAGTGATAGATGAATGAGGGTTCTTGCTGCACTGCATCCTCACAA ATATTTGTTATCTTTTTTAGTATAGTCATTAAAGTGGATATAAAATAGTAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGTGGGGCTAGGCTAGCTGCTAGCACAGGCTGGCTGGCGGCTGGGGACTGTTCAGTG CTTCTACTGGGGAAGAACAGAGCGTAAGATGGAGCAGGGAAAGCATCTGGCTGGCCTCAT CCTGGCTATTACTCTTCTTCAAGGTACCATGGCCCAGTTGAAAGAAGGAAAACATTCAGT GCTCTTGGATGACAACCGAGAAGATGGTTCAGTACTTCTGACTTGTGGTTTGCCTGACCA AAATATCAGATGGTTTAAAGATGGGAAGGAAATATGTTCTCTAAATAACAGTAGAAGTAC TTGTAATCTGGGAAGTAGTTCCAAGGACCCTCGAGGGATCTATTGGTGTGAAGGATCAAA GGAGAATTCAAAACGACTCCAAGTATATTATAGAATGTGTCAGAACTGCATTGAGCTGAA TTCAGCCACTGTGTCTGGTTTTATCTTCACTGAAATCATCAGCCTTTTTTTCCTTGCTGT TGGGGTCTACTTCATTGCCGGACAGGATGGAGTTCGCCAGTCAAGAGCTTCAGACAAGCA GACACTGTTATCCAATGACCAACTTTATCAGCCCCTTAAGGATCGGGAAGATGACCAATA TAGCCACCTTCAAGGAAACAATTCAAGGAAGAATTGAGCCCAAGACTCAGAGTAGAGTTG CCTTTTTTGGACAAATGGAGTCATGCAATACGCCGCTGCAGACATTCTCATTCAAGTCTT TGAGTGGACATATGTTTTCATTTACCTGGGTTGATATCTAGGAGTGAAGAATTGCTGAAT TGTATGGTAAATTTATGCATAATATTTTAAGAAACTGCCAGAGTGTTTTCCAAACTGTTC TTTTTACATTTCCACGAGTGATAGATGAATGAGGGTTCTTGCTGCACTGCATCCTCACAA ATATTTGTTATCTTTTTTAGTATAGTCATTAAAGTGGATATAAAATAGTAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 834-950, + strand, RNAz p=0.915522 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 834-950, + strand, RNAz p=0.915522 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-146, gnl|bosTau2|chr15 (15184164-15184016) | |
| 1-146, gnl|Hg17|chr11 (117720257-117720406) | |
| 1-146, gnl|Mm7|chr9 (44914769-44914608) | |
| 175-395, gnl|bosTau2|chr15 (15179872-15179652) | |
| 175-395, gnl|canFam2|chr5 (18389303-18388950) | |
| 175-395, gnl|dasNov1|scaffold_13031 (9832-10184) | |
| 175-395, gnl|echTel1|scaffold_301432 (3671-3311) | |
| 175-395, gnl|hg17|chr11 (117725622-117725977) | |
| 175-395, gnl|Hg17|chr11 (117725663-117725895) | |
| 175-395, gnl|loxAfr1|scaffold_17764 (7737-7377) | |
| 175-395, gnl|mm7|chr9 (44908778-44908431) | |
| 175-395, gnl|Mm7|chr9 (44908740-44908508) | |
| 175-395, gnl|monDom2|scaffold_2 (120350550-120350188) | |
| 175-395, gnl|oryCun1|scaffold_174783 (2167-1812) | |
| 175-395, gnl|panTro1|chr9 (119733289-119733644) | |
| 175-395, gnl|rheMac2|chr14 (116730345-116730697) | |
| 175-395, gnl|rn3|chr8 (47936602-47936257) | |
| 396-527, gnl|bosTau2|chr15 (15179100-15178969) | |
| 396-527, gnl|canFam2|chr5 (18388478-18388108) | |
| 396-527, gnl|dasNov1|scaffold_13031 (10445-10809) | |
| 396-527, gnl|echTel1|scaffold_301432 (3204-2839) | |
| 396-527, gnl|hg17|chr11 (117726250-117726619) | |
| 396-527, gnl|Hg17|chr11 (117726477-117726608) | |
| 396-527, gnl|loxAfr1|scaffold_17764 (7049-6668) | |
| 396-527, gnl|mm7|chr9 (44908179-44907842) | |
| 396-527, gnl|Mm7|chr9 (44907982-44907851) | |
| 396-527, gnl|monDom2|scaffold_2 (120349951-120349596) | |
| 396-527, gnl|oryCun1|scaffold_174783 (1176-804) | |
| 396-527, gnl|panTro1|chr9 (119733917-119734286) | |
| 396-527, gnl|rheMac2|chr14 (116730976-116731327) | |
| 396-527, gnl|rn3|chr8 (47936030-47935730) | |
| 702-952, gnl|bosTau2|chr5 (63828009-63828260) | |
| 713-950, gnl|bosTau2|chr10 (10149149-10148913) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-146, gnl|bosTau2|chr15 (15184164-15184016) | |
| 1-146, gnl|Hg17|chr11 (117720257-117720406) | |
| 1-146, gnl|Mm7|chr9 (44914769-44914608) | |
| 175-395, gnl|bosTau2|chr15 (15179872-15179652) | |
| 175-395, gnl|canFam2|chr5 (18389303-18388950) | |
| 175-395, gnl|dasNov1|scaffold_13031 (9832-10184) | |
| 175-395, gnl|echTel1|scaffold_301432 (3671-3311) | |
| 175-395, gnl|hg17|chr11 (117725622-117725977) | |
| 175-395, gnl|Hg17|chr11 (117725663-117725895) | |
| 175-395, gnl|loxAfr1|scaffold_17764 (7737-7377) | |
| 175-395, gnl|mm7|chr9 (44908778-44908431) | |
| 175-395, gnl|Mm7|chr9 (44908740-44908508) | |
| 175-395, gnl|monDom2|scaffold_2 (120350550-120350188) | |
| 175-395, gnl|oryCun1|scaffold_174783 (2167-1812) | |
| 175-395, gnl|panTro1|chr9 (119733289-119733644) | |
| 175-395, gnl|rheMac2|chr14 (116730345-116730697) | |
| 175-395, gnl|rn3|chr8 (47936602-47936257) | |
| 396-527, gnl|bosTau2|chr15 (15179100-15178969) | |
| 396-527, gnl|canFam2|chr5 (18388478-18388108) | |
| 396-527, gnl|dasNov1|scaffold_13031 (10445-10809) | |
| 396-527, gnl|echTel1|scaffold_301432 (3204-2839) | |
| 396-527, gnl|hg17|chr11 (117726250-117726619) | |
| 396-527, gnl|Hg17|chr11 (117726477-117726608) | |
| 396-527, gnl|loxAfr1|scaffold_17764 (7049-6668) | |
| 396-527, gnl|mm7|chr9 (44908179-44907842) | |
| 396-527, gnl|Mm7|chr9 (44907982-44907851) | |
| 396-527, gnl|monDom2|scaffold_2 (120349951-120349596) | |
| 396-527, gnl|oryCun1|scaffold_174783 (1176-804) | |
| 396-527, gnl|panTro1|chr9 (119733917-119734286) | |
| 396-527, gnl|rheMac2|chr14 (116730976-116731327) | |
| 396-527, gnl|rn3|chr8 (47936030-47935730) | |
| 702-952, gnl|bosTau2|chr5 (63828009-63828260) | |
| 713-950, gnl|bosTau2|chr10 (10149149-10148913) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| thg (2.15545) | |
| spl (0.715922) | |
| sin (0.69979) | |
| fty (0.527519) | |
| med (0.232504) | |
| rec (0.17307) | |
| cag (0.151194) | |
| isp (0.150376) | |
| tra (0.123092) | |
| jej (0.0989218) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (2.15545) | |
| spl (0.715922) | |
| sin (0.69979) | |
| fty (0.527519) | |
| med (0.232504) | |
| rec (0.17307) | |
| cag (0.151194) | |
| isp (0.150376) | |
| tra (0.123092) | |
| jej (0.0989218) |