Non-Coding RNA Search

Ss1.1-LyN1-MLN01C030070.5

Sequence:


               
               GCGGCTCGAGCGGAAGTGCAAGGAGGCACCAGGAGCCGGGTTGGCTGCTGGGTTTCTGGC
TCCGCTGTGCCCTTCAGGGACGTTCTGGGGCGGTCGGTTCCTTAGAAGCCCGCATCCGCC
AGCCCAGACCCGTACGAAGCCGGCGCTTGAGGCCGCTCTGAGTCCGAGGAGCTGATGCAG
GCCGCGCCCTGGAGCCCCCGTAGCGGGGCCGGACCATGAGCCTGCTGGGCGGCCTGGCTT
CCTCGCCGCGGGCCCCGCTGCAGTCCAGCAGGGCCAGGATGAAAAAGCTCCCGAAGAAGA
GCCAGAACGAGAAGTACCGGCTCAAGTACCTGCGGCTGCGCAAGGCGGCCAAAGCCACGG
TGTTTGAAAATGCTGCTATTTGTGATGAAATTGCTCGTCTTGAGGAAAAATTTCTTAAAG
CAAAAGAAGAAAGACGGTACTTGCTAAAGAAGCTCCTCCAGCTTCAGGCTCTAACTGAAG
GGGAAGTACAGGCTGCCGCTCCTTCCCACAGCTCCAGTTTGCCCCTGACCTATGGTGTGG
CCAGCTCTGTGGGAACTGTACAGGGAGCTGGGCCGATTTCTGGGCCAAGCACTGGAGCTG
AGGAACCATTTGGGAAGAAATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCGGAAGTGCAAGGAGGCACCAGGAGCCGGGTTGGCTGCTGGGTTTCTGGC
TCCGCTGTGCCCTTCAGGGACGTTCTGGGGCGGTCGGTTCCTTAGAAGCCCGCATCCGCC
AGCCCAGACCCGTACGAAGCCGGCGCTTGAGGCCGCTCTGAGTCCGAGGAGCTGATGCAG
GCCGCGCCCTGGAGCCCCCGTAGCGGGGCCGGACCATGAGCCTGCTGGGCGGCCTGGCTT
CCTCGCCGCGGGCCCCGCTGCAGTCCAGCAGGGCCAGGATGAAAAAGCTCCCGAAGAAGA
GCCAGAACGAGAAGTACCGGCTCAAGTACCTGCGGCTGCGCAAGGCGGCCAAAGCCACGG
TGTTTGAAAATGCTGCTATTTGTGATGAAATTGCTCGTCTTGAGGAAAAATTTCTTAAAG
CAAAAGAAGAAAGACGGTACTTGCTAAAGAAGCTCCTCCAGCTTCAGGCTCTAACTGAAG
GGGAAGTACAGGCTGCCGCTCCTTCCCACAGCTCCAGTTTGCCCCTGACCTATGGTGTGG
CCAGCTCTGTGGGAACTGTACAGGGAGCTGGGCCGATTTCTGGGCCAAGCACTGGAGCTG
AGGAACCATTTGGGAAGAAATCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6GPH2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6GPH2_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               248-369, - strand, RNAz p=0.885329
               

               
               501-620, + strand, RNAz p=0.905448
               

               
               507-624, + strand, RNAz p=0.907367

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-369, - strand, RNAz p=0.885329
               

               
               501-620, + strand, RNAz p=0.905448
               

               
               507-624, + strand, RNAz p=0.907367

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032811, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032811, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               10-369, gnl|bosTau2|chr29 (21010537-21010181)
               

               
               10-369, gnl|Hg17|chr11 (123997985-123998343)
               


               
               436-624, gnl|bosTau2|chr29 (21007503-21007315)
               

               
               436-624, gnl|canFam2|chr5 (12782747-12782510)
               

               
               436-624, gnl|danRer3|chrUn (39398015-39397778)
               

               
               436-624, gnl|dasNov1|scaffold_180391 (3966-4203)
               

               
               436-624, gnl|echTel1|scaffold_302366 (5301-5067)
               

               
               436-624, gnl|fr1|chrUn (160801323-160801568)
               

               
               436-624, gnl|hg17|chr11 (124000776-124001013)
               

               
               436-624, gnl|Hg17|chr11 (124000776-124000964)
               

               
               436-624, gnl|mm7|chr9 (37583019-37582794)
               

               
               436-624, gnl|Mm7|chr9 (37583017-37582841)
               

               
               436-624, gnl|monDom2|scaffold_15 (10304775-10305012)
               

               
               436-624, gnl|oryCun1|scaffold_84083 (1530-1295)
               

               
               436-624, gnl|panTro1|chr9 (126082163-126082400)
               

               
               436-624, gnl|rheMac2|chr14 (122777074-122777311)
               

               
               436-624, gnl|rn3|chr8 (38904302-38904077)
               

               
               436-624, gnl|tetNig1|chrUn_random (90481714-90481469)
               

               
               436-624, gnl|xenTro1|scaffold_654 (52754-52979)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-369, gnl|bosTau2|chr29 (21010537-21010181)
               

               
               10-369, gnl|Hg17|chr11 (123997985-123998343)
               


               
               436-624, gnl|bosTau2|chr29 (21007503-21007315)
               

               
               436-624, gnl|canFam2|chr5 (12782747-12782510)
               

               
               436-624, gnl|danRer3|chrUn (39398015-39397778)
               

               
               436-624, gnl|dasNov1|scaffold_180391 (3966-4203)
               

               
               436-624, gnl|echTel1|scaffold_302366 (5301-5067)
               

               
               436-624, gnl|fr1|chrUn (160801323-160801568)
               

               
               436-624, gnl|hg17|chr11 (124000776-124001013)
               

               
               436-624, gnl|Hg17|chr11 (124000776-124000964)
               

               
               436-624, gnl|mm7|chr9 (37583019-37582794)
               

               
               436-624, gnl|Mm7|chr9 (37583017-37582841)
               

               
               436-624, gnl|monDom2|scaffold_15 (10304775-10305012)
               

               
               436-624, gnl|oryCun1|scaffold_84083 (1530-1295)
               

               
               436-624, gnl|panTro1|chr9 (126082163-126082400)
               

               
               436-624, gnl|rheMac2|chr14 (122777074-122777311)
               

               
               436-624, gnl|rn3|chr8 (38904302-38904077)
               

               
               436-624, gnl|tetNig1|chrUn_random (90481714-90481469)
               

               
               436-624, gnl|xenTro1|scaffold_654 (52754-52979)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               pgl (0.118483)

	248-369, - strand, RNAz p=0.885329
	501-620, + strand, RNAz p=0.905448
	507-624, + strand, RNAz p=0.907367

	10-369, gnl\|bosTau2\|chr29 (21010537-21010181)
	10-369, gnl\|Hg17\|chr11 (123997985-123998343)

	436-624, gnl\|bosTau2\|chr29 (21007503-21007315)
	436-624, gnl\|canFam2\|chr5 (12782747-12782510)
	436-624, gnl\|danRer3\|chrUn (39398015-39397778)
	436-624, gnl\|dasNov1\|scaffold_180391 (3966-4203)
	436-624, gnl\|echTel1\|scaffold_302366 (5301-5067)
	436-624, gnl\|fr1\|chrUn (160801323-160801568)
	436-624, gnl\|hg17\|chr11 (124000776-124001013)
	436-624, gnl\|Hg17\|chr11 (124000776-124000964)
	436-624, gnl\|mm7\|chr9 (37583019-37582794)
	436-624, gnl\|Mm7\|chr9 (37583017-37582841)
	436-624, gnl\|monDom2\|scaffold_15 (10304775-10305012)
	436-624, gnl\|oryCun1\|scaffold_84083 (1530-1295)
	436-624, gnl\|panTro1\|chr9 (126082163-126082400)
	436-624, gnl\|rheMac2\|chr14 (122777074-122777311)
	436-624, gnl\|rn3\|chr8 (38904302-38904077)
	436-624, gnl\|tetNig1\|chrUn_random (90481714-90481469)
	436-624, gnl\|xenTro1\|scaffold_654 (52754-52979)